Gvermi6749.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6749.t1
Unique NameGvermi6749.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2148490..2149092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8128.ENSONIP00000019297
Preferred namePINX1
PFAMsG-patch
Max annot lvl33208|Metazoa
KEGG koko:K11135
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000781,GO:0000784,GO:0000793,GO:0000819,GO:0003674,GO:0003676,GO:0003723,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007080,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010521,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0015630,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042127,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051276,GO:0051303,GO:0051310,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0051972,GO:0051974,GO:0060249,GO:0060255,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070198,GO:0070727,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1900180,GO:1900182,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902570,GO:1902749,GO:1902750,GO:1903047,GO:1903320,GO:1903321,GO:1903827,GO:1903829,GO:1904356,GO:1904357,GO:1904742,GO:1904744,GO:1904749,GO:1904751,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Evalue3.48e-14
EggNOG OGsKOG2809@1|root,KOG2809@2759|Eukaryota,39E7U@33154|Opisthokonta,3BFW9@33208|Metazoa,3CY2T@33213|Bilateria,488GF@7711|Chordata,48W68@7742|Vertebrata,49Q43@7898|Actinopterygii
Descriptiontelomerase inhibitor 1
COG categoryAD
BRITEko00000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6749Gvermi6749Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2148490..2149092 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6749.t1.start1Gvermi6749.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2148490..2148492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6749.t1.CDS1Gvermi6749.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2148490..2149092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6749.t1.exon1Gvermi6749.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2148490..2149092 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6749.t1.stop1Gvermi6749.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2149090..2149092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6749.t1Gvermi6749.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2148490..2149092 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6749.t1 ID=Gvermi6749.t1|Name=Gvermi6749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=201bp
MAGAVDTRNQAWVNDKSRFGLKMLQRMGWSEGKGLGREENGRLDPLRAKK
NFDKEGLGVSVVKTSAWDAPAQMAQGLNSVLAKLASSHCGSARQGAGVEN
TAGRAVGFYARRAAQKDVKAYSPDALREILGGVGGAKRAEEERKPALLSD
DVPAVPSKIKRVRGEKRKRKESDMLGVASKIRKKHKADKKKRKRKKEKTK
*
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spliced messenger RNA

>Gvermi6749.t1 ID=Gvermi6749.t1|Name=Gvermi6749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=603bp|location=Sequence derived from alignment at ScGOVlb_88:2148490..2149092+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCGCCGTCGACACCCGCAACCAGGCATGGGTGAACGACAAGTC
TCGCTTCGGGCTCAAAATGCTCCAGAGAATGGGCTGGAGCGAGGGGAAGG
GCCTCGGGCGCGAGGAGAATGGCAGGCTGGACCCGCTGCGCGCGAAGAAG
AATTTTGACAAGGAAGGCCTGGGCGTTTCCGTTGTCAAGACCAGCGCGTG
GGACGCCCCGGCTCAAATGGCGCAGGGGCTGAACAGCGTGCTCGCCAAAT
TGGCCTCAAGCCACTGCGGCTCGGCGAGACAAGGCGCTGGGGTGGAGAAT
ACCGCTGGTCGAGCGGTTGGTTTTTATGCAAGGAGAGCGGCGCAGAAGGA
CGTTAAGGCGTACTCACCAGACGCTCTACGGGAGATTCTTGGAGGCGTGG
GCGGTGCTAAGCGAGCAGAAGAGGAGCGTAAGCCTGCTTTGCTTTCGGAT
GATGTTCCGGCGGTGCCATCGAAGATTAAGCGCGTTCGTGGTGAAAAACG
CAAGCGAAAAGAGTCTGACATGCTTGGTGTTGCTTCCAAGATACGAAAAA
AACACAAAGCTGACAAGAAGAAGCGCAAAAGAAAGAAAGAAAAGACCAAA
TAA
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protein sequence of Gvermi6749.t1

