Gvermi6818.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6818.t1
Unique NameGvermi6818.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length458
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2381400..2382773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_003609-tr
PFAMsAAA_33,PNK3P
Max annot lvl33208|Metazoa
KEGG koko:K08073
Evalue5.11e-77
EggNOG OGsCOG0241@1|root,KOG2134@2759|Eukaryota,38C15@33154|Opisthokonta,3B9QB@33208|Metazoa,3D29U@33213|Bilateria
EC2.7.1.78,3.1.3.32
DescriptionPolynucleotide kinase 3 phosphatase
COG categoryL
BRITEko00000,ko01000,ko01009,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6818Gvermi6818Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2381400..2382773 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6818.t1.start1Gvermi6818.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2381400..2381402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6818.t1.CDS1Gvermi6818.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2381400..2382773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6818.t1.exon1Gvermi6818.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2381400..2382773 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6818.t1.stop1Gvermi6818.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2382771..2382773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6818.t1Gvermi6818.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2381400..2382773 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6818.t1 ID=Gvermi6818.t1|Name=Gvermi6818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=458bp
MPTQQPLQTNKRVRQQTTLNALAGIAEGSDAKRSRRAEPPREGKWLPCEK
GLMRYEPKSWGDQSGALRKGGALKVAAFDLDSTLITTKSRAKFPKSPNDW
RLLNAQVQPMVAALARDGFVLVVFTNQAGVSNGRIGEPFVKSRIEGVLAA
LKVDVGVFVATAKDNFRKPATGMWEQFVQLIGRVSRIDAHSSFYVGDAAG
RKARAGHAADFSDSDLRFSINIGLSFRTPEQYFLGKAAEAVSADALHGFD
PRKTVEEIGPVMIGQGTDMELLLKNLVTPTAVVEDIMMGASQGAEVAPVQ
TMILMHGFPASGKSTFVKRYLVPRGYAWINQDSLHTFSRCIRATRNELAA
GKSVVIDNTNADSNARRKYIEVAKEHGANVKVLALSMASGRELCEHLNVV
RERETKGESAHVPKVAYHAFQKRRQAPHVDEGIDAIGEVKFIPCFVSERE
KYMFTRL*
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spliced messenger RNA

>Gvermi6818.t1 ID=Gvermi6818.t1|Name=Gvermi6818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at ScGOVlb_88:2381400..2382773+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACGCAGCAGCCGCTTCAAACAAACAAGCGTGTGCGGCAGCAGAC
GACGCTCAATGCGCTGGCCGGCATAGCGGAGGGCTCCGATGCCAAGCGAT
CGCGCCGCGCCGAGCCGCCGCGGGAGGGCAAGTGGCTCCCGTGCGAGAAG
GGCCTCATGAGGTACGAGCCCAAGTCGTGGGGCGACCAGAGCGGCGCGTT
GCGCAAAGGCGGCGCGCTGAAAGTGGCCGCCTTCGACCTCGACAGCACGC
TGATCACCACCAAGTCGCGCGCCAAGTTCCCCAAGAGCCCCAACGACTGG
