Gvermi6810.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6810.t1
Unique NameGvermi6810.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length488
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2358977..2360440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708821.1
Preferred nameSLC37A4
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K08171,ko:K13783,ko:K14004,ko:K15108
KEGG TC2.A.1.4,2.A.1.4.5,2.A.29.16,2.A.29.28
KEGG Pathwayko03013,ko04141,ko04150,ko04973,map03013,map04141,map04150,map04973
KEGG ModuleM00404,M00427
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0009058,GO:0012505,GO:0015075,GO:0015103,GO:0015114,GO:0015119,GO:0015152,GO:0015291,GO:0015297,GO:0015301,GO:0015315,GO:0015318,GO:0015526,GO:0015605,GO:0015698,GO:0015711,GO:0015712,GO:0015748,GO:0015760,GO:0016020,GO:0016021,GO:0016051,GO:0019318,GO:0019319,GO:0022804,GO:0022857,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033500,GO:0034220,GO:0035435,GO:0042175,GO:0042592,GO:0042593,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0048878,GO:0051179,GO:0051234,GO:0055085,GO:0061513,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0098656,GO:0098660,GO:0098661,GO:0098827,GO:0099516,GO:1901264,GO:1901505,GO:1901576
Evalue3.38e-105
EggNOG OGsCOG0477@1|root,KOG2533@2759|Eukaryota
Descriptiontransmembrane transport
COG categoryEGP
BRITEko00000,ko00001,ko00002,ko02000,ko03019,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6810Gvermi6810Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2358977..2360440 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6810.t1.stop1Gvermi6810.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2358977..2358979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6810.t1.CDS1Gvermi6810.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2358977..2360440 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6810.t1.exon1Gvermi6810.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2358977..2360440 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6810.t1.start1Gvermi6810.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2360438..2360440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6810.t1Gvermi6810.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2358977..2360440 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6810.t1 ID=Gvermi6810.t1|Name=Gvermi6810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=488bp
MAFIHPCTRGQCLGNPRKVIDSRRFKLWTQPQKRPSRRSFLCKSSAPGNA
RKPLDAPSNSSSLSGGQSKFRIVRGAIFLAMALTYATYVLLRATFTYIAP
VMASSLNLTLQSIGEITSAFPIAYGMSRLFTGVFVDRAAPHVTLAAGLFL
AGLVNVAMGSATSVSSLALLWGMNGLVQGVGAGSSAKMLLNWFSPDERGF
FWALWSTSANVGGFLAPIVCGWLASTKAGFRAGMIVPGAFAMALAFLTVV
FTRSSPRQMGFSTTWEPKAVEKKNQELQNERVPWKQAFMEGVLRNRLIWT
LAISYFFVYFVRSGMKSWLQFWLLDAHTFSASDAAYRVSGVEVGGIIGTF
SAGIISDWVDGRRAAVTVVYLLGLAASLAVTWMTGGRNALWDFLTMAIMG
FMINGPQMMIGLIGAEVADKRVVGTANGMLGLISYLGAAASGMPLAFIIQ
KFKWVGYFSAMLFCSLMSALCLIPLWKLKAQASVKQG*
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spliced messenger RNA

