Gvermi6721.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6721.t1
Unique NameGvermi6721.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2090335..2091726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000014882
Preferred nameHDAC8
PFAMsHist_deacetyl
Max annot lvl33208|Metazoa
KEGG koko:K11405
KEGG Pathwayko05034,ko05165,ko05203,map05034,map05165,map05203
GOsGO:0000118,GO:0000122,GO:0000228,GO:0000819,GO:0003674,GO:0003682,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006325,GO:0006333,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0008134,GO:0008150,GO:0008152,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010639,GO:0014070,GO:0016020,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0030278,GO:0030279,GO:0030544,GO:0031056,GO:0031057,GO:0031072,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032204,GO:0032268,GO:0032269,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033558,GO:0033993,GO:0035065,GO:0035067,GO:0035601,GO:0035690,GO:0035983,GO:0035984,GO:0036211,GO:0042221,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045596,GO:0045667,GO:0045668,GO:0045892,GO:0045934,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051093,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0051879,GO:0051983,GO:0060255,GO:0060341,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071236,GO:0071310,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071922,GO:0071944,GO:0080090,GO:0097305,GO:0097306,GO:0098732,GO:0098813,GO:0140096,GO:1901564,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901983,GO:1901984,GO:1902275,GO:1902494,GO:1902679,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903827,GO:1904321,GO:1904322,GO:1905268,GO:1905634,GO:2000112,GO:2000113,GO:2000615,GO:2000616,GO:2000756,GO:2000757,GO:2001141,GO:2001251
Evalue1.2e-71
EggNOG OGsCOG0123@1|root,KOG1342@2759|Eukaryota,39A51@33154|Opisthokonta,3BHVW@33208|Metazoa,3CTW7@33213|Bilateria,489QE@7711|Chordata,48WTU@7742|Vertebrata,49RJS@7898|Actinopterygii
EC3.5.1.98
DescriptionBelongs to the histone deacetylase family. HD Type 1 subfamily
COG categoryB
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6721Gvermi6721Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2090335..2091726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6721.t1Gvermi6721.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2090335..2091726 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6721.t1.stop1Gvermi6721.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2090335..2090337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6721.t1.CDS1Gvermi6721.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2090335..2091092 -
Gvermi6721.t1.CDS2Gvermi6721.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2091177..2091726 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6721.t1.exon1Gvermi6721.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2090335..2091092 -
