Gvermi6815.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6815.t1
Unique NameGvermi6815.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2375792..2376688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_02195T0
Preferred nameFAM173B
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016020,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0019866,GO:0030061,GO:0031090,GO:0031644,GO:0031646,GO:0031966,GO:0031967,GO:0031975,GO:0032259,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044057,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0048518,GO:0050789,GO:0051239,GO:0051240,GO:0051930,GO:0051931,GO:0065007,GO:0071704,GO:0140096,GO:1901564,GO:1904058
Evalue1.64e-18
EggNOG OGsCOG0500@1|root,KOG4058@2759|Eukaryota
Descriptionpositive regulation of sensory perception of pain
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6815Gvermi6815Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2375792..2376688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6815.t1Gvermi6815.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2375792..2376688 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6815.t1.stop1Gvermi6815.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2375792..2375794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6815.t1.CDS1Gvermi6815.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2375792..2375985 -
Gvermi6815.t1.CDS2Gvermi6815.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2376109..2376688 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6815.t1.exon1Gvermi6815.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2375792..2375985 -
Gvermi6815.t1.exon2Gvermi6815.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2376109..2376688 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6815.t1.intron1Gvermi6815.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2375986..2376108 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6815.t1.start1Gvermi6815.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2376686..2376688 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6815.t1 ID=Gvermi6815.t1|Name=Gvermi6815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp
MSTDTTSDRSSRIARTGLTTIACTTGILALLTAPFLRTFSGAPYVASSKL
ARQTIRRFLREEARRRKQSRDDAPRLIDLGAGSGELILDAAEEGWVSKGA
ELNAWLVLAANFRVWNRGLSSNASVKWCDMWDMNVDDADVVTVFGVPSIM
RRVGEKMEKEASHGCVVCCNGFEIPGWRGCKSGEVWFYYVDEQVSGREPL
FSKKKDSGTPKHLHIFLSVCICILSFSEDKKYRTNHAYGCDAKCIRLMFF
LIIQVRM*
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spliced messenger RNA

>Gvermi6815.t1 ID=Gvermi6815.t1|Name=Gvermi6815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2375792..2376688- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACTGACACAACCTCTGATCGAAGCTCCCGAATTGCACGAACAGG
GTTGACGACAATTGCCTGTACAACTGGAATATTGGCGCTCCTAACTGCTC
CATTCCTTCGAACGTTCTCAGGAGCACCCTACGTCGCCTCATCGAAGTTG
GCTCGACAAACCATTCGTAGATTTTTGCGCGAGGAAGCACGGCGAAGGAA
ACAGTCACGGGATGATGCGCCGCGTCTGATTGATTTGGGTGCTGGTTCCG
GTGAACTTATTCTTGATGCAGCGGAGGAGGGGTGGGTTTCAAAGGGTGCT
GAGCTAAATGCGTGGCTTGTGTTGGCTGCCAACTTTCGAGTATGGAATAG
AGGTCTTTCTTCAAATGCCTCAGTCAAGTGGTGTGACATGTGGGACATGA
ACGTGGACGACGCTGATGTTGTGACAGTTTTTGGAGTGCCCAGCATTATG
CGAAGAGTCGGAGAAAAGATGGAGAAAGAAGCAAGTCATGGGTGCGTAGT
TTGTTGTAATGGGTTTGAGATACCGGGATGGAGGGGATGCAAATCCGGAG
AGGTGTGGTTTTATTACGTTGATGAACAGGTCAGTGGGCGGGAGCCCCTC
TTCTCAAAGAAAAAGGATTCTGGAACCCCAAAACACCTGCACATTTTTCT
TTCTGTCTGCATCTGCATATTATCTTTCAGCGAAGACAAAAAGTATCGAA
CCAATCATGCATACGGATGTGATGCAAAATGTATTCGTTTAATGTTCTTT
CTTATAATACAAGTGCGGATGTGA
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protein sequence of Gvermi6815.t1