>Gvermi6810.t1 ID=Gvermi6810.t1|Name=Gvermi6810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at ScGOVlb_88:2358977..2360440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTATTCACCCTTGCACCAGAGGCCAGTGTCTTGGAAACCCCAG
AAAAGTTATAGATTCGCGCAGATTCAAGCTATGGACTCAGCCTCAAAAGC
GACCAAGTCGTCGAAGCTTTCTATGCAAATCTTCTGCTCCCGGAAATGCA
CGAAAACCGCTAGACGCACCTTCGAACAGTTCTTCCCTTTCTGGCGGCCA
GTCTAAATTCAGAATTGTTCGTGGTGCAATTTTCCTCGCAATGGCTTTGA
CATATGCAACTTATGTTTTGCTACGAGCAACCTTCACATATATCGCCCCC
GTCATGGCTTCTTCGCTCAATCTTACCTTGCAGAGTATCGGGGAGATAAC
TTCTGCCTTTCCTATAGCGTATGGTATGTCCCGACTATTCACTGGAGTTT
TCGTTGATCGCGCTGCTCCTCATGTTACATTGGCAGCTGGCCTTTTTCTC
GCTGGCCTCGTGAACGTCGCAATGGGCTCTGCAACTTCAGTTTCCTCGCT
CGCTTTGTTATGGGGGATGAATGGACTTGTTCAAGGTGTCGGGGCGGGGT
CTTCTGCAAAAATGCTTTTGAACTGGTTCAGTCCAGATGAAAGAGGATTC
TTCTGGGCGTTGTGGAGTACTAGTGCAAATGTTGGTGGCTTTCTGGCGCC
CATTGTGTGCGGGTGGTTGGCATCAACGAAAGCGGGCTTTCGTGCTGGAA
TGATAGTCCCAGGTGCATTTGCGATGGCGTTGGCGTTCTTAACCGTCGTA
TTCACGAGATCTTCACCACGGCAGATGGGATTCTCAACCACTTGGGAACC
GAAGGCTGTGGAGAAGAAAAATCAAGAGCTCCAAAATGAACGTGTACCAT
GGAAACAAGCTTTTATGGAAGGTGTCTTGAGGAATCGGCTGATATGGACC
TTGGCCATATCGTACTTCTTTGTCTATTTCGTCCGATCTGGTATGAAAAG
CTGGTTGCAGTTCTGGCTGCTTGATGCTCATACGTTTTCTGCGAGTGATG
CGGCTTACAGAGTTTCCGGAGTAGAAGTAGGCGGTATCATAGGAACATTC
TCTGCCGGGATAATATCTGACTGGGTCGATGGGCGACGAGCCGCCGTTAC
TGTAGTGTATCTGTTAGGCCTGGCTGCTAGTCTGGCTGTTACGTGGATGA
CTGGGGGTCGCAATGCACTTTGGGATTTTCTAACGATGGCTATCATGGGG
TTCATGATCAATGGACCGCAAATGATGATTGGACTCATCGGTGCTGAAGT
TGCGGATAAACGAGTTGTAGGCACTGCCAACGGAATGCTTGGCTTGATAA
GCTATCTTGGGGCCGCAGCTTCCGGAATGCCACTGGCATTCATAATTCAG
AAATTCAAGTGGGTGGGGTACTTTTCTGCTATGCTCTTCTGCTCACTCAT
GTCCGCACTTTGTCTAATCCCTCTCTGGAAGCTGAAGGCGCAAGCGTCTG
TAAAGCAAGGGTGA
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protein sequence of Gvermi6810.t1

>Gvermi6810.t1 ID=Gvermi6810.t1|Name=Gvermi6810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=488bp
MAFIHPCTRGQCLGNPRKVIDSRRFKLWTQPQKRPSRRSFLCKSSAPGNA
RKPLDAPSNSSSLSGGQSKFRIVRGAIFLAMALTYATYVLLRATFTYIAP
VMASSLNLTLQSIGEITSAFPIAYGMSRLFTGVFVDRAAPHVTLAAGLFL
AGLVNVAMGSATSVSSLALLWGMNGLVQGVGAGSSAKMLLNWFSPDERGF
FWALWSTSANVGGFLAPIVCGWLASTKAGFRAGMIVPGAFAMALAFLTVV
FTRSSPRQMGFSTTWEPKAVEKKNQELQNERVPWKQAFMEGVLRNRLIWT
LAISYFFVYFVRSGMKSWLQFWLLDAHTFSASDAAYRVSGVEVGGIIGTF
SAGIISDWVDGRRAAVTVVYLLGLAASLAVTWMTGGRNALWDFLTMAIMG
FMINGPQMMIGLIGAEVADKRVVGTANGMLGLISYLGAAASGMPLAFIIQ
KFKWVGYFSAMLFCSLMSALCLIPLWKLKAQASVKQG*
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mRNA from alignment at ScGOVlb_88:2358977..2360440-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6810.t1 ID=Gvermi6810.t1|Name=Gvermi6810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at ScGOVlb_88:2358977..2360440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTTTATTCACCCTTGCACCAGAGGCCAGTGTCTTGGAAACCCCAG
AAAAGTTATAGATTCGCGCAGATTCAAGCTATGGACTCAGCCTCAAAAGC
GACCAAGTCGTCGAAGCTTTCTATGCAAATCTTCTGCTCCCGGAAATGCA
CGAAAACCGCTAGACGCACCTTCGAACAGTTCTTCCCTTTCTGGCGGCCA
GTCTAAATTCAGAATTGTTCGTGGTGCAATTTTCCTCGCAATGGCTTTGA
CATATGCAACTTATGTTTTGCTACGAGCAACCTTCACATATATCGCCCCC