Gvermi6721.t1.exon2Gvermi6721.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2091177..2091726 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6721.t1.intron1Gvermi6721.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2091093..2091176 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6721.t1.start1Gvermi6721.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2091724..2091726 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6721.t1 ID=Gvermi6721.t1|Name=Gvermi6721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=436bp
MSLRSPEQQYDGLKESLSNSRRKVVYVPPSDSFKSLDSISKHGQRSAIVH
SLIRACGLEGLCDVQPLRVATLSEALLAHTRHYLSILRGASTFYHGEVDE
DCAFSELDDIDFGNEEERRMLLEEAGLIDDCPIFPGVWELGLLTVGGAVI
AAERLISNGAKVACWFDGGRHHAMYDSAHGFCYLNDAVVACKVLLSQRDI
SHVLYIDIDIHHGDGVEESFLYDNTVTTVSFHLAERGFYPGTGHEILPRQ
EPAYCGAIRIPLHRGIRNDAYIHLFDNVMNTVIDYHQPDVFVLQCGCDGV
AGDPLGGFNLTAEAYTACVEHLLGFKIPLLILGGGGYNSTNAAKVWTDVL
QTCIEHVSEFDGESGQLRFARDVPLHDDYFDLYGPTFTRDIKPLPMDDEN
TYSYLRQTSAVVKNIFLRESPLDETKTISEVRNPR*
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spliced messenger RNA

>Gvermi6721.t1 ID=Gvermi6721.t1|Name=Gvermi6721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at ScGOVlb_88:2090335..2091726- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTAAGAAGCCCGGAGCAACAGTACGATGGTCTGAAGGAAAGCCT
TTCAAACTCGAGAAGAAAAGTTGTTTACGTCCCACCTTCGGATAGTTTTA
AATCCCTGGACTCGATTTCAAAGCACGGACAGAGATCAGCAATAGTTCAT
TCTTTAATTCGCGCCTGCGGACTGGAAGGTCTTTGTGATGTGCAGCCGCT
TCGGGTAGCTACATTATCGGAGGCGCTGTTGGCACACACTCGTCACTACC
TCAGTATATTGCGAGGAGCCTCTACGTTTTATCACGGAGAAGTCGATGAG
GATTGCGCTTTTTCGGAACTCGATGATATTGATTTTGGAAATGAAGAGGA
AAGACGGATGCTCCTCGAAGAAGCAGGACTCATCGACGACTGTCCTATTT
TTCCAGGAGTTTGGGAACTTGGTTTGCTTACGGTTGGTGGTGCGGTTATT
GCCGCCGAGCGGCTTATTTCTAATGGCGCTAAGGTTGCCTGTTGGTTCGA
CGGTGGTCGCCATCATGCTATGTATGACTCAGCCCACGGGTTCTGCTATT
TGAATGATGCGGTCGTTGCTTGCAAGGTCCTTTTATCTCAAAGAGATATT
TCCCACGTGCTATACATTGACATTGACATACATCACGGCGACGGTGTGGA
AGAATCGTTTCTCTACGATAATACGGTCACAACTGTTTCGTTTCATCTCG
CCGAACGAGGATTTTATCCGGGGACTGGTCATGAGATTCTGCCGAGACAA
GAACCAGCATATTGCGGCGCTATACGTATCCCTCTTCATCGTGGGATAAG
GAATGATGCCTATATCCATCTTTTCGACAATGTCATGAATACGGTCATAG
ATTATCATCAGCCTGACGTTTTCGTACTCCAGTGTGGTTGCGACGGTGTA
GCAGGAGATCCGTTAGGTGGTTTCAATCTTACTGCTGAAGCGTACACTGC
ATGCGTGGAACACCTCCTCGGTTTCAAGATTCCCTTGCTCATTCTGGGAG
GCGGGGGTTACAACTCCACAAATGCCGCAAAGGTATGGACAGATGTCCTT
CAAACATGTATTGAACACGTCTCCGAGTTTGACGGTGAGAGTGGTCAATT
ACGTTTTGCTAGGGACGTACCTCTTCATGACGATTACTTCGATCTTTATG
GACCTACTTTCACACGAGATATAAAACCACTTCCTATGGACGACGAGAAT
ACATATTCATATTTGAGACAGACATCTGCCGTCGTAAAGAATATTTTCTT
ACGAGAATCACCCTTAGACGAAACAAAAACTATCTCAGAAGTTAGAAACC
CACGGTAA
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protein sequence of Gvermi6721.t1

>Gvermi6721.t1 ID=Gvermi6721.t1|Name=Gvermi6721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=436bp
MSLRSPEQQYDGLKESLSNSRRKVVYVPPSDSFKSLDSISKHGQRSAIVH
SLIRACGLEGLCDVQPLRVATLSEALLAHTRHYLSILRGASTFYHGEVDE
DCAFSELDDIDFGNEEERRMLLEEAGLIDDCPIFPGVWELGLLTVGGAVI
AAERLISNGAKVACWFDGGRHHAMYDSAHGFCYLNDAVVACKVLLSQRDI
SHVLYIDIDIHHGDGVEESFLYDNTVTTVSFHLAERGFYPGTGHEILPRQ
EPAYCGAIRIPLHRGIRNDAYIHLFDNVMNTVIDYHQPDVFVLQCGCDGV
AGDPLGGFNLTAEAYTACVEHLLGFKIPLLILGGGGYNSTNAAKVWTDVL
QTCIEHVSEFDGESGQLRFARDVPLHDDYFDLYGPTFTRDIKPLPMDDEN
TYSYLRQTSAVVKNIFLRESPLDETKTISEVRNPR*
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mRNA from alignment at ScGOVlb_88:2090335..2091726-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6721.t1 ID=Gvermi6721.t1|Name=Gvermi6721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_88:2090335..2091726- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCTAAGAAGCCCGGAGCAACAGTACGATGGTCTGAAGGAAAGCCT
