Gvermi6819.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6819.t1
Unique NameGvermi6819.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2416515..2416997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6819Gvermi6819Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2416515..2416997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6819.t1Gvermi6819.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2416515..2416997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6819.t1.start1Gvermi6819.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2416515..2416517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6819.t1.CDS1Gvermi6819.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2416515..2416650 +
Gvermi6819.t1.CDS2Gvermi6819.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2416765..2416997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6819.t1.exon1Gvermi6819.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2416515..2416650 +
Gvermi6819.t1.exon2Gvermi6819.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2416765..2416997 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6819.t1.intron1Gvermi6819.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2416651..2416764 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6819.t1.stop1Gvermi6819.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2416995..2416997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6819.t1 ID=Gvermi6819.t1|Name=Gvermi6819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=123bp
MQETIATKLEENNSDDDGDVEQTIVEEDEDDAAAVIGLRERKRPIDSGER
PMDHEQMAPNVLKKEVTALWEDVNKSIVDMKARISGLRATLHQLVGTLSK
SRCLAGLVHRPHELPGFVQGGV*
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spliced messenger RNA

>Gvermi6819.t1 ID=Gvermi6819.t1|Name=Gvermi6819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=369bp|location=Sequence derived from alignment at ScGOVlb_88:2416515..2416997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGAAACAATTGCTACAAAGCTCGAAGAAAACAACAGCGACGATGA
CGGGGATGTGGAACAAACAATCGTTGAAGAGGATGAAGATGATGCAGCAG
CAGTTATTGGTTTGCGGGAAAGAAAACGTCCAATTGATAGTGGTGAGAGA
CCTATGGACCATGAACAAATGGCTCCTAACGTTCTCAAGAAAGAAGTGAC
GGCTTTATGGGAAGACGTGAATAAGAGCATTGTTGATATGAAAGCCAGGA
TTTCTGGCCTTCGCGCTACACTTCACCAGCTAGTCGGAACGCTGTCAAAG
AGCCGTTGCCTTGCGGGACTGGTGCATAGACCGCACGAGCTTCCAGGCTT
CGTGCAAGGAGGGGTGTGA
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protein sequence of Gvermi6819.t1

>Gvermi6819.t1 ID=Gvermi6819.t1|Name=Gvermi6819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=123bp
MQETIATKLEENNSDDDGDVEQTIVEEDEDDAAAVIGLRERKRPIDSGER
PMDHEQMAPNVLKKEVTALWEDVNKSIVDMKARISGLRATLHQLVGTLSK
SRCLAGLVHRPHELPGFVQGGV*
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mRNA from alignment at ScGOVlb_88:2416515..2416997+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6819.t1 ID=Gvermi6819.t1|Name=Gvermi6819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=483bp|location=Sequence derived from alignment at ScGOVlb_88:2416515..2416997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGAAACAATTGCTACAAAGCTCGAAGAAAACAACAGCGACGATGA
CGGGGATGTGGAACAAACAATCGTTGAAGAGGATGAAGATGATGCAGCAG
CAGTTATTGGTTTGCGGGAAAGAAAACGTCCAATTGGTATGACAGGTTTA
CATGGAAAGTAGCAAATGGCGTAACATGCTTTATTAAGCAGCGTTGAGTC
AATGATGCAATTCATGAGAATAATTGATAGTTCTTTGTATTCTACCGCAG
ATAGTGGTGAGAGACCTATGGACCATGAACAAATGGCTCCTAACGTTCTC
AAGAAAGAAGTGACGGCTTTATGGGAAGACGTGAATAAGAGCATTGTTGA
TATGAAAGCCAGGATTTCTGGCCTTCGCGCTACACTTCACCAGCTAGTCG
GAACGCTGTCAAAGAGCCGTTGCCTTGCGGGACTGGTGCATAGACCGCAC
GAGCTTCCAGGCTTCGTGCAAGGAGGGGTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2416515..2416997+

>Gvermi6819.t1 ID=Gvermi6819.t1|Name=Gvermi6819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=369bp|location=Sequence derived from alignment at ScGOVlb_88:2416515..2416997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGAAACAATTGCTACAAAGCTCGAAGAAAACAACAGCGACGATGA
CGGGGATGTGGAACAAACAATCGTTGAAGAGGATGAAGATGATGCAGCAG
CAGTTATTGGTTTGCGGGAAAGAAAACGTCCAATTGATAGTGGTGAGAGA
CCTATGGACCATGAACAAATGGCTCCTAACGTTCTCAAGAAAGAAGTGAC
GGCTTTATGGGAAGACGTGAATAAGAGCATTGTTGATATGAAAGCCAGGA
TTTCTGGCCTTCGCGCTACACTTCACCAGCTAGTCGGAACGCTGTCAAAG
AGCCGTTGCCTTGCGGGACTGGTGCATAGACCGCACGAGCTTCCAGGCTT
CGTGCAAGGAGGGGTGTGA
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