CGGCTGCTCAACGCGCAGGTGCAGCCCATGGTGGCCGCGCTGGCGCGCGA
CGGCTTCGTGCTCGTCGTGTTCACCAACCAGGCGGGGGTGAGCAACGGGC
GCATCGGCGAGCCGTTTGTCAAGTCGCGCATTGAGGGCGTGCTCGCCGCT
CTCAAGGTGGACGTGGGCGTGTTTGTGGCCACGGCGAAGGACAACTTCCG
CAAGCCGGCCACGGGCATGTGGGAGCAGTTTGTGCAGCTGATTGGGCGCG
TGTCTCGAATCGACGCGCACAGCTCTTTTTACGTCGGTGACGCCGCGGGG
AGAAAGGCGCGTGCGGGTCATGCGGCCGACTTCTCCGACAGCGACCTGCG
CTTCAGCATCAACATTGGGCTGTCGTTCCGCACGCCGGAGCAGTACTTTC
TGGGCAAGGCTGCGGAAGCGGTCTCCGCAGACGCTCTGCACGGCTTTGAC
CCCAGGAAAACGGTGGAGGAAATTGGGCCGGTGATGATCGGGCAAGGAAC
GGACATGGAGCTTTTGCTGAAGAACTTGGTGACGCCCACTGCTGTGGTGG
AGGACATCATGATGGGCGCCTCGCAAGGCGCGGAGGTTGCACCCGTGCAG
ACGATGATCCTCATGCACGGGTTCCCCGCGTCTGGGAAGAGCACTTTTGT
GAAGCGGTATCTGGTGCCGCGCGGGTACGCGTGGATCAACCAAGACAGTT
TACACACGTTTAGCAGATGCATTCGAGCGACGCGAAACGAGCTGGCGGCG
GGGAAGAGCGTGGTGATTGACAACACCAACGCGGACAGCAACGCTCGAAG
AAAGTACATTGAAGTTGCGAAGGAGCATGGTGCCAACGTGAAAGTACTGG
CATTGAGCATGGCAAGTGGCAGGGAGCTGTGTGAACACCTGAATGTGGTG
AGGGAGCGCGAGACAAAGGGCGAGAGCGCACATGTGCCCAAAGTGGCTTA
CCACGCGTTTCAAAAGCGGAGACAGGCGCCGCACGTGGACGAGGGAATCG
ATGCCATCGGGGAAGTTAAATTCATTCCATGCTTTGTGTCAGAACGCGAG
AAATACATGTTCACGAGACTGTGA
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protein sequence of Gvermi6818.t1

>Gvermi6818.t1 ID=Gvermi6818.t1|Name=Gvermi6818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=458bp
MPTQQPLQTNKRVRQQTTLNALAGIAEGSDAKRSRRAEPPREGKWLPCEK
GLMRYEPKSWGDQSGALRKGGALKVAAFDLDSTLITTKSRAKFPKSPNDW
RLLNAQVQPMVAALARDGFVLVVFTNQAGVSNGRIGEPFVKSRIEGVLAA
LKVDVGVFVATAKDNFRKPATGMWEQFVQLIGRVSRIDAHSSFYVGDAAG
RKARAGHAADFSDSDLRFSINIGLSFRTPEQYFLGKAAEAVSADALHGFD
PRKTVEEIGPVMIGQGTDMELLLKNLVTPTAVVEDIMMGASQGAEVAPVQ
TMILMHGFPASGKSTFVKRYLVPRGYAWINQDSLHTFSRCIRATRNELAA
GKSVVIDNTNADSNARRKYIEVAKEHGANVKVLALSMASGRELCEHLNVV
RERETKGESAHVPKVAYHAFQKRRQAPHVDEGIDAIGEVKFIPCFVSERE
KYMFTRL*
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mRNA from alignment at ScGOVlb_88:2381400..2382773+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6818.t1 ID=Gvermi6818.t1|Name=Gvermi6818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at ScGOVlb_88:2381400..2382773+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACGCAGCAGCCGCTTCAAACAAACAAGCGTGTGCGGCAGCAGAC
GACGCTCAATGCGCTGGCCGGCATAGCGGAGGGCTCCGATGCCAAGCGAT
CGCGCCGCGCCGAGCCGCCGCGGGAGGGCAAGTGGCTCCCGTGCGAGAAG
GGCCTCATGAGGTACGAGCCCAAGTCGTGGGGCGACCAGAGCGGCGCGTT
GCGCAAAGGCGGCGCGCTGAAAGTGGCCGCCTTCGACCTCGACAGCACGC
TGATCACCACCAAGTCGCGCGCCAAGTTCCCCAAGAGCCCCAACGACTGG
CGGCTGCTCAACGCGCAGGTGCAGCCCATGGTGGCCGCGCTGGCGCGCGA
CGGCTTCGTGCTCGTCGTGTTCACCAACCAGGCGGGGGTGAGCAACGGGC
GCATCGGCGAGCCGTTTGTCAAGTCGCGCATTGAGGGCGTGCTCGCCGCT
CTCAAGGTGGACGTGGGCGTGTTTGTGGCCACGGCGAAGGACAACTTCCG
