Gvermi6804.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6804.t1
Unique NameGvermi6804.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2342769..2344196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T013264
PFAMsNuf2
Max annot lvl121069|Pythiales
Evalue4.48e-29
EggNOG OGsKOG4438@1|root,KOG4438@2759|Eukaryota,1MJBM@121069|Pythiales
DescriptionNuf2 family
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6804Gvermi6804Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2342769..2344196 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6804.t1.start1Gvermi6804.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2342769..2342771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6804.t1.CDS1Gvermi6804.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2342769..2344196 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6804.t1.exon1Gvermi6804.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2342769..2344196 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6804.t1.stop1Gvermi6804.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2344194..2344196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6804.t1Gvermi6804.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2342769..2344196 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6804.t1 ID=Gvermi6804.t1|Name=Gvermi6804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=476bp
MALPPSRSRSRPGDHLAPAPEPQATFPFPRMTAAEIQDDMKNIFNCPIAR
ETLKNPSASDAKAVMDFFIEEVYAKRAEDMAQPDFGSLECVDHPELYEQS
IPTMHYISECQKLYQAASFNEFSIRDIVSPEKSRFLWQLSALINYSKFRA
TRQEFFDNMTKQADDLIERERSILAETSNLRLEISNIEEKRAAEEPEVET
VRQTVSEFSMELHELHKQQRALMDETREIKETLAQKNKLCDSLLSQKSKL
KDDNERMAAKVVSSPDRVMGEIDSMRESLESENEHISSLEGERRSLKNLA
EELNLAKQLGKEIYQAAEENISSREKVTELEQKKQECETKNSQFEEEVVT
IEENQEQLNRWLESAEAKIARVEEQQSEIEKGSTEEDDVLVQSRADLLRE
KEKVMQILQEKNREKDEKVNKTAKTLETLKEMFEDWFEVHNTVNGSRTLM
HTNMQKALSAMLEENSRFISSLGDS*
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spliced messenger RNA

>Gvermi6804.t1 ID=Gvermi6804.t1|Name=Gvermi6804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at ScGOVlb_88:2342769..2344196+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTCCTCCATCGCGAAGTCGTAGCCGACCCGGGGATCACCTTGC
CCCAGCCCCAGAACCCCAAGCTACATTTCCGTTCCCAAGAATGACTGCTG
CCGAAATTCAAGATGACATGAAGAACATTTTCAACTGCCCAATAGCTAGG
GAGACCTTAAAGAACCCCTCCGCGTCTGATGCGAAAGCAGTAATGGATTT
TTTTATTGAAGAAGTATACGCCAAGCGAGCTGAGGATATGGCACAGCCAG
ATTTCGGGAGCCTTGAGTGTGTGGACCATCCAGAACTCTATGAGCAGAGT
ATCCCCACAATGCATTACATCAGCGAGTGTCAAAAACTATATCAAGCTGC
AAGCTTTAACGAGTTCAGCATTCGGGATATTGTTTCACCCGAAAAGTCTA
GATTTCTTTGGCAACTCTCAGCGCTCATCAATTACAGCAAATTTCGTGCC
ACTCGACAAGAATTCTTCGACAACATGACGAAACAAGCAGATGATTTGAT
