Gvermi6783.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6783.t1
Unique NameGvermi6783.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2273632..2274351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6783Gvermi6783Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2273632..2274351 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6783.t1.start1Gvermi6783.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2273632..2273634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6783.t1.CDS1Gvermi6783.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2273632..2274351 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6783.t1.exon1Gvermi6783.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2273632..2274351 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6783.t1.stop1Gvermi6783.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2274349..2274351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6783.t1Gvermi6783.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2273632..2274351 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6783.t1 ID=Gvermi6783.t1|Name=Gvermi6783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=240bp
MERVPLLNNSSENIEPAPAAQSPPPQDDQFSGTELSSDTERNDPPSFFDR
IMDSIHAMFMHFCHKLGWFFLRFLSFVMLHCGIICAGVFQMLAFYYTGVL
NLYVMIACFLYAPALVAISIIREEIVVNGTSRSGAGPRLTHEVAIAYLLL
TVFGFCSVLQPLFMHADNVISYKSMWTSIGGTAIFYYCVLISEVLFASAS
NVNRARLRDEELERERTDQPFWIKRYESLRAKESGNPDV*
back to top

spliced messenger RNA

>Gvermi6783.t1 ID=Gvermi6783.t1|Name=Gvermi6783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_88:2273632..2274351+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGGGTGCCTCTCTTAAATAACTCATCTGAAAACATAGAGCCGGC
TCCAGCTGCACAGTCACCACCTCCGCAAGACGACCAGTTTTCAGGCACCG
AGCTTTCGTCTGACACGGAACGAAATGACCCACCCTCATTTTTCGACCGA
ATCATGGACAGCATACATGCAATGTTCATGCACTTTTGCCACAAGCTCGG
TTGGTTCTTTCTACGATTCCTTTCGTTTGTGATGCTACACTGTGGCATAA
TTTGCGCTGGAGTTTTCCAGATGTTGGCATTCTACTACACCGGGGTGCTC
AACCTCTACGTTATGATTGCATGCTTCCTGTACGCCCCCGCGCTGGTCGC
GATATCCATCATTCGAGAAGAGATAGTTGTGAATGGGACGTCACGGTCGG
GCGCTGGACCGAGGCTCACACACGAGGTTGCCATTGCTTATCTGCTACTG
ACAGTGTTTGGGTTTTGCTCCGTGCTCCAGCCTCTGTTCATGCATGCCGA
CAACGTGATTTCCTACAAATCGATGTGGACGAGTATTGGCGGCACGGCTA
TTTTTTATTACTGTGTACTAATCTCCGAAGTTCTGTTTGCAAGTGCTTCC
AATGTGAACAGAGCGAGGCTTCGGGATGAGGAGTTAGAAAGAGAGCGGAC
TGATCAGCCTTTCTGGATCAAACGATATGAATCACTCCGCGCGAAAGAAA
GTGGTAACCCTGACGTATGA
back to top

protein sequence of Gvermi6783.t1

>Gvermi6783.t1 ID=Gvermi6783.t1|Name=Gvermi6783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=240bp
MERVPLLNNSSENIEPAPAAQSPPPQDDQFSGTELSSDTERNDPPSFFDR
IMDSIHAMFMHFCHKLGWFFLRFLSFVMLHCGIICAGVFQMLAFYYTGVL
NLYVMIACFLYAPALVAISIIREEIVVNGTSRSGAGPRLTHEVAIAYLLL
TVFGFCSVLQPLFMHADNVISYKSMWTSIGGTAIFYYCVLISEVLFASAS
NVNRARLRDEELERERTDQPFWIKRYESLRAKESGNPDV*
back to top

mRNA from alignment at ScGOVlb_88:2273632..2274351+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6783.t1 ID=Gvermi6783.t1|Name=Gvermi6783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_88:2273632..2274351+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACGGGTGCCTCTCTTAAATAACTCATCTGAAAACATAGAGCCGGC
TCCAGCTGCACAGTCACCACCTCCGCAAGACGACCAGTTTTCAGGCACCG
AGCTTTCGTCTGACACGGAACGAAATGACCCACCCTCATTTTTCGACCGA
ATCATGGACAGCATACATGCAATGTTCATGCACTTTTGCCACAAGCTCGG
TTGGTTCTTTCTACGATTCCTTTCGTTTGTGATGCTACACTGTGGCATAA
TTTGCGCTGGAGTTTTCCAGATGTTGGCATTCTACTACACCGGGGTGCTC
AACCTCTACGTTATGATTGCATGCTTCCTGTACGCCCCCGCGCTGGTCGC
GATATCCATCATTCGAGAAGAGATAGTTGTGAATGGGACGTCACGGTCGG
GCGCTGGACCGAGGCTCACACACGAGGTTGCCATTGCTTATCTGCTACTG
ACAGTGTTTGGGTTTTGCTCCGTGCTCCAGCCTCTGTTCATGCATGCCGA
CAACGTGATTTCCTACAAATCGATGTGGACGAGTATTGGCGGCACGGCTA
TTTTTTATTACTGTGTACTAATCTCCGAAGTTCTGTTTGCAAGTGCTTCC
AATGTGAACAGAGCGAGGCTTCGGGATGAGGAGTTAGAAAGAGAGCGGAC
TGATCAGCCTTTCTGGATCAAACGATATGAATCACTCCGCGCGAAAGAAA
GTGGTAACCCTGACGTATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2273632..2274351+

>Gvermi6783.t1 ID=Gvermi6783.t1|Name=Gvermi6783.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=720bp|location=Sequence derived from alignment at ScGOVlb_88:2273632..2274351+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACGGGTGCCTCTCTTAAATAACTCATCTGAAAACATAGAGCCGGC
TCCAGCTGCACAGTCACCACCTCCGCAAGACGACCAGTTTTCAGGCACCG
AGCTTTCGTCTGACACGGAACGAAATGACCCACCCTCATTTTTCGACCGA
ATCATGGACAGCATACATGCAATGTTCATGCACTTTTGCCACAAGCTCGG
TTGGTTCTTTCTACGATTCCTTTCGTTTGTGATGCTACACTGTGGCATAA
TTTGCGCTGGAGTTTTCCAGATGTTGGCATTCTACTACACCGGGGTGCTC
AACCTCTACGTTATGATTGCATGCTTCCTGTACGCCCCCGCGCTGGTCGC
GATATCCATCATTCGAGAAGAGATAGTTGTGAATGGGACGTCACGGTCGG
GCGCTGGACCGAGGCTCACACACGAGGTTGCCATTGCTTATCTGCTACTG
ACAGTGTTTGGGTTTTGCTCCGTGCTCCAGCCTCTGTTCATGCATGCCGA
CAACGTGATTTCCTACAAATCGATGTGGACGAGTATTGGCGGCACGGCTA
TTTTTTATTACTGTGTACTAATCTCCGAAGTTCTGTTTGCAAGTGCTTCC
AATGTGAACAGAGCGAGGCTTCGGGATGAGGAGTTAGAAAGAGAGCGGAC
TGATCAGCCTTTCTGGATCAAACGATATGAATCACTCCGCGCGAAAGAAA
GTGGTAACCCTGACGTATGA
back to top