Gvermi6816.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6816.t1
Unique NameGvermi6816.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2377226..2378506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog504487.JCM19302_2416
Preferred namephbA
PFAMsThiolase_C,Thiolase_N
Max annot lvl976|Bacteroidetes
KEGG rclassRC00004,RC00326
KEGG koko:K00626
KEGG ReactionR00238,R01177
KEGG Pathwayko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020
KEGG ModuleM00088,M00095,M00373,M00374,M00375
Evalue3.73e-149
EggNOG OGsCOG0183@1|root,COG0183@2|Bacteria,4NE3Q@976|Bacteroidetes,1HX7B@117743|Flavobacteriia
EC2.3.1.9
DescriptionCatalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6816Gvermi6816Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2377226..2378506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6816.t1Gvermi6816.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2377226..2378506 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6816.t1.start1Gvermi6816.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2377226..2377228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6816.t1.CDS1Gvermi6816.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2377226..2377355 +
Gvermi6816.t1.CDS2Gvermi6816.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2377419..2378506 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6816.t1.exon1Gvermi6816.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2377226..2377355 +
Gvermi6816.t1.exon2Gvermi6816.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2377419..2378506 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6816.t1.intron1Gvermi6816.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2377356..2377418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6816.t1.stop1Gvermi6816.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2378504..2378506 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6816.t1 ID=Gvermi6816.t1|Name=Gvermi6816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=406bp
MNTNDIYSFSEVVVVGAARTPIGSYGGSLSKVTATKLGSIAIEGALKRAG
VQACAVDACYMGNVCSAGLGQAPARQAAIGAGLPVSCVCTTVNKVCSSGL
KAISMAAQDIILGQADIIVAGGMESMSNIPFYVLQARFGYRIGNGELVDG
LLQDGLIDPYSQKHMGLFAEQCSSLYGFSREMQDKHAKESYRRSRASWED
EKFNSEVVPVIINEGRKEINVQRDEECFRIDISNIPSMQTPFVKDGTGTV
TSGNASGMNDGAAAVVLMSKSKADELGLSIMATIRGFADAEVEPELFTTA
PSQSIPKALKMANKSLDDVDVFELNEAFSVVALANTKLLGLAEDKVNLFG
GAVSLGHPLGCSGARIVVTLLNVMRHTNSRVGTAGICNGGGGSTAMVFER
TSEKQ*
back to top

spliced messenger RNA

>Gvermi6816.t1 ID=Gvermi6816.t1|Name=Gvermi6816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_88:2377226..2378506+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACAAATGATATCTACAGTTTCAGTGAAGTTGTTGTGGTCGGAGC
AGCACGCACTCCAATTGGGTCATATGGTGGTTCACTTTCAAAGGTTACAG
CGACGAAATTAGGATCAATTGCCATTGAAGGTGCGCTAAAGAGAGCGGGT
GTTCAGGCATGTGCTGTGGATGCGTGTTACATGGGAAATGTGTGCTCTGC
TGGTCTTGGACAAGCTCCGGCCCGACAGGCAGCTATTGGAGCAGGCTTGC
CTGTTTCCTGTGTATGTACCACCGTGAACAAAGTTTGTTCGTCCGGATTG
AAGGCGATATCTATGGCTGCTCAAGACATAATTCTGGGTCAAGCAGATAT
CATCGTTGCAGGAGGGATGGAAAGCATGTCGAATATCCCGTTTTATGTGC
TACAGGCTCGATTCGGCTATCGCATTGGCAACGGAGAGCTGGTAGATGGC
TTACTTCAAGATGGACTGATTGATCCATACAGTCAGAAACATATGGGCCT
CTTTGCTGAACAATGTTCTAGTCTCTATGGGTTTTCACGTGAAATGCAGG
ACAAACACGCCAAAGAAAGCTACCGTCGATCGAGAGCCTCGTGGGAAGAT
GAAAAGTTCAACTCAGAAGTGGTCCCTGTGATTATAAACGAAGGCAGGAA
GGAGATAAACGTGCAACGTGACGAGGAGTGTTTTCGAATTGATATTTCAA
ACATCCCTTCAATGCAAACGCCATTTGTCAAAGACGGCACTGGGACAGTG
ACGAGTGGGAATGCATCTGGAATGAACGATGGTGCTGCAGCTGTTGTCCT
CATGAGCAAATCCAAAGCTGATGAGCTGGGACTGTCTATAATGGCAACAA
TACGTGGTTTTGCGGACGCGGAAGTGGAACCTGAACTGTTTACTACAGCT
CCATCACAGTCTATTCCAAAAGCATTGAAAATGGCGAACAAGTCTTTGGA
TGACGTGGATGTTTTCGAGTTGAACGAAGCGTTTTCGGTGGTGGCTTTGG
CTAACACAAAGCTCTTGGGACTAGCAGAAGACAAGGTGAATCTTTTCGGG
GGAGCAGTGAGCTTGGGACATCCATTGGGGTGCAGTGGGGCACGAATTGT
GGTTACTTTGCTTAATGTCATGCGACATACAAATTCTAGGGTGGGAACAG
CAGGAATATGCAACGGTGGCGGTGGATCTACGGCAATGGTGTTTGAGAGA
ACATCCGAAAAGCAGTGA
back to top

