Gvermi6801.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6801.t1
Unique NameGvermi6801.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2336192..2337328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog111780.Sta7437_2612
PFAMsSulfotransfer_2
Max annot lvl2|Bacteria
Evalue0.00016
EggNOG OGsCOG4424@1|root,COG4424@2|Bacteria
Descriptioncarbohydrate metabolic process
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6801Gvermi6801Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2336192..2337328 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6801.t1.stop1Gvermi6801.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2336192..2336194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6801.t1.CDS1Gvermi6801.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2336192..2337328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6801.t1.exon1Gvermi6801.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2336192..2337328 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6801.t1.start1Gvermi6801.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2337326..2337328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6801.t1Gvermi6801.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2336192..2337328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6801.t1 ID=Gvermi6801.t1|Name=Gvermi6801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=379bp
MKPPSPWQKERMKQVSKQLIANIVVIVLVCYVILAIEQIRTANCNNSDNI
LRPLNTSLASFLQQHQQQQQQQQQSLQSFEQPASADDISSSLRDTPLSSA
SRSRHERPLPECAASGKPARTFLMVFMGHSGSSALLSELSAHSKIHVEGP
ELVDHQPVFNTTAALQTTREFFDRGIEKGLIPGFKIRPVHIMEEPEEWRK
LVEEYDTRIIWQYRKNFFKAAVGEYKLRFLNDTSVIEGLRSNLTDAKRCQ
VGTCSFPVTDFSFLHGLVKEVWRSQRNIVSGVKIVSRESCIREAPYEDYL
HNRENTLKDMFRFLGIDFEETQPSRFKATSDNLCEVVTNWEELCRKFYVC
PTMAHLLEDENNNCYCPVVSGSTELCEI*
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spliced messenger RNA

>Gvermi6801.t1 ID=Gvermi6801.t1|Name=Gvermi6801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at ScGOVlb_88:2336192..2337328- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCACCGAGTCCGTGGCAGAAAGAAAGAATGAAGCAGGTATCAAA
ACAGCTCATCGCTAACATTGTCGTCATTGTGCTCGTCTGCTACGTTATTT
TGGCCATCGAACAGATCCGCACTGCCAATTGCAACAATAGCGATAATATA
CTGCGTCCCCTCAACACCTCGCTTGCCTCCTTTCTTCAACAACATCAACA
ACAACAACAACAACAACAACAATCCTTACAATCTTTTGAACAGCCTGCTT
CCGCCGATGATATATCATCCTCTTTGCGAGACACTCCTCTCAGCTCAGCT
TCTCGGTCTCGACATGAACGCCCGTTACCTGAGTGCGCCGCCTCTGGAAA
GCCGGCCCGTACTTTTTTGATGGTTTTCATGGGACATTCCGGATCTAGTG
CTCTTTTGTCTGAGCTCTCGGCCCATTCCAAGATTCACGTCGAGGGTCCC
GAACTCGTTGATCACCAGCCGGTCTTCAACACAACCGCCGCGCTTCAGAC
CACTCGCGAATTCTTCGACCGTGGCATTGAGAAGGGCTTAATTCCTGGGT
TCAAGATTCGCCCGGTGCACATCATGGAAGAACCGGAAGAGTGGCGGAAG
CTCGTGGAGGAATATGACACAAGAATAATTTGGCAATACCGCAAAAACTT
CTTCAAAGCAGCCGTTGGAGAATACAAACTGCGGTTTCTCAATGACACCA
GTGTCATTGAAGGATTGAGATCGAACTTGACCGATGCAAAGCGTTGTCAG
GTCGGCACTTGCTCGTTCCCTGTCACGGATTTCTCCTTCTTGCATGGACT
TGTCAAGGAAGTGTGGCGTTCGCAGAGAAACATCGTGTCTGGCGTGAAAA
TTGTCTCGCGTGAGAGTTGTATTCGTGAAGCGCCGTATGAAGATTATCTG
CATAACCGAGAGAATACTTTGAAAGACATGTTCCGATTCCTAGGCATCGA
CTTTGAAGAGACGCAACCATCGCGTTTTAAGGCCACCAGTGACAACCTGT
GTGAAGTCGTAACAAATTGGGAAGAATTGTGCCGAAAGTTCTACGTATGC
CCGACAATGGCGCATTTGCTCGAAGATGAGAATAATAATTGCTACTGTCC
AGTTGTTAGTGGCTCCACGGAGCTGTGTGAGATCTAA
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protein sequence of Gvermi6801.t1

