Gvermi6812.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6812.t1
Unique NameGvermi6812.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2368434..2369096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314271.RB2654_08177
PFAMsGlyco_transf_7C
Max annot lvl28211|Alphaproteobacteria
Evalue5.18e-11
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1MZBS@1224|Proteobacteria,2UEUD@28211|Alphaproteobacteria
DescriptionN-terminal domain of galactosyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6812Gvermi6812Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2367183..2369096 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6812.t1.start1Gvermi6812.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2368434..2368436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6812.t1.CDS1Gvermi6812.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2368434..2369096 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6812.t1.exon1Gvermi6812.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2368434..2369096 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6812.t1.stop1Gvermi6812.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2369094..2369096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6812.t1Gvermi6812.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2368434..2369096 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6812.t1 ID=Gvermi6812.t1|Name=Gvermi6812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=221bp
MEDVKWYNYMRVNGVKIISSGQPVLDDPERHIYVSTCYVIQSPVTPFIIR
TTSSYWQVLRTLSPHVDVVRLVERFSSYPLSSMIGIHIRGKNIKTDITGV
NATDYSEESSRTTDYWRNLTKVDSFVEEMRKQTADQLFYVAADQKEVLTK
LEHEFPSRIFYTPRHCDSRDRDCLPFALADILLLAKCASLRGSYWSSFSE
LSTRIGGARFLLAGIDFGRP*
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spliced messenger RNA

>Gvermi6812.t1 ID=Gvermi6812.t1|Name=Gvermi6812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_88:2368434..2369096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATGTGAAGTGGTACAATTACATGAGGGTGAACGGGGTTAAGAT
TATTTCATCTGGTCAACCTGTCTTGGATGATCCTGAGCGACATATTTACG
TCTCCACTTGTTATGTTATTCAGTCACCAGTCACGCCGTTCATCATAAGA
ACAACAAGCTCATATTGGCAAGTTTTGCGAACCTTATCGCCCCATGTGGA
TGTTGTTCGACTCGTGGAAAGATTCTCGAGCTACCCTCTGTCGAGCATGA
TTGGTATCCACATCAGGGGGAAGAACATTAAGACAGATATTACTGGGGTG
AATGCAACTGACTATTCCGAGGAGTCTTCTCGGACTACTGACTATTGGAG
AAATCTAACCAAGGTTGATTCCTTTGTGGAAGAAATGCGAAAACAGACAG
CGGATCAATTGTTTTACGTTGCTGCTGACCAGAAAGAAGTTCTGACAAAG
CTTGAACATGAATTTCCCTCGCGCATATTCTATACACCAAGGCACTGTGA
TAGTCGAGACAGAGACTGTCTGCCTTTTGCACTAGCAGATATCTTACTTC
TTGCGAAGTGTGCATCATTACGCGGAAGTTACTGGAGTTCTTTCTCGGAA
CTGTCAACTCGTATCGGCGGGGCGCGGTTCTTGCTGGCCGGCATAGACTT
TGGACGTCCGTAA
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protein sequence of Gvermi6812.t1

>Gvermi6812.t1 ID=Gvermi6812.t1|Name=Gvermi6812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=221bp
MEDVKWYNYMRVNGVKIISSGQPVLDDPERHIYVSTCYVIQSPVTPFIIR
TTSSYWQVLRTLSPHVDVVRLVERFSSYPLSSMIGIHIRGKNIKTDITGV
NATDYSEESSRTTDYWRNLTKVDSFVEEMRKQTADQLFYVAADQKEVLTK
LEHEFPSRIFYTPRHCDSRDRDCLPFALADILLLAKCASLRGSYWSSFSE
LSTRIGGARFLLAGIDFGRP*
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mRNA from alignment at ScGOVlb_88:2368434..2369096+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6812.t1 ID=Gvermi6812.t1|Name=Gvermi6812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_88:2368434..2369096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGATGTGAAGTGGTACAATTACATGAGGGTGAACGGGGTTAAGAT
TATTTCATCTGGTCAACCTGTCTTGGATGATCCTGAGCGACATATTTACG
TCTCCACTTGTTATGTTATTCAGTCACCAGTCACGCCGTTCATCATAAGA
ACAACAAGCTCATATTGGCAAGTTTTGCGAACCTTATCGCCCCATGTGGA
TGTTGTTCGACTCGTGGAAAGATTCTCGAGCTACCCTCTGTCGAGCATGA
TTGGTATCCACATCAGGGGGAAGAACATTAAGACAGATATTACTGGGGTG
AATGCAACTGACTATTCCGAGGAGTCTTCTCGGACTACTGACTATTGGAG
AAATCTAACCAAGGTTGATTCCTTTGTGGAAGAAATGCGAAAACAGACAG
CGGATCAATTGTTTTACGTTGCTGCTGACCAGAAAGAAGTTCTGACAAAG
CTTGAACATGAATTTCCCTCGCGCATATTCTATACACCAAGGCACTGTGA
TAGTCGAGACAGAGACTGTCTGCCTTTTGCACTAGCAGATATCTTACTTC
TTGCGAAGTGTGCATCATTACGCGGAAGTTACTGGAGTTCTTTCTCGGAA
CTGTCAACTCGTATCGGCGGGGCGCGGTTCTTGCTGGCCGGCATAGACTT
TGGACGTCCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2368434..2369096+

>Gvermi6812.t1 ID=Gvermi6812.t1|Name=Gvermi6812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=663bp|location=Sequence derived from alignment at ScGOVlb_88:2368434..2369096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGATGTGAAGTGGTACAATTACATGAGGGTGAACGGGGTTAAGAT
TATTTCATCTGGTCAACCTGTCTTGGATGATCCTGAGCGACATATTTACG
TCTCCACTTGTTATGTTATTCAGTCACCAGTCACGCCGTTCATCATAAGA
ACAACAAGCTCATATTGGCAAGTTTTGCGAACCTTATCGCCCCATGTGGA
TGTTGTTCGACTCGTGGAAAGATTCTCGAGCTACCCTCTGTCGAGCATGA
TTGGTATCCACATCAGGGGGAAGAACATTAAGACAGATATTACTGGGGTG
AATGCAACTGACTATTCCGAGGAGTCTTCTCGGACTACTGACTATTGGAG
AAATCTAACCAAGGTTGATTCCTTTGTGGAAGAAATGCGAAAACAGACAG
CGGATCAATTGTTTTACGTTGCTGCTGACCAGAAAGAAGTTCTGACAAAG
CTTGAACATGAATTTCCCTCGCGCATATTCTATACACCAAGGCACTGTGA
TAGTCGAGACAGAGACTGTCTGCCTTTTGCACTAGCAGATATCTTACTTC
TTGCGAAGTGTGCATCATTACGCGGAAGTTACTGGAGTTCTTTCTCGGAA
CTGTCAACTCGTATCGGCGGGGCGCGGTTCTTGCTGGCCGGCATAGACTT
TGGACGTCCGTAA
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