protein sequence of Gvermi6816.t1

>Gvermi6816.t1 ID=Gvermi6816.t1|Name=Gvermi6816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=406bp
MNTNDIYSFSEVVVVGAARTPIGSYGGSLSKVTATKLGSIAIEGALKRAG
VQACAVDACYMGNVCSAGLGQAPARQAAIGAGLPVSCVCTTVNKVCSSGL
KAISMAAQDIILGQADIIVAGGMESMSNIPFYVLQARFGYRIGNGELVDG
LLQDGLIDPYSQKHMGLFAEQCSSLYGFSREMQDKHAKESYRRSRASWED
EKFNSEVVPVIINEGRKEINVQRDEECFRIDISNIPSMQTPFVKDGTGTV
TSGNASGMNDGAAAVVLMSKSKADELGLSIMATIRGFADAEVEPELFTTA
PSQSIPKALKMANKSLDDVDVFELNEAFSVVALANTKLLGLAEDKVNLFG
GAVSLGHPLGCSGARIVVTLLNVMRHTNSRVGTAGICNGGGGSTAMVFER
TSEKQ*
back to top

mRNA from alignment at ScGOVlb_88:2377226..2378506+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6816.t1 ID=Gvermi6816.t1|Name=Gvermi6816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1281bp|location=Sequence derived from alignment at ScGOVlb_88:2377226..2378506+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACAAATGATATCTACAGTTTCAGTGAAGTTGTTGTGGTCGGAGC
AGCACGCACTCCAATTGGGTCATATGGTGGTTCACTTTCAAAGGTTACAG
CGACGAAATTAGGATCAATTGCCATTGAAGGTGAGTGAGGTATTCTTCGC
GCGAAAATCTACAAAGATCGATGCTAACATGCTTCAACGCCAGGTGCGCT
AAAGAGAGCGGGTGTTCAGGCATGTGCTGTGGATGCGTGTTACATGGGAA
ATGTGTGCTCTGCTGGTCTTGGACAAGCTCCGGCCCGACAGGCAGCTATT
GGAGCAGGCTTGCCTGTTTCCTGTGTATGTACCACCGTGAACAAAGTTTG
TTCGTCCGGATTGAAGGCGATATCTATGGCTGCTCAAGACATAATTCTGG
GTCAAGCAGATATCATCGTTGCAGGAGGGATGGAAAGCATGTCGAATATC
CCGTTTTATGTGCTACAGGCTCGATTCGGCTATCGCATTGGCAACGGAGA
GCTGGTAGATGGCTTACTTCAAGATGGACTGATTGATCCATACAGTCAGA
AACATATGGGCCTCTTTGCTGAACAATGTTCTAGTCTCTATGGGTTTTCA
CGTGAAATGCAGGACAAACACGCCAAAGAAAGCTACCGTCGATCGAGAGC
CTCGTGGGAAGATGAAAAGTTCAACTCAGAAGTGGTCCCTGTGATTATAA
ACGAAGGCAGGAAGGAGATAAACGTGCAACGTGACGAGGAGTGTTTTCGA
ATTGATATTTCAAACATCCCTTCAATGCAAACGCCATTTGTCAAAGACGG
CACTGGGACAGTGACGAGTGGGAATGCATCTGGAATGAACGATGGTGCTG
CAGCTGTTGTCCTCATGAGCAAATCCAAAGCTGATGAGCTGGGACTGTCT
ATAATGGCAACAATACGTGGTTTTGCGGACGCGGAAGTGGAACCTGAACT
GTTTACTACAGCTCCATCACAGTCTATTCCAAAAGCATTGAAAATGGCGA
ACAAGTCTTTGGATGACGTGGATGTTTTCGAGTTGAACGAAGCGTTTTCG
GTGGTGGCTTTGGCTAACACAAAGCTCTTGGGACTAGCAGAAGACAAGGT
GAATCTTTTCGGGGGAGCAGTGAGCTTGGGACATCCATTGGGGTGCAGTG
GGGCACGAATTGTGGTTACTTTGCTTAATGTCATGCGACATACAAATTCT
AGGGTGGGAACAGCAGGAATATGCAACGGTGGCGGTGGATCTACGGCAAT
GGTGTTTGAGAGAACATCCGAAAAGCAGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2377226..2378506+