TGAAAGAGAACGGTCGATACTAGCAGAAACTTCTAACCTTCGTCTCGAGA
TTTCTAACATAGAAGAAAAGCGTGCTGCGGAAGAACCAGAAGTTGAAACA
GTGAGACAAACTGTGTCAGAGTTCAGCATGGAACTTCACGAACTCCATAA
ACAGCAAAGAGCGTTAATGGATGAGACTAGGGAAATTAAGGAAACCCTCG
CACAGAAAAACAAGTTGTGCGACTCATTACTATCCCAAAAATCCAAATTA
AAGGATGACAATGAACGTATGGCTGCCAAGGTGGTATCTTCACCTGATCG
TGTCATGGGAGAGATTGATAGTATGCGTGAGTCTCTTGAATCTGAGAATG
AGCACATTTCTTCGTTGGAAGGCGAAAGACGATCCTTGAAGAATCTGGCT
GAAGAGCTAAATCTCGCGAAGCAGTTAGGGAAAGAAATATATCAAGCTGC
GGAAGAGAATATTTCTAGTCGGGAAAAAGTGACAGAGCTAGAACAAAAGA
AACAGGAATGTGAAACCAAAAACTCTCAGTTTGAGGAGGAGGTGGTGACA
ATCGAAGAAAATCAAGAACAACTAAACCGATGGTTGGAATCAGCCGAGGC
AAAAATTGCACGTGTCGAAGAGCAGCAAAGCGAAATTGAGAAAGGAAGTA
CAGAAGAAGATGACGTTCTTGTCCAAAGCCGAGCAGACTTACTGCGCGAG
AAGGAGAAAGTTATGCAAATTTTACAGGAGAAGAATAGAGAAAAGGATGA
AAAGGTGAACAAGACTGCGAAGACCTTGGAAACATTGAAGGAAATGTTTG
AAGATTGGTTTGAGGTACACAACACAGTCAATGGTTCTCGCACACTGATG
CATACAAACATGCAAAAGGCCTTGTCGGCAATGTTAGAAGAAAACAGTAG
ATTCATTTCCAGTCTCGGCGATTCCTGA
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protein sequence of Gvermi6804.t1

>Gvermi6804.t1 ID=Gvermi6804.t1|Name=Gvermi6804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=476bp
MALPPSRSRSRPGDHLAPAPEPQATFPFPRMTAAEIQDDMKNIFNCPIAR
ETLKNPSASDAKAVMDFFIEEVYAKRAEDMAQPDFGSLECVDHPELYEQS
IPTMHYISECQKLYQAASFNEFSIRDIVSPEKSRFLWQLSALINYSKFRA
TRQEFFDNMTKQADDLIERERSILAETSNLRLEISNIEEKRAAEEPEVET
VRQTVSEFSMELHELHKQQRALMDETREIKETLAQKNKLCDSLLSQKSKL
KDDNERMAAKVVSSPDRVMGEIDSMRESLESENEHISSLEGERRSLKNLA
EELNLAKQLGKEIYQAAEENISSREKVTELEQKKQECETKNSQFEEEVVT
IEENQEQLNRWLESAEAKIARVEEQQSEIEKGSTEEDDVLVQSRADLLRE
KEKVMQILQEKNREKDEKVNKTAKTLETLKEMFEDWFEVHNTVNGSRTLM
HTNMQKALSAMLEENSRFISSLGDS*
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mRNA from alignment at ScGOVlb_88:2342769..2344196+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6804.t1 ID=Gvermi6804.t1|Name=Gvermi6804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at ScGOVlb_88:2342769..2344196+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTTCCTCCATCGCGAAGTCGTAGCCGACCCGGGGATCACCTTGC
CCCAGCCCCAGAACCCCAAGCTACATTTCCGTTCCCAAGAATGACTGCTG
CCGAAATTCAAGATGACATGAAGAACATTTTCAACTGCCCAATAGCTAGG
GAGACCTTAAAGAACCCCTCCGCGTCTGATGCGAAAGCAGTAATGGATTT
TTTTATTGAAGAAGTATACGCCAAGCGAGCTGAGGATATGGCACAGCCAG
ATTTCGGGAGCCTTGAGTGTGTGGACCATCCAGAACTCTATGAGCAGAGT
ATCCCCACAATGCATTACATCAGCGAGTGTCAAAAACTATATCAAGCTGC
AAGCTTTAACGAGTTCAGCATTCGGGATATTGTTTCACCCGAAAAGTCTA
GATTTCTTTGGCAACTCTCAGCGCTCATCAATTACAGCAAATTTCGTGCC
ACTCGACAAGAATTCTTCGACAACATGACGAAACAAGCAGATGATTTGAT
TGAAAGAGAACGGTCGATACTAGCAGAAACTTCTAACCTTCGTCTCGAGA
TTTCTAACATAGAAGAAAAGCGTGCTGCGGAAGAACCAGAAGTTGAAACA
GTGAGACAAACTGTGTCAGAGTTCAGCATGGAACTTCACGAACTCCATAA