>Gvermi6815.t1 ID=Gvermi6815.t1|Name=Gvermi6815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MSTDTTSDRSSRIARTGLTTIACTTGILALLTAPFLRTFSGAPYVASSKL
ARQTIRRFLREEARRRKQSRDDAPRLIDLGAGSGELILDAAEEGWVSKGA
ELNAWLVLAANFRVWNRGLSSNASVKWCDMWDMNVDDADVVTVFGVPSIM
RRVGEKMEKEASHGCVVCCNGFEIPGWRGCKSGEVWFYYVDEQVSGREPL
FSKKKDSGTPKHLHIFLSVCICILSFSEDKKYRTNHAYGCDAKCIRLMFF
LIIQVRM*
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mRNA from alignment at ScGOVlb_88:2375792..2376688-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6815.t1 ID=Gvermi6815.t1|Name=Gvermi6815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_88:2375792..2376688- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACTGACACAACCTCTGATCGAAGCTCCCGAATTGCACGAACAGG
GTTGACGACAATTGCCTGTACAACTGGAATATTGGCGCTCCTAACTGCTC
CATTCCTTCGAACGTTCTCAGGAGCACCCTACGTCGCCTCATCGAAGTTG
GCTCGACAAACCATTCGTAGATTTTTGCGCGAGGAAGCACGGCGAAGGAA
ACAGTCACGGGATGATGCGCCGCGTCTGATTGATTTGGGTGCTGGTTCCG
GTGAACTTATTCTTGATGCAGCGGAGGAGGGGTGGGTTTCAAAGGGTGCT
GAGCTAAATGCGTGGCTTGTGTTGGCTGCCAACTTTCGAGTATGGAATAG
AGGTCTTTCTTCAAATGCCTCAGTCAAGTGGTGTGACATGTGGGACATGA
ACGTGGACGACGCTGATGTTGTGACAGTTTTTGGAGTGCCCAGCATTATG
CGAAGAGTCGGAGAAAAGATGGAGAAAGAAGCAAGTCATGGGTGCGTAGT
TTGTTGTAATGGGTTTGAGATACCGGGATGGAGGGGATGCAAATCCGGAG
AGGTGTGGTTTTATTACGTTGATGAACAGGGTAAGCGCACAATCAATATC
CCGAGCAACACTAACACGCTTAACATAAAAGGGGGAAAAAGCAGTACAGT
GTCTGGCAACCCACATATATCCTGAACGATTATCGCGTCTAACTCGATTT
CAGTCAGTGGGCGGGAGCCCCTCTTCTCAAAGAAAAAGGATTCTGGAACC
CCAAAACACCTGCACATTTTTCTTTCTGTCTGCATCTGCATATTATCTTT
CAGCGAAGACAAAAAGTATCGAACCAATCATGCATACGGATGTGATGCAA
AATGTATTCGTTTAATGTTCTTTCTTATAATACAAGTGCGGATGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2375792..2376688-

>Gvermi6815.t1 ID=Gvermi6815.t1|Name=Gvermi6815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2375792..2376688- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACTGACACAACCTCTGATCGAAGCTCCCGAATTGCACGAACAGG
GTTGACGACAATTGCCTGTACAACTGGAATATTGGCGCTCCTAACTGCTC
CATTCCTTCGAACGTTCTCAGGAGCACCCTACGTCGCCTCATCGAAGTTG
GCTCGACAAACCATTCGTAGATTTTTGCGCGAGGAAGCACGGCGAAGGAA
ACAGTCACGGGATGATGCGCCGCGTCTGATTGATTTGGGTGCTGGTTCCG
GTGAACTTATTCTTGATGCAGCGGAGGAGGGGTGGGTTTCAAAGGGTGCT
GAGCTAAATGCGTGGCTTGTGTTGGCTGCCAACTTTCGAGTATGGAATAG
AGGTCTTTCTTCAAATGCCTCAGTCAAGTGGTGTGACATGTGGGACATGA
ACGTGGACGACGCTGATGTTGTGACAGTTTTTGGAGTGCCCAGCATTATG
CGAAGAGTCGGAGAAAAGATGGAGAAAGAAGCAAGTCATGGGTGCGTAGT
TTGTTGTAATGGGTTTGAGATACCGGGATGGAGGGGATGCAAATCCGGAG
AGGTGTGGTTTTATTACGTTGATGAACAGGTCAGTGGGCGGGAGCCCCTC
TTCTCAAAGAAAAAGGATTCTGGAACCCCAAAACACCTGCACATTTTTCT
TTCTGTCTGCATCTGCATATTATCTTTCAGCGAAGACAAAAAGTATCGAA
CCAATCATGCATACGGATGTGATGCAAAATGTATTCGTTTAATGTTCTTT
CTTATAATACAAGTGCGGATGTGA
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