Gvermi6718.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6718.t2
Unique NameGvermi6718.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2085622..2086440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6718Gvermi6718Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2084572..2086440 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6718.t2.start1Gvermi6718.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2085622..2085624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6718.t2.CDS1Gvermi6718.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2085622..2086440 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6718.t2.exon1Gvermi6718.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2085622..2086440 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6718.t2.stop1Gvermi6718.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2086438..2086440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6718.t2Gvermi6718.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2085622..2086440 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6718.t2 ID=Gvermi6718.t2|Name=Gvermi6718.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=273bp
MAKHPSPRFMKTAIMALTSVGLVEKAENLFHEVGQSHPSGVPDEETFGNL
MAGYGNHLQLMPAEVADEVLANGKLEEVNKKADQLWGLYLKHHRTLKIGS
LRLSQRNMMIGNYLRVKIRSYRIKEAVDILEVLVVSRDMYPTLNVGIGHI
CSTLGAIELCCDVLQLERLTEIMRQGGIKHDMRSLAFAVGTYVGDGNLSA
ALKLVEQHFADVTENETVSSQFRNHHPQLLFRRMQTLRSALRDSGIKKLK
TLDDSLRNFERRHAMGGSSASG*
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spliced messenger RNA

>Gvermi6718.t2 ID=Gvermi6718.t2|Name=Gvermi6718.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=819bp|location=Sequence derived from alignment at ScGOVlb_88:2085622..2086440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGCACCCATCCCCTAGGTTTATGAAAACCGCTATTATGGCTTT
GACATCTGTTGGACTAGTCGAAAAGGCCGAGAATCTGTTTCACGAGGTCG
GACAGTCCCACCCCTCTGGAGTGCCGGATGAAGAAACTTTTGGCAATTTG
ATGGCTGGATACGGAAATCATCTACAACTGATGCCTGCTGAGGTCGCAGA
TGAAGTGTTAGCAAACGGGAAATTGGAAGAGGTGAACAAGAAAGCTGATC
AGCTGTGGGGGTTATATTTGAAGCATCATAGAACACTCAAGATTGGAAGT
CTGCGACTCTCTCAAAGGAATATGATGATTGGTAACTACTTGCGAGTCAA
GATACGAAGCTACAGGATAAAGGAAGCAGTAGATATTTTAGAAGTTCTTG
TGGTTTCACGGGACATGTACCCGACATTGAATGTAGGCATCGGACATATT
TGCTCGACATTGGGTGCAATAGAGTTATGTTGTGACGTATTACAACTGGA
ACGATTAACTGAAATTATGCGACAAGGGGGAATCAAACACGACATGCGCT
CTCTCGCATTTGCCGTGGGTACCTACGTCGGGGATGGAAATTTATCAGCA
GCTCTCAAATTAGTGGAGCAGCATTTCGCAGACGTGACCGAGAATGAGAC
TGTATCCTCGCAGTTTCGAAATCACCATCCGCAACTTTTATTTAGGCGCA
TGCAAACTTTGAGAAGTGCCTTGAGAGACTCAGGTATCAAGAAACTGAAA
ACGTTGGATGATTCGTTGAGGAATTTTGAAAGAAGACATGCCATGGGAGG
AAGTTCGGCTTCCGGCTAG
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protein sequence of Gvermi6718.t2