>Gvermi6749.t1 ID=Gvermi6749.t1|Name=Gvermi6749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=201bp
MAGAVDTRNQAWVNDKSRFGLKMLQRMGWSEGKGLGREENGRLDPLRAKK
NFDKEGLGVSVVKTSAWDAPAQMAQGLNSVLAKLASSHCGSARQGAGVEN
TAGRAVGFYARRAAQKDVKAYSPDALREILGGVGGAKRAEEERKPALLSD
DVPAVPSKIKRVRGEKRKRKESDMLGVASKIRKKHKADKKKRKRKKEKTK
*
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mRNA from alignment at ScGOVlb_88:2148490..2149092+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6749.t1 ID=Gvermi6749.t1|Name=Gvermi6749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=603bp|location=Sequence derived from alignment at ScGOVlb_88:2148490..2149092+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGCGCCGTCGACACCCGCAACCAGGCATGGGTGAACGACAAGTC
TCGCTTCGGGCTCAAAATGCTCCAGAGAATGGGCTGGAGCGAGGGGAAGG
GCCTCGGGCGCGAGGAGAATGGCAGGCTGGACCCGCTGCGCGCGAAGAAG
AATTTTGACAAGGAAGGCCTGGGCGTTTCCGTTGTCAAGACCAGCGCGTG
GGACGCCCCGGCTCAAATGGCGCAGGGGCTGAACAGCGTGCTCGCCAAAT
TGGCCTCAAGCCACTGCGGCTCGGCGAGACAAGGCGCTGGGGTGGAGAAT
ACCGCTGGTCGAGCGGTTGGTTTTTATGCAAGGAGAGCGGCGCAGAAGGA
CGTTAAGGCGTACTCACCAGACGCTCTACGGGAGATTCTTGGAGGCGTGG
GCGGTGCTAAGCGAGCAGAAGAGGAGCGTAAGCCTGCTTTGCTTTCGGAT
GATGTTCCGGCGGTGCCATCGAAGATTAAGCGCGTTCGTGGTGAAAAACG
CAAGCGAAAAGAGTCTGACATGCTTGGTGTTGCTTCCAAGATACGAAAAA
AACACAAAGCTGACAAGAAGAAGCGCAAAAGAAAGAAAGAAAAGACCAAA
TAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2148490..2149092+

>Gvermi6749.t1 ID=Gvermi6749.t1|Name=Gvermi6749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=603bp|location=Sequence derived from alignment at ScGOVlb_88:2148490..2149092+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGCGCCGTCGACACCCGCAACCAGGCATGGGTGAACGACAAGTC
TCGCTTCGGGCTCAAAATGCTCCAGAGAATGGGCTGGAGCGAGGGGAAGG
GCCTCGGGCGCGAGGAGAATGGCAGGCTGGACCCGCTGCGCGCGAAGAAG
AATTTTGACAAGGAAGGCCTGGGCGTTTCCGTTGTCAAGACCAGCGCGTG
GGACGCCCCGGCTCAAATGGCGCAGGGGCTGAACAGCGTGCTCGCCAAAT
TGGCCTCAAGCCACTGCGGCTCGGCGAGACAAGGCGCTGGGGTGGAGAAT
ACCGCTGGTCGAGCGGTTGGTTTTTATGCAAGGAGAGCGGCGCAGAAGGA
CGTTAAGGCGTACTCACCAGACGCTCTACGGGAGATTCTTGGAGGCGTGG
GCGGTGCTAAGCGAGCAGAAGAGGAGCGTAAGCCTGCTTTGCTTTCGGAT
GATGTTCCGGCGGTGCCATCGAAGATTAAGCGCGTTCGTGGTGAAAAACG
CAAGCGAAAAGAGTCTGACATGCTTGGTGTTGCTTCCAAGATACGAAAAA
AACACAAAGCTGACAAGAAGAAGCGCAAAAGAAAGAAAGAAAAGACCAAA
TAA
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