CAAGCCGGCCACGGGCATGTGGGAGCAGTTTGTGCAGCTGATTGGGCGCG
TGTCTCGAATCGACGCGCACAGCTCTTTTTACGTCGGTGACGCCGCGGGG
AGAAAGGCGCGTGCGGGTCATGCGGCCGACTTCTCCGACAGCGACCTGCG
CTTCAGCATCAACATTGGGCTGTCGTTCCGCACGCCGGAGCAGTACTTTC
TGGGCAAGGCTGCGGAAGCGGTCTCCGCAGACGCTCTGCACGGCTTTGAC
CCCAGGAAAACGGTGGAGGAAATTGGGCCGGTGATGATCGGGCAAGGAAC
GGACATGGAGCTTTTGCTGAAGAACTTGGTGACGCCCACTGCTGTGGTGG
AGGACATCATGATGGGCGCCTCGCAAGGCGCGGAGGTTGCACCCGTGCAG
ACGATGATCCTCATGCACGGGTTCCCCGCGTCTGGGAAGAGCACTTTTGT
GAAGCGGTATCTGGTGCCGCGCGGGTACGCGTGGATCAACCAAGACAGTT
TACACACGTTTAGCAGATGCATTCGAGCGACGCGAAACGAGCTGGCGGCG
GGGAAGAGCGTGGTGATTGACAACACCAACGCGGACAGCAACGCTCGAAG
AAAGTACATTGAAGTTGCGAAGGAGCATGGTGCCAACGTGAAAGTACTGG
CATTGAGCATGGCAAGTGGCAGGGAGCTGTGTGAACACCTGAATGTGGTG
AGGGAGCGCGAGACAAAGGGCGAGAGCGCACATGTGCCCAAAGTGGCTTA
CCACGCGTTTCAAAAGCGGAGACAGGCGCCGCACGTGGACGAGGGAATCG
ATGCCATCGGGGAAGTTAAATTCATTCCATGCTTTGTGTCAGAACGCGAG
AAATACATGTTCACGAGACTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2381400..2382773+

>Gvermi6818.t1 ID=Gvermi6818.t1|Name=Gvermi6818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1374bp|location=Sequence derived from alignment at ScGOVlb_88:2381400..2382773+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACGCAGCAGCCGCTTCAAACAAACAAGCGTGTGCGGCAGCAGAC
GACGCTCAATGCGCTGGCCGGCATAGCGGAGGGCTCCGATGCCAAGCGAT
CGCGCCGCGCCGAGCCGCCGCGGGAGGGCAAGTGGCTCCCGTGCGAGAAG
GGCCTCATGAGGTACGAGCCCAAGTCGTGGGGCGACCAGAGCGGCGCGTT
GCGCAAAGGCGGCGCGCTGAAAGTGGCCGCCTTCGACCTCGACAGCACGC
TGATCACCACCAAGTCGCGCGCCAAGTTCCCCAAGAGCCCCAACGACTGG
CGGCTGCTCAACGCGCAGGTGCAGCCCATGGTGGCCGCGCTGGCGCGCGA
CGGCTTCGTGCTCGTCGTGTTCACCAACCAGGCGGGGGTGAGCAACGGGC
GCATCGGCGAGCCGTTTGTCAAGTCGCGCATTGAGGGCGTGCTCGCCGCT
CTCAAGGTGGACGTGGGCGTGTTTGTGGCCACGGCGAAGGACAACTTCCG
CAAGCCGGCCACGGGCATGTGGGAGCAGTTTGTGCAGCTGATTGGGCGCG
TGTCTCGAATCGACGCGCACAGCTCTTTTTACGTCGGTGACGCCGCGGGG
AGAAAGGCGCGTGCGGGTCATGCGGCCGACTTCTCCGACAGCGACCTGCG
CTTCAGCATCAACATTGGGCTGTCGTTCCGCACGCCGGAGCAGTACTTTC
TGGGCAAGGCTGCGGAAGCGGTCTCCGCAGACGCTCTGCACGGCTTTGAC
CCCAGGAAAACGGTGGAGGAAATTGGGCCGGTGATGATCGGGCAAGGAAC
GGACATGGAGCTTTTGCTGAAGAACTTGGTGACGCCCACTGCTGTGGTGG
AGGACATCATGATGGGCGCCTCGCAAGGCGCGGAGGTTGCACCCGTGCAG
ACGATGATCCTCATGCACGGGTTCCCCGCGTCTGGGAAGAGCACTTTTGT
GAAGCGGTATCTGGTGCCGCGCGGGTACGCGTGGATCAACCAAGACAGTT
TACACACGTTTAGCAGATGCATTCGAGCGACGCGAAACGAGCTGGCGGCG
GGGAAGAGCGTGGTGATTGACAACACCAACGCGGACAGCAACGCTCGAAG
AAAGTACATTGAAGTTGCGAAGGAGCATGGTGCCAACGTGAAAGTACTGG
CATTGAGCATGGCAAGTGGCAGGGAGCTGTGTGAACACCTGAATGTGGTG
AGGGAGCGCGAGACAAAGGGCGAGAGCGCACATGTGCCCAAAGTGGCTTA
CCACGCGTTTCAAAAGCGGAGACAGGCGCCGCACGTGGACGAGGGAATCG
ATGCCATCGGGGAAGTTAAATTCATTCCATGCTTTGTGTCAGAACGCGAG
AAATACATGTTCACGAGACTGTGA
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