>Gvermi6816.t1 ID=Gvermi6816.t1|Name=Gvermi6816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1218bp|location=Sequence derived from alignment at ScGOVlb_88:2377226..2378506+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACAAATGATATCTACAGTTTCAGTGAAGTTGTTGTGGTCGGAGC
AGCACGCACTCCAATTGGGTCATATGGTGGTTCACTTTCAAAGGTTACAG
CGACGAAATTAGGATCAATTGCCATTGAAGGTGCGCTAAAGAGAGCGGGT
GTTCAGGCATGTGCTGTGGATGCGTGTTACATGGGAAATGTGTGCTCTGC
TGGTCTTGGACAAGCTCCGGCCCGACAGGCAGCTATTGGAGCAGGCTTGC
CTGTTTCCTGTGTATGTACCACCGTGAACAAAGTTTGTTCGTCCGGATTG
AAGGCGATATCTATGGCTGCTCAAGACATAATTCTGGGTCAAGCAGATAT
CATCGTTGCAGGAGGGATGGAAAGCATGTCGAATATCCCGTTTTATGTGC
TACAGGCTCGATTCGGCTATCGCATTGGCAACGGAGAGCTGGTAGATGGC
TTACTTCAAGATGGACTGATTGATCCATACAGTCAGAAACATATGGGCCT
CTTTGCTGAACAATGTTCTAGTCTCTATGGGTTTTCACGTGAAATGCAGG
ACAAACACGCCAAAGAAAGCTACCGTCGATCGAGAGCCTCGTGGGAAGAT
GAAAAGTTCAACTCAGAAGTGGTCCCTGTGATTATAAACGAAGGCAGGAA
GGAGATAAACGTGCAACGTGACGAGGAGTGTTTTCGAATTGATATTTCAA
ACATCCCTTCAATGCAAACGCCATTTGTCAAAGACGGCACTGGGACAGTG
ACGAGTGGGAATGCATCTGGAATGAACGATGGTGCTGCAGCTGTTGTCCT
CATGAGCAAATCCAAAGCTGATGAGCTGGGACTGTCTATAATGGCAACAA
TACGTGGTTTTGCGGACGCGGAAGTGGAACCTGAACTGTTTACTACAGCT
CCATCACAGTCTATTCCAAAAGCATTGAAAATGGCGAACAAGTCTTTGGA
TGACGTGGATGTTTTCGAGTTGAACGAAGCGTTTTCGGTGGTGGCTTTGG
CTAACACAAAGCTCTTGGGACTAGCAGAAGACAAGGTGAATCTTTTCGGG
GGAGCAGTGAGCTTGGGACATCCATTGGGGTGCAGTGGGGCACGAATTGT
GGTTACTTTGCTTAATGTCATGCGACATACAAATTCTAGGGTGGGAACAG
CAGGAATATGCAACGGTGGCGGTGGATCTACGGCAATGGTGTTTGAGAGA
ACATCCGAAAAGCAGTGA
back to top