Gvermi6808.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6808.t1
Unique NameGvermi6808.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2352656..2354339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705449.1
Max annot lvl2759|Eukaryota
Evalue6.84e-47
EggNOG OGs2E1U7@1|root,2S947@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6808Gvermi6808Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2352656..2354339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6808.t1Gvermi6808.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2352656..2354339 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6808.t1.stop1Gvermi6808.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2352656..2352658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6808.t1.CDS1Gvermi6808.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2352656..2352663 -
Gvermi6808.t1.CDS2Gvermi6808.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2352721..2352755 -
Gvermi6808.t1.CDS3Gvermi6808.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2352841..2352867 -
Gvermi6808.t1.CDS4Gvermi6808.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2352979..2353020 -
Gvermi6808.t1.CDS5Gvermi6808.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2353096..2354339 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6808.t1.exon1Gvermi6808.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2352656..2352663 -
Gvermi6808.t1.exon2Gvermi6808.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2352721..2352755 -
Gvermi6808.t1.exon3Gvermi6808.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2352841..2352867 -
Gvermi6808.t1.exon4Gvermi6808.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2352979..2353020 -
Gvermi6808.t1.exon5Gvermi6808.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2353096..2354339 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6808.t1.intron1Gvermi6808.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2352664..2352720 -
Gvermi6808.t1.intron2Gvermi6808.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2352756..2352840 -
Gvermi6808.t1.intron3Gvermi6808.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2352868..2352978 -
Gvermi6808.t1.intron4Gvermi6808.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2353021..2353095 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6808.t1.start1Gvermi6808.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2354337..2354339 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6808.t1 ID=Gvermi6808.t1|Name=Gvermi6808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=452bp
MHCCGLPAAFSPAAPVLSSRHGAHPSTSLTERRRGSFTFSASRATRTQTI
ASSAQQHHDSNSLTSHTRQLSNLPSSTIRVASARAISPMRRPDGDRFTEM
QPLPSQRRTDLMAPKTVGFWSIIPYMAASAVFVGAAWIAKKRFTARQAAL
VDEFGQVIVLYGTTPDAKREIASEYKRKLGPGILRGAMFSSYLATLVAEK
AIVPSIIQEVSMVKKLLRVGDDKAINAINKLATTMSDSPSLLGKLLFITE
RVLSPEKAAGLQLVPLFPYSASTVADLQKNMLERCYRDFVTNEVENNQVE
EVPLAAAAALRLDEAHAKLVFDGVVKDRARRLEEEAAKAEAAEAEEAVKS
STEDLDYPARSGEPAKATVHAYQCSDCGYTLFPAAGREFKFYGDDFVCPA
CGAPKDKFVDINAEDRFAGESQVQIRLKPKYREQERLKSIAYAGRLYGNV
R*