ACAGCAAAGAGCGTTAATGGATGAGACTAGGGAAATTAAGGAAACCCTCG
CACAGAAAAACAAGTTGTGCGACTCATTACTATCCCAAAAATCCAAATTA
AAGGATGACAATGAACGTATGGCTGCCAAGGTGGTATCTTCACCTGATCG
TGTCATGGGAGAGATTGATAGTATGCGTGAGTCTCTTGAATCTGAGAATG
AGCACATTTCTTCGTTGGAAGGCGAAAGACGATCCTTGAAGAATCTGGCT
GAAGAGCTAAATCTCGCGAAGCAGTTAGGGAAAGAAATATATCAAGCTGC
GGAAGAGAATATTTCTAGTCGGGAAAAAGTGACAGAGCTAGAACAAAAGA
AACAGGAATGTGAAACCAAAAACTCTCAGTTTGAGGAGGAGGTGGTGACA
ATCGAAGAAAATCAAGAACAACTAAACCGATGGTTGGAATCAGCCGAGGC
AAAAATTGCACGTGTCGAAGAGCAGCAAAGCGAAATTGAGAAAGGAAGTA
CAGAAGAAGATGACGTTCTTGTCCAAAGCCGAGCAGACTTACTGCGCGAG
AAGGAGAAAGTTATGCAAATTTTACAGGAGAAGAATAGAGAAAAGGATGA
AAAGGTGAACAAGACTGCGAAGACCTTGGAAACATTGAAGGAAATGTTTG
AAGATTGGTTTGAGGTACACAACACAGTCAATGGTTCTCGCACACTGATG
CATACAAACATGCAAAAGGCCTTGTCGGCAATGTTAGAAGAAAACAGTAG
ATTCATTTCCAGTCTCGGCGATTCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2342769..2344196+

>Gvermi6804.t1 ID=Gvermi6804.t1|Name=Gvermi6804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1428bp|location=Sequence derived from alignment at ScGOVlb_88:2342769..2344196+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTTCCTCCATCGCGAAGTCGTAGCCGACCCGGGGATCACCTTGC
CCCAGCCCCAGAACCCCAAGCTACATTTCCGTTCCCAAGAATGACTGCTG
CCGAAATTCAAGATGACATGAAGAACATTTTCAACTGCCCAATAGCTAGG
GAGACCTTAAAGAACCCCTCCGCGTCTGATGCGAAAGCAGTAATGGATTT
TTTTATTGAAGAAGTATACGCCAAGCGAGCTGAGGATATGGCACAGCCAG
ATTTCGGGAGCCTTGAGTGTGTGGACCATCCAGAACTCTATGAGCAGAGT
ATCCCCACAATGCATTACATCAGCGAGTGTCAAAAACTATATCAAGCTGC
AAGCTTTAACGAGTTCAGCATTCGGGATATTGTTTCACCCGAAAAGTCTA
GATTTCTTTGGCAACTCTCAGCGCTCATCAATTACAGCAAATTTCGTGCC
ACTCGACAAGAATTCTTCGACAACATGACGAAACAAGCAGATGATTTGAT
TGAAAGAGAACGGTCGATACTAGCAGAAACTTCTAACCTTCGTCTCGAGA
TTTCTAACATAGAAGAAAAGCGTGCTGCGGAAGAACCAGAAGTTGAAACA
GTGAGACAAACTGTGTCAGAGTTCAGCATGGAACTTCACGAACTCCATAA
ACAGCAAAGAGCGTTAATGGATGAGACTAGGGAAATTAAGGAAACCCTCG
CACAGAAAAACAAGTTGTGCGACTCATTACTATCCCAAAAATCCAAATTA
AAGGATGACAATGAACGTATGGCTGCCAAGGTGGTATCTTCACCTGATCG
TGTCATGGGAGAGATTGATAGTATGCGTGAGTCTCTTGAATCTGAGAATG
AGCACATTTCTTCGTTGGAAGGCGAAAGACGATCCTTGAAGAATCTGGCT
GAAGAGCTAAATCTCGCGAAGCAGTTAGGGAAAGAAATATATCAAGCTGC
GGAAGAGAATATTTCTAGTCGGGAAAAAGTGACAGAGCTAGAACAAAAGA
AACAGGAATGTGAAACCAAAAACTCTCAGTTTGAGGAGGAGGTGGTGACA
ATCGAAGAAAATCAAGAACAACTAAACCGATGGTTGGAATCAGCCGAGGC
AAAAATTGCACGTGTCGAAGAGCAGCAAAGCGAAATTGAGAAAGGAAGTA
CAGAAGAAGATGACGTTCTTGTCCAAAGCCGAGCAGACTTACTGCGCGAG
AAGGAGAAAGTTATGCAAATTTTACAGGAGAAGAATAGAGAAAAGGATGA
AAAGGTGAACAAGACTGCGAAGACCTTGGAAACATTGAAGGAAATGTTTG
AAGATTGGTTTGAGGTACACAACACAGTCAATGGTTCTCGCACACTGATG
CATACAAACATGCAAAAGGCCTTGTCGGCAATGTTAGAAGAAAACAGTAG
ATTCATTTCCAGTCTCGGCGATTCCTGA
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