TTCAAACTCGAGAAGAAAAGTTGTTTACGTCCCACCTTCGGATAGTTTTA
AATCCCTGGACTCGATTTCAAAGCACGGACAGAGATCAGCAATAGTTCAT
TCTTTAATTCGCGCCTGCGGACTGGAAGGTCTTTGTGATGTGCAGCCGCT
TCGGGTAGCTACATTATCGGAGGCGCTGTTGGCACACACTCGTCACTACC
TCAGTATATTGCGAGGAGCCTCTACGTTTTATCACGGAGAAGTCGATGAG
GATTGCGCTTTTTCGGAACTCGATGATATTGATTTTGGAAATGAAGAGGA
AAGACGGATGCTCCTCGAAGAAGCAGGACTCATCGACGACTGTCCTATTT
TTCCAGGAGTTTGGGAACTTGGTTTGCTTACGGTTGGTGGTGCGGTTATT
GCCGCCGAGCGGCTTATTTCTAATGGCGCTAAGGTTGCCTGTTGGTTCGA
CGGTGGTCGCCATCATGCTATGTATGACTCAGCCCACGGGTTCTGCTATT
GTAATGACTGATATCTTTCTTTTTAAATGTACCAGCGGCATGACACGGAT
TTTCATTGTACTAACCATCTTTTTAAATGCGCAGTGAATGATGCGGTCGT
TGCTTGCAAGGTCCTTTTATCTCAAAGAGATATTTCCCACGTGCTATACA
TTGACATTGACATACATCACGGCGACGGTGTGGAAGAATCGTTTCTCTAC
GATAATACGGTCACAACTGTTTCGTTTCATCTCGCCGAACGAGGATTTTA
TCCGGGGACTGGTCATGAGATTCTGCCGAGACAAGAACCAGCATATTGCG
GCGCTATACGTATCCCTCTTCATCGTGGGATAAGGAATGATGCCTATATC
CATCTTTTCGACAATGTCATGAATACGGTCATAGATTATCATCAGCCTGA
CGTTTTCGTACTCCAGTGTGGTTGCGACGGTGTAGCAGGAGATCCGTTAG
GTGGTTTCAATCTTACTGCTGAAGCGTACACTGCATGCGTGGAACACCTC
CTCGGTTTCAAGATTCCCTTGCTCATTCTGGGAGGCGGGGGTTACAACTC
CACAAATGCCGCAAAGGTATGGACAGATGTCCTTCAAACATGTATTGAAC
ACGTCTCCGAGTTTGACGGTGAGAGTGGTCAATTACGTTTTGCTAGGGAC
GTACCTCTTCATGACGATTACTTCGATCTTTATGGACCTACTTTCACACG
AGATATAAAACCACTTCCTATGGACGACGAGAATACATATTCATATTTGA
GACAGACATCTGCCGTCGTAAAGAATATTTTCTTACGAGAATCACCCTTA
GACGAAACAAAAACTATCTCAGAAGTTAGAAACCCACGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2090335..2091726-

>Gvermi6721.t1 ID=Gvermi6721.t1|Name=Gvermi6721.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1308bp|location=Sequence derived from alignment at ScGOVlb_88:2090335..2091726- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCTAAGAAGCCCGGAGCAACAGTACGATGGTCTGAAGGAAAGCCT
TTCAAACTCGAGAAGAAAAGTTGTTTACGTCCCACCTTCGGATAGTTTTA
AATCCCTGGACTCGATTTCAAAGCACGGACAGAGATCAGCAATAGTTCAT
TCTTTAATTCGCGCCTGCGGACTGGAAGGTCTTTGTGATGTGCAGCCGCT
TCGGGTAGCTACATTATCGGAGGCGCTGTTGGCACACACTCGTCACTACC
TCAGTATATTGCGAGGAGCCTCTACGTTTTATCACGGAGAAGTCGATGAG
GATTGCGCTTTTTCGGAACTCGATGATATTGATTTTGGAAATGAAGAGGA
AAGACGGATGCTCCTCGAAGAAGCAGGACTCATCGACGACTGTCCTATTT
TTCCAGGAGTTTGGGAACTTGGTTTGCTTACGGTTGGTGGTGCGGTTATT
GCCGCCGAGCGGCTTATTTCTAATGGCGCTAAGGTTGCCTGTTGGTTCGA
CGGTGGTCGCCATCATGCTATGTATGACTCAGCCCACGGGTTCTGCTATT
TGAATGATGCGGTCGTTGCTTGCAAGGTCCTTTTATCTCAAAGAGATATT
TCCCACGTGCTATACATTGACATTGACATACATCACGGCGACGGTGTGGA
AGAATCGTTTCTCTACGATAATACGGTCACAACTGTTTCGTTTCATCTCG
CCGAACGAGGATTTTATCCGGGGACTGGTCATGAGATTCTGCCGAGACAA
GAACCAGCATATTGCGGCGCTATACGTATCCCTCTTCATCGTGGGATAAG
GAATGATGCCTATATCCATCTTTTCGACAATGTCATGAATACGGTCATAG
ATTATCATCAGCCTGACGTTTTCGTACTCCAGTGTGGTTGCGACGGTGTA
GCAGGAGATCCGTTAGGTGGTTTCAATCTTACTGCTGAAGCGTACACTGC
ATGCGTGGAACACCTCCTCGGTTTCAAGATTCCCTTGCTCATTCTGGGAG
GCGGGGGTTACAACTCCACAAATGCCGCAAAGGTATGGACAGATGTCCTT
CAAACATGTATTGAACACGTCTCCGAGTTTGACGGTGAGAGTGGTCAATT
ACGTTTTGCTAGGGACGTACCTCTTCATGACGATTACTTCGATCTTTATG
GACCTACTTTCACACGAGATATAAAACCACTTCCTATGGACGACGAGAAT
ACATATTCATATTTGAGACAGACATCTGCCGTCGTAAAGAATATTTTCTT
ACGAGAATCACCCTTAGACGAAACAAAAACTATCTCAGAAGTTAGAAACC
CACGGTAA
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