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spliced messenger RNA

>Gvermi6808.t1 ID=Gvermi6808.t1|Name=Gvermi6808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at ScGOVlb_88:2352656..2354339- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGCTGCGGGCTTCCTGCGGCGTTCTCGCCCGCGGCGCCTGTGCT
CTCTTCCCGACATGGCGCGCATCCCTCTACTTCGCTGACCGAGCGCCGCC
GTGGCTCATTCACTTTTTCTGCATCTCGTGCCACCCGAACTCAAACTATT
GCATCATCGGCCCAACAGCACCATGATTCCAATTCTCTAACGTCTCACAC
CCGCCAACTATCCAATCTGCCTTCTTCCACAATTCGCGTCGCAAGTGCAC
GTGCTATCAGCCCCATGCGGCGTCCAGACGGCGATCGCTTCACTGAGATG
CAACCGCTTCCCTCTCAGCGTCGCACTGACTTGATGGCGCCAAAAACGGT
GGGATTCTGGTCAATAATACCTTATATGGCGGCATCCGCCGTTTTTGTTG
GTGCAGCTTGGATAGCCAAGAAACGTTTTACTGCCCGACAGGCTGCTCTT
GTCGATGAATTTGGGCAGGTCATTGTTCTATACGGCACCACTCCGGACGC
AAAGCGGGAGATTGCCTCGGAATACAAGCGGAAACTAGGACCCGGTATTC
TGCGGGGCGCTATGTTTTCTTCTTATCTTGCCACGCTTGTCGCTGAAAAG
GCAATTGTTCCCTCCATCATTCAAGAAGTCTCAATGGTTAAGAAGCTCTT
ACGTGTTGGTGACGACAAGGCCATTAATGCTATAAACAAACTGGCAACAA
CTATGAGTGATTCACCGAGCTTGTTGGGCAAACTTCTTTTTATCACTGAA
AGGGTGTTGAGTCCAGAAAAAGCGGCCGGGTTGCAACTTGTTCCACTATT
TCCCTATAGCGCATCTACCGTTGCGGATCTTCAAAAAAATATGCTTGAAA
GGTGTTATCGCGATTTCGTCACAAACGAAGTTGAAAACAATCAAGTAGAA
GAAGTGCCGTTGGCAGCTGCTGCTGCATTGCGGCTAGACGAAGCGCATGC
GAAACTTGTTTTTGACGGTGTGGTGAAGGATCGCGCTAGACGGCTTGAGG
AAGAAGCAGCAAAGGCTGAGGCGGCTGAAGCAGAAGAAGCTGTCAAATCT
AGCACTGAAGATCTAGATTACCCCGCCAGATCAGGAGAGCCCGCCAAGGC
GACTGTGCACGCGTATCAATGCTCAGATTGCGGATACACATTGTTTCCTG
CGGCTGGGAGAGAGTTTAAATTTTACGGCGACGACTTCGTATGTCCGGCT
TGCGGTGCCCCGAAGGACAAATTTGTGGATATAAATGCTGAAGATCGGTT
TGCTGGTGAGTCTCAAGTGCAGATACGACTGAAGCCAAAGTACCGTGAAC
AGGAACGACTAAAAAGTATAGCGTATGCCGGTCGATTGTATGGTAATGTC
CGGTAA
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protein sequence of Gvermi6808.t1

>Gvermi6808.t1 ID=Gvermi6808.t1|Name=Gvermi6808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=452bp
MHCCGLPAAFSPAAPVLSSRHGAHPSTSLTERRRGSFTFSASRATRTQTI
ASSAQQHHDSNSLTSHTRQLSNLPSSTIRVASARAISPMRRPDGDRFTEM
QPLPSQRRTDLMAPKTVGFWSIIPYMAASAVFVGAAWIAKKRFTARQAAL
VDEFGQVIVLYGTTPDAKREIASEYKRKLGPGILRGAMFSSYLATLVAEK
AIVPSIIQEVSMVKKLLRVGDDKAINAINKLATTMSDSPSLLGKLLFITE
RVLSPEKAAGLQLVPLFPYSASTVADLQKNMLERCYRDFVTNEVENNQVE
EVPLAAAAALRLDEAHAKLVFDGVVKDRARRLEEEAAKAEAAEAEEAVKS
STEDLDYPARSGEPAKATVHAYQCSDCGYTLFPAAGREFKFYGDDFVCPA
CGAPKDKFVDINAEDRFAGESQVQIRLKPKYREQERLKSIAYAGRLYGNV
R*
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mRNA from alignment at ScGOVlb_88:2352656..2354339-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6808.t1 ID=Gvermi6808.t1|Name=Gvermi6808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1684bp|location=Sequence derived from alignment at ScGOVlb_88:2352656..2354339- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTGCTGCGGGCTTCCTGCGGCGTTCTCGCCCGCGGCGCCTGTGCT
CTCTTCCCGACATGGCGCGCATCCCTCTACTTCGCTGACCGAGCGCCGCC
GTGGCTCATTCACTTTTTCTGCATCTCGTGCCACCCGAACTCAAACTATT
GCATCATCGGCCCAACAGCACCATGATTCCAATTCTCTAACGTCTCACAC
CCGCCAACTATCCAATCTGCCTTCTTCCACAATTCGCGTCGCAAGTGCAC
GTGCTATCAGCCCCATGCGGCGTCCAGACGGCGATCGCTTCACTGAGATG
CAACCGCTTCCCTCTCAGCGTCGCACTGACTTGATGGCGCCAAAAACGGT
GGGATTCTGGTCAATAATACCTTATATGGCGGCATCCGCCGTTTTTGTTG
