Gvermi6809.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6809.t1
Unique NameGvermi6809.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2354871..2355953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6809Gvermi6809Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2354871..2355953 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6809.t1.start1Gvermi6809.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2354871..2354873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6809.t1.CDS1Gvermi6809.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2354871..2355953 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6809.t1.exon1Gvermi6809.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2354871..2355953 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6809.t1.stop1Gvermi6809.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2355951..2355953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6809.t1Gvermi6809.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2354871..2355953 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6809.t1 ID=Gvermi6809.t1|Name=Gvermi6809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=361bp
LQTASDVIVAASDSVLTTFKVTDPQTPSETAILAEWVAPSGFKIRSLSIS
PDASVVALVLADHSSAVLALLRPRSLGRLLRITLPWSEQNDFHLVFFSHA
ALSLTDDQKLRQKMLPQHLHVPFLEAERITAPHRVVPQPLHSQKENAAPY
SLVVALDLLIVYSFSACYTRVHSFSSHQSPNSTAHLCSLPALPKKQYTPV
LHDGTFLHTLQNPLIPISDLRIMKLLALCGAPPALLALVQLPSGKVAASV
FLEHSVMITPLTVRDSRGILFAFCKAGGYILDATAKEVHRIADVKFDQTI
GLRVSALPRKESEQAATVTSNEMCGNQLSCLVHYKDSVIKLLAVHDIIHI
ETLVCKLPFI*
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spliced messenger RNA

>Gvermi6809.t1 ID=Gvermi6809.t1|Name=Gvermi6809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at ScGOVlb_88:2354871..2355953+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCAAACCGCCTCCGATGTGATTGTCGCAGCCTCGGATTCCGTTTTGAC
AACCTTCAAAGTAACTGACCCCCAAACGCCTTCCGAGACTGCCATCCTAG
CAGAATGGGTCGCTCCCTCGGGTTTCAAAATTCGCTCGCTGTCCATTTCG
CCCGATGCATCCGTCGTAGCTCTGGTTTTGGCTGACCACAGTTCCGCCGT
ACTTGCTCTTCTTCGTCCGCGCTCCCTGGGTCGTTTGCTACGCATCACAC
TCCCCTGGTCAGAGCAAAACGACTTCCACCTGGTATTCTTTTCGCACGCT
GCGCTCTCCCTTACCGATGATCAAAAGCTCAGACAAAAAATGCTACCCCA
GCATCTGCATGTGCCATTTCTCGAAGCGGAAAGGATAACTGCCCCACACC
GTGTTGTACCTCAACCATTACACTCTCAAAAAGAAAACGCTGCGCCGTAC
TCGCTGGTTGTCGCGCTTGATCTTCTGATTGTCTACTCTTTTAGTGCGTG
CTATACTCGAGTGCACTCGTTCTCATCACATCAAAGCCCCAACAGCACTG
CGCACCTCTGCTCATTGCCCGCATTACCGAAGAAACAATATACCCCTGTG
TTGCATGACGGCACATTTCTGCACACACTTCAAAACCCTCTCATACCAAT
TTCAGATCTTCGTATCATGAAACTCCTGGCTCTTTGTGGTGCTCCTCCCG
CGTTGTTGGCTCTCGTTCAGCTGCCATCCGGAAAGGTAGCCGCCTCTGTT
TTTCTGGAACATTCAGTCATGATTACCCCACTCACTGTACGCGACTCCAG
AGGAATACTGTTTGCTTTTTGTAAGGCCGGGGGCTACATCTTGGATGCCA
CAGCGAAAGAGGTCCATCGCATTGCTGATGTCAAATTCGACCAAACCATA
GGTCTGAGAGTGTCTGCATTGCCAAGAAAAGAAAGTGAACAAGCAGCAAC
CGTCACCAGTAATGAAATGTGTGGTAATCAGCTTTCCTGCCTCGTGCATT
ATAAGGACAGTGTAATCAAACTTCTTGCTGTGCACGATATAATCCACATT
GAGACTCTTGTGTGTAAACTGCCGTTTATTTGA
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protein sequence of Gvermi6809.t1