>Gvermi6801.t1 ID=Gvermi6801.t1|Name=Gvermi6801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=379bp
MKPPSPWQKERMKQVSKQLIANIVVIVLVCYVILAIEQIRTANCNNSDNI
LRPLNTSLASFLQQHQQQQQQQQQSLQSFEQPASADDISSSLRDTPLSSA
SRSRHERPLPECAASGKPARTFLMVFMGHSGSSALLSELSAHSKIHVEGP
ELVDHQPVFNTTAALQTTREFFDRGIEKGLIPGFKIRPVHIMEEPEEWRK
LVEEYDTRIIWQYRKNFFKAAVGEYKLRFLNDTSVIEGLRSNLTDAKRCQ
VGTCSFPVTDFSFLHGLVKEVWRSQRNIVSGVKIVSRESCIREAPYEDYL
HNRENTLKDMFRFLGIDFEETQPSRFKATSDNLCEVVTNWEELCRKFYVC
PTMAHLLEDENNNCYCPVVSGSTELCEI*
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mRNA from alignment at ScGOVlb_88:2336192..2337328-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6801.t1 ID=Gvermi6801.t1|Name=Gvermi6801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at ScGOVlb_88:2336192..2337328- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCACCGAGTCCGTGGCAGAAAGAAAGAATGAAGCAGGTATCAAA
ACAGCTCATCGCTAACATTGTCGTCATTGTGCTCGTCTGCTACGTTATTT
TGGCCATCGAACAGATCCGCACTGCCAATTGCAACAATAGCGATAATATA
CTGCGTCCCCTCAACACCTCGCTTGCCTCCTTTCTTCAACAACATCAACA
ACAACAACAACAACAACAACAATCCTTACAATCTTTTGAACAGCCTGCTT
CCGCCGATGATATATCATCCTCTTTGCGAGACACTCCTCTCAGCTCAGCT
TCTCGGTCTCGACATGAACGCCCGTTACCTGAGTGCGCCGCCTCTGGAAA
GCCGGCCCGTACTTTTTTGATGGTTTTCATGGGACATTCCGGATCTAGTG
CTCTTTTGTCTGAGCTCTCGGCCCATTCCAAGATTCACGTCGAGGGTCCC
GAACTCGTTGATCACCAGCCGGTCTTCAACACAACCGCCGCGCTTCAGAC
CACTCGCGAATTCTTCGACCGTGGCATTGAGAAGGGCTTAATTCCTGGGT
TCAAGATTCGCCCGGTGCACATCATGGAAGAACCGGAAGAGTGGCGGAAG
CTCGTGGAGGAATATGACACAAGAATAATTTGGCAATACCGCAAAAACTT
CTTCAAAGCAGCCGTTGGAGAATACAAACTGCGGTTTCTCAATGACACCA
GTGTCATTGAAGGATTGAGATCGAACTTGACCGATGCAAAGCGTTGTCAG
GTCGGCACTTGCTCGTTCCCTGTCACGGATTTCTCCTTCTTGCATGGACT
TGTCAAGGAAGTGTGGCGTTCGCAGAGAAACATCGTGTCTGGCGTGAAAA
TTGTCTCGCGTGAGAGTTGTATTCGTGAAGCGCCGTATGAAGATTATCTG
CATAACCGAGAGAATACTTTGAAAGACATGTTCCGATTCCTAGGCATCGA
CTTTGAAGAGACGCAACCATCGCGTTTTAAGGCCACCAGTGACAACCTGT
GTGAAGTCGTAACAAATTGGGAAGAATTGTGCCGAAAGTTCTACGTATGC
CCGACAATGGCGCATTTGCTCGAAGATGAGAATAATAATTGCTACTGTCC
AGTTGTTAGTGGCTCCACGGAGCTGTGTGAGATCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2336192..2337328-

>Gvermi6801.t1 ID=Gvermi6801.t1|Name=Gvermi6801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1137bp|location=Sequence derived from alignment at ScGOVlb_88:2336192..2337328- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCACCGAGTCCGTGGCAGAAAGAAAGAATGAAGCAGGTATCAAA
ACAGCTCATCGCTAACATTGTCGTCATTGTGCTCGTCTGCTACGTTATTT
TGGCCATCGAACAGATCCGCACTGCCAATTGCAACAATAGCGATAATATA
CTGCGTCCCCTCAACACCTCGCTTGCCTCCTTTCTTCAACAACATCAACA
ACAACAACAACAACAACAACAATCCTTACAATCTTTTGAACAGCCTGCTT
CCGCCGATGATATATCATCCTCTTTGCGAGACACTCCTCTCAGCTCAGCT
TCTCGGTCTCGACATGAACGCCCGTTACCTGAGTGCGCCGCCTCTGGAAA
GCCGGCCCGTACTTTTTTGATGGTTTTCATGGGACATTCCGGATCTAGTG
CTCTTTTGTCTGAGCTCTCGGCCCATTCCAAGATTCACGTCGAGGGTCCC
GAACTCGTTGATCACCAGCCGGTCTTCAACACAACCGCCGCGCTTCAGAC
CACTCGCGAATTCTTCGACCGTGGCATTGAGAAGGGCTTAATTCCTGGGT
TCAAGATTCGCCCGGTGCACATCATGGAAGAACCGGAAGAGTGGCGGAAG
CTCGTGGAGGAATATGACACAAGAATAATTTGGCAATACCGCAAAAACTT
CTTCAAAGCAGCCGTTGGAGAATACAAACTGCGGTTTCTCAATGACACCA
GTGTCATTGAAGGATTGAGATCGAACTTGACCGATGCAAAGCGTTGTCAG
GTCGGCACTTGCTCGTTCCCTGTCACGGATTTCTCCTTCTTGCATGGACT
TGTCAAGGAAGTGTGGCGTTCGCAGAGAAACATCGTGTCTGGCGTGAAAA
TTGTCTCGCGTGAGAGTTGTATTCGTGAAGCGCCGTATGAAGATTATCTG
CATAACCGAGAGAATACTTTGAAAGACATGTTCCGATTCCTAGGCATCGA
CTTTGAAGAGACGCAACCATCGCGTTTTAAGGCCACCAGTGACAACCTGT
GTGAAGTCGTAACAAATTGGGAAGAATTGTGCCGAAAGTTCTACGTATGC
CCGACAATGGCGCATTTGCTCGAAGATGAGAATAATAATTGCTACTGTCC
AGTTGTTAGTGGCTCCACGGAGCTGTGTGAGATCTAA
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