Gvermi6784.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6784.t1
Unique NameGvermi6784.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2274594..2275012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704658.1
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0071704,GO:0140096,GO:1901564
Evalue6.77e-17
EggNOG OGs2A3SY@1|root,2RY5W@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6784Gvermi6784Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2274594..2275012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6784.t1Gvermi6784.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2274594..2275012 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6784.t1.stop1Gvermi6784.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2274594..2274596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6784.t1.CDS1Gvermi6784.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2274594..2274621 -
Gvermi6784.t1.CDS2Gvermi6784.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2274723..2275012 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6784.t1.exon1Gvermi6784.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2274594..2274621 -
Gvermi6784.t1.exon2Gvermi6784.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2274723..2275012 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6784.t1.intron1Gvermi6784.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2274622..2274722 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6784.t1.start1Gvermi6784.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2275010..2275012 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6784.t1 ID=Gvermi6784.t1|Name=Gvermi6784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=106bp
MIDQNAVAIVATMVAGIGGGIALVAWTETQGTRTKQRQNTQPCTECGGQT
TTVCNVCNGSSKDPLNDARPCSYCDGVGNIKCFNCSGSGIQPRFLDRLSP
EDFMD*
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spliced messenger RNA

>Gvermi6784.t1 ID=Gvermi6784.t1|Name=Gvermi6784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp|location=Sequence derived from alignment at ScGOVlb_88:2274594..2275012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGATCAGAACGCCGTCGCAATCGTCGCCACGATGGTGGCGGGCAT
CGGCGGCGGCATCGCGCTGGTTGCCTGGACAGAGACGCAAGGCACCCGCA
CCAAGCAGCGCCAGAACACGCAGCCGTGCACAGAGTGCGGCGGCCAGACC
ACCACCGTGTGCAACGTATGCAACGGCTCCTCCAAGGATCCCTTGAATGA
CGCCAGGCCCTGCTCGTACTGCGACGGCGTGGGAAACATCAAGTGCTTCA
ACTGCTCCGGCTCGGGCATCCAGCCCAGATTTCTTGACAGATTATCTCCG
GAGGACTTTATGGACTAG
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protein sequence of Gvermi6784.t1

>Gvermi6784.t1 ID=Gvermi6784.t1|Name=Gvermi6784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=106bp
MIDQNAVAIVATMVAGIGGGIALVAWTETQGTRTKQRQNTQPCTECGGQT
TTVCNVCNGSSKDPLNDARPCSYCDGVGNIKCFNCSGSGIQPRFLDRLSP
EDFMD*
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mRNA from alignment at ScGOVlb_88:2274594..2275012-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6784.t1 ID=Gvermi6784.t1|Name=Gvermi6784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=419bp|location=Sequence derived from alignment at ScGOVlb_88:2274594..2275012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGATCAGAACGCCGTCGCAATCGTCGCCACGATGGTGGCGGGCAT
CGGCGGCGGCATCGCGCTGGTTGCCTGGACAGAGACGCAAGGCACCCGCA
CCAAGCAGCGCCAGAACACGCAGCCGTGCACAGAGTGCGGCGGCCAGACC
ACCACCGTGTGCAACGTATGCAACGGCTCCTCCAAGGATCCCTTGAATGA
CGCCAGGCCCTGCTCGTACTGCGACGGCGTGGGAAACATCAAGTGCTTCA
ACTGCTCCGGCTCGGGCATCCAGCCCAGATTTCTTGACAGGTTCGTTGCC
ATTTTCGCCGCCCTGAACGCGCGAGTCAAATCACTTGTCAACCCGCAAAT
GCAAACTAACCGAATGTGCTTCACTAAATTGTGTGCCCCAGATTATCTCC
GGAGGACTTTATGGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2274594..2275012-

>Gvermi6784.t1 ID=Gvermi6784.t1|Name=Gvermi6784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=318bp|location=Sequence derived from alignment at ScGOVlb_88:2274594..2275012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGATCAGAACGCCGTCGCAATCGTCGCCACGATGGTGGCGGGCAT
CGGCGGCGGCATCGCGCTGGTTGCCTGGACAGAGACGCAAGGCACCCGCA
CCAAGCAGCGCCAGAACACGCAGCCGTGCACAGAGTGCGGCGGCCAGACC
ACCACCGTGTGCAACGTATGCAACGGCTCCTCCAAGGATCCCTTGAATGA
CGCCAGGCCCTGCTCGTACTGCGACGGCGTGGGAAACATCAAGTGCTTCA
ACTGCTCCGGCTCGGGCATCCAGCCCAGATTTCTTGACAGATTATCTCCG
GAGGACTTTATGGACTAG
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