GTGCAGCTTGGATAGCCAAGAAACGTTTTACTGCCCGACAGGCTGCTCTT
GTCGATGAATTTGGGCAGGTCATTGTTCTATACGGCACCACTCCGGACGC
AAAGCGGGAGATTGCCTCGGAATACAAGCGGAAACTAGGACCCGGTATTC
TGCGGGGCGCTATGTTTTCTTCTTATCTTGCCACGCTTGTCGCTGAAAAG
GCAATTGTTCCCTCCATCATTCAAGAAGTCTCAATGGTTAAGAAGCTCTT
ACGTGTTGGTGACGACAAGGCCATTAATGCTATAAACAAACTGGCAACAA
CTATGAGTGATTCACCGAGCTTGTTGGGCAAACTTCTTTTTATCACTGAA
AGGGTGTTGAGTCCAGAAAAAGCGGCCGGGTTGCAACTTGTTCCACTATT
TCCCTATAGCGCATCTACCGTTGCGGATCTTCAAAAAAATATGCTTGAAA
GGTGTTATCGCGATTTCGTCACAAACGAAGTTGAAAACAATCAAGTAGAA
GAAGTGCCGTTGGCAGCTGCTGCTGCATTGCGGCTAGACGAAGCGCATGC
GAAACTTGTTTTTGACGGTGTGGTGAAGGATCGCGCTAGACGGCTTGAGG
AAGAAGCAGCAAAGGCTGAGGCGGCTGAAGCAGAAGAAGCTGTCAAATCT
AGCACTGAAGATCTAGATTACCCCGCCAGATCAGGAGAGCCCGCCAAGGC
GACTGTGCACGCGTATCAATGCTCAGATTGCGGATACACATTGTTTCCTG
CGGCTGGGAGAGAGTTTAAATTTTACGGCGACGACTTCGTATGTCCGGCT
TGCGGTGCCCCGAAGGACAAATTTGTGGATATAAATGCTGAAGAGTAGGT
CACGAAAAGTTCTACTTCTTTCTATTAGGACATCCATCACCTTTCAGAAA
CTTCTTTGTTGTTTTGTAGTCGGTTTGCTGGTGAGTCTCAAGTGCAGATA
CGACTGAAGCCGTAAGTTTTCCCCTTTTTGATGCAGTTAATGAGCTTTAA
ATTTGGCTACCTGCTGTGGCTGTCTCTACATGAATCAGTGAAGATCTGAC
TAGACATGCTTCGTCGAGGCAGAAAGTACCGTGAACAGGAACGACTAAAG
TGCGCGATGAATCTTACATTACGATGGTAATGTATCTGCCGCTACAATGA
TGAACATGGTAAATGCTACGGAATCGCAGCGCAGAAGTATAGCGTATGCC
GGTCGATTGTATGGTAATGGTGTGTAATTGCAATACACTCAGTGTGTCCG
AAGATACTAACCAATCTACTTGGAAGTCCGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2352656..2354339-

>Gvermi6808.t1 ID=Gvermi6808.t1|Name=Gvermi6808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1356bp|location=Sequence derived from alignment at ScGOVlb_88:2352656..2354339- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTGCTGCGGGCTTCCTGCGGCGTTCTCGCCCGCGGCGCCTGTGCT
CTCTTCCCGACATGGCGCGCATCCCTCTACTTCGCTGACCGAGCGCCGCC
GTGGCTCATTCACTTTTTCTGCATCTCGTGCCACCCGAACTCAAACTATT
GCATCATCGGCCCAACAGCACCATGATTCCAATTCTCTAACGTCTCACAC
CCGCCAACTATCCAATCTGCCTTCTTCCACAATTCGCGTCGCAAGTGCAC
GTGCTATCAGCCCCATGCGGCGTCCAGACGGCGATCGCTTCACTGAGATG
CAACCGCTTCCCTCTCAGCGTCGCACTGACTTGATGGCGCCAAAAACGGT
GGGATTCTGGTCAATAATACCTTATATGGCGGCATCCGCCGTTTTTGTTG
GTGCAGCTTGGATAGCCAAGAAACGTTTTACTGCCCGACAGGCTGCTCTT
GTCGATGAATTTGGGCAGGTCATTGTTCTATACGGCACCACTCCGGACGC
AAAGCGGGAGATTGCCTCGGAATACAAGCGGAAACTAGGACCCGGTATTC
TGCGGGGCGCTATGTTTTCTTCTTATCTTGCCACGCTTGTCGCTGAAAAG
GCAATTGTTCCCTCCATCATTCAAGAAGTCTCAATGGTTAAGAAGCTCTT
ACGTGTTGGTGACGACAAGGCCATTAATGCTATAAACAAACTGGCAACAA
CTATGAGTGATTCACCGAGCTTGTTGGGCAAACTTCTTTTTATCACTGAA
AGGGTGTTGAGTCCAGAAAAAGCGGCCGGGTTGCAACTTGTTCCACTATT
TCCCTATAGCGCATCTACCGTTGCGGATCTTCAAAAAAATATGCTTGAAA
GGTGTTATCGCGATTTCGTCACAAACGAAGTTGAAAACAATCAAGTAGAA
GAAGTGCCGTTGGCAGCTGCTGCTGCATTGCGGCTAGACGAAGCGCATGC
GAAACTTGTTTTTGACGGTGTGGTGAAGGATCGCGCTAGACGGCTTGAGG
AAGAAGCAGCAAAGGCTGAGGCGGCTGAAGCAGAAGAAGCTGTCAAATCT
AGCACTGAAGATCTAGATTACCCCGCCAGATCAGGAGAGCCCGCCAAGGC
GACTGTGCACGCGTATCAATGCTCAGATTGCGGATACACATTGTTTCCTG
CGGCTGGGAGAGAGTTTAAATTTTACGGCGACGACTTCGTATGTCCGGCT
TGCGGTGCCCCGAAGGACAAATTTGTGGATATAAATGCTGAAGATCGGTT
TGCTGGTGAGTCTCAAGTGCAGATACGACTGAAGCCAAAGTACCGTGAAC
AGGAACGACTAAAAAGTATAGCGTATGCCGGTCGATTGTATGGTAATGTC
CGGTAA
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