>Gvermi6809.t1 ID=Gvermi6809.t1|Name=Gvermi6809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=361bp
LQTASDVIVAASDSVLTTFKVTDPQTPSETAILAEWVAPSGFKIRSLSIS
PDASVVALVLADHSSAVLALLRPRSLGRLLRITLPWSEQNDFHLVFFSHA
ALSLTDDQKLRQKMLPQHLHVPFLEAERITAPHRVVPQPLHSQKENAAPY
SLVVALDLLIVYSFSACYTRVHSFSSHQSPNSTAHLCSLPALPKKQYTPV
LHDGTFLHTLQNPLIPISDLRIMKLLALCGAPPALLALVQLPSGKVAASV
FLEHSVMITPLTVRDSRGILFAFCKAGGYILDATAKEVHRIADVKFDQTI
GLRVSALPRKESEQAATVTSNEMCGNQLSCLVHYKDSVIKLLAVHDIIHI
ETLVCKLPFI*
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mRNA from alignment at ScGOVlb_88:2354871..2355953+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6809.t1 ID=Gvermi6809.t1|Name=Gvermi6809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at ScGOVlb_88:2354871..2355953+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCAAACCGCCTCCGATGTGATTGTCGCAGCCTCGGATTCCGTTTTGAC
AACCTTCAAAGTAACTGACCCCCAAACGCCTTCCGAGACTGCCATCCTAG
CAGAATGGGTCGCTCCCTCGGGTTTCAAAATTCGCTCGCTGTCCATTTCG
CCCGATGCATCCGTCGTAGCTCTGGTTTTGGCTGACCACAGTTCCGCCGT
ACTTGCTCTTCTTCGTCCGCGCTCCCTGGGTCGTTTGCTACGCATCACAC
TCCCCTGGTCAGAGCAAAACGACTTCCACCTGGTATTCTTTTCGCACGCT
GCGCTCTCCCTTACCGATGATCAAAAGCTCAGACAAAAAATGCTACCCCA
GCATCTGCATGTGCCATTTCTCGAAGCGGAAAGGATAACTGCCCCACACC
GTGTTGTACCTCAACCATTACACTCTCAAAAAGAAAACGCTGCGCCGTAC
TCGCTGGTTGTCGCGCTTGATCTTCTGATTGTCTACTCTTTTAGTGCGTG
CTATACTCGAGTGCACTCGTTCTCATCACATCAAAGCCCCAACAGCACTG
CGCACCTCTGCTCATTGCCCGCATTACCGAAGAAACAATATACCCCTGTG
TTGCATGACGGCACATTTCTGCACACACTTCAAAACCCTCTCATACCAAT
TTCAGATCTTCGTATCATGAAACTCCTGGCTCTTTGTGGTGCTCCTCCCG
CGTTGTTGGCTCTCGTTCAGCTGCCATCCGGAAAGGTAGCCGCCTCTGTT
TTTCTGGAACATTCAGTCATGATTACCCCACTCACTGTACGCGACTCCAG
AGGAATACTGTTTGCTTTTTGTAAGGCCGGGGGCTACATCTTGGATGCCA
CAGCGAAAGAGGTCCATCGCATTGCTGATGTCAAATTCGACCAAACCATA
GGTCTGAGAGTGTCTGCATTGCCAAGAAAAGAAAGTGAACAAGCAGCAAC
CGTCACCAGTAATGAAATGTGTGGTAATCAGCTTTCCTGCCTCGTGCATT
ATAAGGACAGTGTAATCAAACTTCTTGCTGTGCACGATATAATCCACATT
GAGACTCTTGTGTGTAAACTGCCGTTTATTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2354871..2355953+

>Gvermi6809.t1 ID=Gvermi6809.t1|Name=Gvermi6809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1083bp|location=Sequence derived from alignment at ScGOVlb_88:2354871..2355953+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCAAACCGCCTCCGATGTGATTGTCGCAGCCTCGGATTCCGTTTTGAC
AACCTTCAAAGTAACTGACCCCCAAACGCCTTCCGAGACTGCCATCCTAG
CAGAATGGGTCGCTCCCTCGGGTTTCAAAATTCGCTCGCTGTCCATTTCG
CCCGATGCATCCGTCGTAGCTCTGGTTTTGGCTGACCACAGTTCCGCCGT
ACTTGCTCTTCTTCGTCCGCGCTCCCTGGGTCGTTTGCTACGCATCACAC
TCCCCTGGTCAGAGCAAAACGACTTCCACCTGGTATTCTTTTCGCACGCT
GCGCTCTCCCTTACCGATGATCAAAAGCTCAGACAAAAAATGCTACCCCA
GCATCTGCATGTGCCATTTCTCGAAGCGGAAAGGATAACTGCCCCACACC
GTGTTGTACCTCAACCATTACACTCTCAAAAAGAAAACGCTGCGCCGTAC
TCGCTGGTTGTCGCGCTTGATCTTCTGATTGTCTACTCTTTTAGTGCGTG
CTATACTCGAGTGCACTCGTTCTCATCACATCAAAGCCCCAACAGCACTG
CGCACCTCTGCTCATTGCCCGCATTACCGAAGAAACAATATACCCCTGTG
TTGCATGACGGCACATTTCTGCACACACTTCAAAACCCTCTCATACCAAT
TTCAGATCTTCGTATCATGAAACTCCTGGCTCTTTGTGGTGCTCCTCCCG
CGTTGTTGGCTCTCGTTCAGCTGCCATCCGGAAAGGTAGCCGCCTCTGTT
TTTCTGGAACATTCAGTCATGATTACCCCACTCACTGTACGCGACTCCAG
AGGAATACTGTTTGCTTTTTGTAAGGCCGGGGGCTACATCTTGGATGCCA
CAGCGAAAGAGGTCCATCGCATTGCTGATGTCAAATTCGACCAAACCATA
GGTCTGAGAGTGTCTGCATTGCCAAGAAAAGAAAGTGAACAAGCAGCAAC
CGTCACCAGTAATGAAATGTGTGGTAATCAGCTTTCCTGCCTCGTGCATT
ATAAGGACAGTGTAATCAAACTTCTTGCTGTGCACGATATAATCCACATT
GAGACTCTTGTGTGTAAACTGCCGTTTATTTGA
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