>Gvermi6718.t2 ID=Gvermi6718.t2|Name=Gvermi6718.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=273bp
MAKHPSPRFMKTAIMALTSVGLVEKAENLFHEVGQSHPSGVPDEETFGNL
MAGYGNHLQLMPAEVADEVLANGKLEEVNKKADQLWGLYLKHHRTLKIGS
LRLSQRNMMIGNYLRVKIRSYRIKEAVDILEVLVVSRDMYPTLNVGIGHI
CSTLGAIELCCDVLQLERLTEIMRQGGIKHDMRSLAFAVGTYVGDGNLSA
ALKLVEQHFADVTENETVSSQFRNHHPQLLFRRMQTLRSALRDSGIKKLK
TLDDSLRNFERRHAMGGSSASG*
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mRNA from alignment at ScGOVlb_88:2085622..2086440+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6718.t2 ID=Gvermi6718.t2|Name=Gvermi6718.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=819bp|location=Sequence derived from alignment at ScGOVlb_88:2085622..2086440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGAAGCACCCATCCCCTAGGTTTATGAAAACCGCTATTATGGCTTT
GACATCTGTTGGACTAGTCGAAAAGGCCGAGAATCTGTTTCACGAGGTCG
GACAGTCCCACCCCTCTGGAGTGCCGGATGAAGAAACTTTTGGCAATTTG
ATGGCTGGATACGGAAATCATCTACAACTGATGCCTGCTGAGGTCGCAGA
TGAAGTGTTAGCAAACGGGAAATTGGAAGAGGTGAACAAGAAAGCTGATC
AGCTGTGGGGGTTATATTTGAAGCATCATAGAACACTCAAGATTGGAAGT
CTGCGACTCTCTCAAAGGAATATGATGATTGGTAACTACTTGCGAGTCAA
GATACGAAGCTACAGGATAAAGGAAGCAGTAGATATTTTAGAAGTTCTTG
TGGTTTCACGGGACATGTACCCGACATTGAATGTAGGCATCGGACATATT
TGCTCGACATTGGGTGCAATAGAGTTATGTTGTGACGTATTACAACTGGA
ACGATTAACTGAAATTATGCGACAAGGGGGAATCAAACACGACATGCGCT
CTCTCGCATTTGCCGTGGGTACCTACGTCGGGGATGGAAATTTATCAGCA
GCTCTCAAATTAGTGGAGCAGCATTTCGCAGACGTGACCGAGAATGAGAC
TGTATCCTCGCAGTTTCGAAATCACCATCCGCAACTTTTATTTAGGCGCA
TGCAAACTTTGAGAAGTGCCTTGAGAGACTCAGGTATCAAGAAACTGAAA
ACGTTGGATGATTCGTTGAGGAATTTTGAAAGAAGACATGCCATGGGAGG
AAGTTCGGCTTCCGGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2085622..2086440+

>Gvermi6718.t2 ID=Gvermi6718.t2|Name=Gvermi6718.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=819bp|location=Sequence derived from alignment at ScGOVlb_88:2085622..2086440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGAAGCACCCATCCCCTAGGTTTATGAAAACCGCTATTATGGCTTT
GACATCTGTTGGACTAGTCGAAAAGGCCGAGAATCTGTTTCACGAGGTCG
GACAGTCCCACCCCTCTGGAGTGCCGGATGAAGAAACTTTTGGCAATTTG
ATGGCTGGATACGGAAATCATCTACAACTGATGCCTGCTGAGGTCGCAGA
TGAAGTGTTAGCAAACGGGAAATTGGAAGAGGTGAACAAGAAAGCTGATC
AGCTGTGGGGGTTATATTTGAAGCATCATAGAACACTCAAGATTGGAAGT
CTGCGACTCTCTCAAAGGAATATGATGATTGGTAACTACTTGCGAGTCAA
GATACGAAGCTACAGGATAAAGGAAGCAGTAGATATTTTAGAAGTTCTTG
TGGTTTCACGGGACATGTACCCGACATTGAATGTAGGCATCGGACATATT
TGCTCGACATTGGGTGCAATAGAGTTATGTTGTGACGTATTACAACTGGA
ACGATTAACTGAAATTATGCGACAAGGGGGAATCAAACACGACATGCGCT
CTCTCGCATTTGCCGTGGGTACCTACGTCGGGGATGGAAATTTATCAGCA
GCTCTCAAATTAGTGGAGCAGCATTTCGCAGACGTGACCGAGAATGAGAC
TGTATCCTCGCAGTTTCGAAATCACCATCCGCAACTTTTATTTAGGCGCA
TGCAAACTTTGAGAAGTGCCTTGAGAGACTCAGGTATCAAGAAACTGAAA
ACGTTGGATGATTCGTTGAGGAATTTTGAAAGAAGACATGCCATGGGAGG
AAGTTCGGCTTCCGGCTAG
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