Gvermi6805.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6805.t1
Unique NameGvermi6805.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length90
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2344839..2345181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002501864.1
PFAMsPet100
Max annot lvl33090|Viridiplantae
KEGG koko:K18187
Evalue1.46e-07
EggNOG OGs2CYCQ@1|root,2S3KV@2759|Eukaryota,37W49@33090|Viridiplantae
DescriptionPet100
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6805Gvermi6805Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2344839..2345181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6805.t1Gvermi6805.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2344839..2345181 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6805.t1.stop1Gvermi6805.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2344839..2344841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6805.t1.CDS1Gvermi6805.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2344839..2344976 -
Gvermi6805.t1.CDS2Gvermi6805.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2345050..2345181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6805.t1.exon1Gvermi6805.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2344839..2344976 -
Gvermi6805.t1.exon2Gvermi6805.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2345050..2345181 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6805.t1.intron1Gvermi6805.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2344977..2345049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6805.t1.start1Gvermi6805.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2345179..2345181 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6805.t1 ID=Gvermi6805.t1|Name=Gvermi6805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=90bp
MASGHAGRQWLEALKFSVYVVTPIAATVYLGTGAYPYLERIIRNTSYIVY
PPEGESPPTSTNEIKRAKEERRLKLQRQRAELSMHEKDD*
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spliced messenger RNA

>Gvermi6805.t1 ID=Gvermi6805.t1|Name=Gvermi6805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=270bp|location=Sequence derived from alignment at ScGOVlb_88:2344839..2345181- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAGCGGGCATGCGGGACGACAGTGGCTGGAAGCTTTGAAGTTCAG
CGTTTACGTCGTTACGCCTATAGCTGCAACTGTATATCTTGGAACTGGGG
CCTACCCGTACCTGGAGAGGATTATACGCAATACTTCTTATATTGTTTAT
CCACCTGAAGGCGAATCACCCCCAACGTCTACAAATGAGATAAAGCGTGC
CAAGGAAGAAAGAAGATTGAAGCTCCAAAGGCAACGTGCCGAATTGTCGA
TGCATGAGAAAGATGACTAA
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protein sequence of Gvermi6805.t1

>Gvermi6805.t1 ID=Gvermi6805.t1|Name=Gvermi6805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=90bp
MASGHAGRQWLEALKFSVYVVTPIAATVYLGTGAYPYLERIIRNTSYIVY
PPEGESPPTSTNEIKRAKEERRLKLQRQRAELSMHEKDD*
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mRNA from alignment at ScGOVlb_88:2344839..2345181-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6805.t1 ID=Gvermi6805.t1|Name=Gvermi6805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=343bp|location=Sequence derived from alignment at ScGOVlb_88:2344839..2345181- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTAGCGGGCATGCGGGACGACAGTGGCTGGAAGCTTTGAAGTTCAG
CGTTTACGTCGTTACGCCTATAGCTGCAACTGTATATCTTGGAACTGGGG
CCTACCCGTACCTGGAGAGGATTATACGCAATGTAAGTTGGCATTTAAGT
GGTTGACGCAAAAAGCGCATTAGTGCAAATTCTAACGAGGCGTTTGCCCT
CTCAGACTTCTTATATTGTTTATCCACCTGAAGGCGAATCACCCCCAACG
TCTACAAATGAGATAAAGCGTGCCAAGGAAGAAAGAAGATTGAAGCTCCA
AAGGCAACGTGCCGAATTGTCGATGCATGAGAAAGATGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2344839..2345181-

>Gvermi6805.t1 ID=Gvermi6805.t1|Name=Gvermi6805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=270bp|location=Sequence derived from alignment at ScGOVlb_88:2344839..2345181- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTAGCGGGCATGCGGGACGACAGTGGCTGGAAGCTTTGAAGTTCAG
CGTTTACGTCGTTACGCCTATAGCTGCAACTGTATATCTTGGAACTGGGG
CCTACCCGTACCTGGAGAGGATTATACGCAATACTTCTTATATTGTTTAT
CCACCTGAAGGCGAATCACCCCCAACGTCTACAAATGAGATAAAGCGTGC
CAAGGAAGAAAGAAGATTGAAGCTCCAAAGGCAACGTGCCGAATTGTCGA
TGCATGAGAAAGATGACTAA
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