GTCATGGCTTCTTCGCTCAATCTTACCTTGCAGAGTATCGGGGAGATAAC
TTCTGCCTTTCCTATAGCGTATGGTATGTCCCGACTATTCACTGGAGTTT
TCGTTGATCGCGCTGCTCCTCATGTTACATTGGCAGCTGGCCTTTTTCTC
GCTGGCCTCGTGAACGTCGCAATGGGCTCTGCAACTTCAGTTTCCTCGCT
CGCTTTGTTATGGGGGATGAATGGACTTGTTCAAGGTGTCGGGGCGGGGT
CTTCTGCAAAAATGCTTTTGAACTGGTTCAGTCCAGATGAAAGAGGATTC
TTCTGGGCGTTGTGGAGTACTAGTGCAAATGTTGGTGGCTTTCTGGCGCC
CATTGTGTGCGGGTGGTTGGCATCAACGAAAGCGGGCTTTCGTGCTGGAA
TGATAGTCCCAGGTGCATTTGCGATGGCGTTGGCGTTCTTAACCGTCGTA
TTCACGAGATCTTCACCACGGCAGATGGGATTCTCAACCACTTGGGAACC
GAAGGCTGTGGAGAAGAAAAATCAAGAGCTCCAAAATGAACGTGTACCAT
GGAAACAAGCTTTTATGGAAGGTGTCTTGAGGAATCGGCTGATATGGACC
TTGGCCATATCGTACTTCTTTGTCTATTTCGTCCGATCTGGTATGAAAAG
CTGGTTGCAGTTCTGGCTGCTTGATGCTCATACGTTTTCTGCGAGTGATG
CGGCTTACAGAGTTTCCGGAGTAGAAGTAGGCGGTATCATAGGAACATTC
TCTGCCGGGATAATATCTGACTGGGTCGATGGGCGACGAGCCGCCGTTAC
TGTAGTGTATCTGTTAGGCCTGGCTGCTAGTCTGGCTGTTACGTGGATGA
CTGGGGGTCGCAATGCACTTTGGGATTTTCTAACGATGGCTATCATGGGG
TTCATGATCAATGGACCGCAAATGATGATTGGACTCATCGGTGCTGAAGT
TGCGGATAAACGAGTTGTAGGCACTGCCAACGGAATGCTTGGCTTGATAA
GCTATCTTGGGGCCGCAGCTTCCGGAATGCCACTGGCATTCATAATTCAG
AAATTCAAGTGGGTGGGGTACTTTTCTGCTATGCTCTTCTGCTCACTCAT
GTCCGCACTTTGTCTAATCCCTCTCTGGAAGCTGAAGGCGCAAGCGTCTG
TAAAGCAAGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2358977..2360440-

>Gvermi6810.t1 ID=Gvermi6810.t1|Name=Gvermi6810.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1464bp|location=Sequence derived from alignment at ScGOVlb_88:2358977..2360440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTTTATTCACCCTTGCACCAGAGGCCAGTGTCTTGGAAACCCCAG
AAAAGTTATAGATTCGCGCAGATTCAAGCTATGGACTCAGCCTCAAAAGC
GACCAAGTCGTCGAAGCTTTCTATGCAAATCTTCTGCTCCCGGAAATGCA
CGAAAACCGCTAGACGCACCTTCGAACAGTTCTTCCCTTTCTGGCGGCCA
GTCTAAATTCAGAATTGTTCGTGGTGCAATTTTCCTCGCAATGGCTTTGA
CATATGCAACTTATGTTTTGCTACGAGCAACCTTCACATATATCGCCCCC
GTCATGGCTTCTTCGCTCAATCTTACCTTGCAGAGTATCGGGGAGATAAC
TTCTGCCTTTCCTATAGCGTATGGTATGTCCCGACTATTCACTGGAGTTT
TCGTTGATCGCGCTGCTCCTCATGTTACATTGGCAGCTGGCCTTTTTCTC
GCTGGCCTCGTGAACGTCGCAATGGGCTCTGCAACTTCAGTTTCCTCGCT
CGCTTTGTTATGGGGGATGAATGGACTTGTTCAAGGTGTCGGGGCGGGGT
CTTCTGCAAAAATGCTTTTGAACTGGTTCAGTCCAGATGAAAGAGGATTC
TTCTGGGCGTTGTGGAGTACTAGTGCAAATGTTGGTGGCTTTCTGGCGCC
CATTGTGTGCGGGTGGTTGGCATCAACGAAAGCGGGCTTTCGTGCTGGAA
TGATAGTCCCAGGTGCATTTGCGATGGCGTTGGCGTTCTTAACCGTCGTA
TTCACGAGATCTTCACCACGGCAGATGGGATTCTCAACCACTTGGGAACC
GAAGGCTGTGGAGAAGAAAAATCAAGAGCTCCAAAATGAACGTGTACCAT
GGAAACAAGCTTTTATGGAAGGTGTCTTGAGGAATCGGCTGATATGGACC
TTGGCCATATCGTACTTCTTTGTCTATTTCGTCCGATCTGGTATGAAAAG
CTGGTTGCAGTTCTGGCTGCTTGATGCTCATACGTTTTCTGCGAGTGATG
CGGCTTACAGAGTTTCCGGAGTAGAAGTAGGCGGTATCATAGGAACATTC
TCTGCCGGGATAATATCTGACTGGGTCGATGGGCGACGAGCCGCCGTTAC
TGTAGTGTATCTGTTAGGCCTGGCTGCTAGTCTGGCTGTTACGTGGATGA
CTGGGGGTCGCAATGCACTTTGGGATTTTCTAACGATGGCTATCATGGGG
TTCATGATCAATGGACCGCAAATGATGATTGGACTCATCGGTGCTGAAGT
TGCGGATAAACGAGTTGTAGGCACTGCCAACGGAATGCTTGGCTTGATAA
GCTATCTTGGGGCCGCAGCTTCCGGAATGCCACTGGCATTCATAATTCAG
AAATTCAAGTGGGTGGGGTACTTTTCTGCTATGCTCTTCTGCTCACTCAT
GTCCGCACTTTGTCTAATCCCTCTCTGGAAGCTGAAGGCGCAAGCGTCTG
TAAAGCAAGGGTGA
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