Gvermi6683.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6683.t1
Unique NameGvermi6683.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1927518..1930205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6683Gvermi6683Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1927518..1930205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6683.t1Gvermi6683.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1927518..1930205 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6683.t1.start1Gvermi6683.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1927518..1927520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6683.t1.CDS1Gvermi6683.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1927518..1927539 +
Gvermi6683.t1.CDS2Gvermi6683.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1928019..1928053 +
Gvermi6683.t1.CDS3Gvermi6683.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1928307..1928315 +
Gvermi6683.t1.CDS4Gvermi6683.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1929891..1930205 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6683.t1.exon1Gvermi6683.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1927518..1927539 +
Gvermi6683.t1.exon2Gvermi6683.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1928019..1928053 +
Gvermi6683.t1.exon3Gvermi6683.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1928307..1928315 +
Gvermi6683.t1.exon4Gvermi6683.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1929891..1930205 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6683.t1.intron1Gvermi6683.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1927540..1928018 +
Gvermi6683.t1.intron2Gvermi6683.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1928054..1928306 +
Gvermi6683.t1.intron3Gvermi6683.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1928316..1929890 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6683.t1.stop1Gvermi6683.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1930203..1930205 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6683.t1 ID=Gvermi6683.t1|Name=Gvermi6683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=127bp
LRADRAQPHVATSRPAPTSPFCLPPLNTDPDEAQLQLIRNGDFSQLRKLR
KMGERRKRTVRFMASVCHDADSLERIALTPKGEQRPPESPPAPAQQQSAE
KSQHKPDKDGRMSIFGIKFGKLHTRR*
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spliced messenger RNA

>Gvermi6683.t1 ID=Gvermi6683.t1|Name=Gvermi6683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=381bp|location=Sequence derived from alignment at ScGOVlb_88:1927518..1930205+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ttgcgcgccgatcgcgctcagcCGCATGTCGCCACATCGCGCCCCGCACC
CACCTCGCCTTTTTGTctgccgccgcTCAACACCGACCCGGACGAGGCGC
AGCTGCAGTTGATCAGGAACGGCGACTTCTCGCAGCTGCGAAAGCTGCGC
AAGATGGGCGAGCGCCGCAAGCGCACCGTCCGCTTCATGGCGTCCGTCTG
TCACGACGCCGACTCGCTCGAGCGCATTGCCCTCACCCCGAAGGGCGAGC
AGCGCCCCCCCGAATCGCCGCCCGCCCCCGCGCAGCAGCAGAGCGCCGAG
AAGAGCCAGCACAAGCCAGACAAGGACGGCCGCATGTCCATTTTCGGCAT
CAAGTTTGGCAAGCTGCACACGCGCCGCTGA
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protein sequence of Gvermi6683.t1

>Gvermi6683.t1 ID=Gvermi6683.t1|Name=Gvermi6683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=127bp
LRADRAQPHVATSRPAPTSPFCLPPLNTDPDEAQLQLIRNGDFSQLRKLR
KMGERRKRTVRFMASVCHDADSLERIALTPKGEQRPPESPPAPAQQQSAE
KSQHKPDKDGRMSIFGIKFGKLHTRR*
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mRNA from alignment at ScGOVlb_88:1927518..1930205+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6683.t1 ID=Gvermi6683.t1|Name=Gvermi6683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2688bp|location=Sequence derived from alignment at ScGOVlb_88:1927518..1930205+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ttgcgcgccgatcgcgctcagcgtaagttgcgtgcatccgagcgttccac
tttggcggtcgcgcgcCCTTCCGCATGATGAGCAATTCACGCCGAAACAC
ACATCCTAGTGATCAGCATCATCTCGACGCTGCAACAAGCAGCGACACCT
GACACTCTGCGGACCGATATGATAGGCCTGACGGAACGTGTGACGCGCCC
GCCGCTCTCAGTTCATTGCTGACCTCTTGTGCTTGTTGTTGCCGCGTGCC
TCACGCTTCTCCCCGCCCCGCACACAGGTACGTCATGCCACCCACGCCCA
GCCCACCGCGTGTTCCGGAGGATGACCCCATAGTTTTACTATTAGATGAC
GAGCTTTAGTGCGCACTGAGACTCAGTTTTTGTAGTCGCTGCGCGTGAAG
ATGAAAGCTAATGTCTTTGACGGCCACCGATCGCCCCCCCTGCCCTCGTC
CGTGCCACAGCCCCCACTGACCGCGCGTCGTTTGTGTTCACCACCCGAAA
GCGCATGTCGCCACATCGCGCCCCGCACCCACCTCGGTAAGTGCCATCAT
GCTGCTGTGCGGCCCCCCTCCTGCGCCGCGCCGCCGCACCTCTTGCGAAG
CGCACTGTGATGATCACTCGGCATTTGTCTCAAGGTTGTGCTCTCGCGGT
TTTCGCGTTTGCCTCGTCTATGTGGAAACTCTCGGACTACCTTCAAACGA
GCATCTCTGACTCACCACGCACCCCATGGCCGCTCGCACCCCGCCGCCTT
TGCGCGCTTGCCATCTTCTGACCCACCCACCGCATACAGCCTTTTTGTGT
ATGCGCCCGCTTGCGCCCACAACGCCTCGTCTGCGCCCgcgctgcgcagc
gcagcgccgcccatggcgcagcgcCACCCGCAACAAACTTTCGCGCAGCG
CCGATGCAGTCGTAAACAAAAGTGCCCTTTATCACAAACACAATGCCGCA
GCGAGAGACGACGCATCACACATCAGAAGATGGCGTCTTTTTCGGGCGAG
AGCTGCTCCGGCAGCGGCTGATGCTGCCCGCCGCCCGCGCCGTTCGCCGC
CCCGTCGCTCGCCGCGTCGTCGCCCTGCGCGCCGAGCGCCGCCGCGCGCC
CCACGGCCGCGTCCACGTCGGCGCCCAGCTGCGCCACGTCCGCCGGCACG
TGCGCCAGCGCCGCCCTCAGCGCCGCCGCCGAGCGCAGCAGCGCGCGTAG
CGCGCCGCGCGACTGCGCGCACGCCGCCGCCGCCTCGCGCTGCTGCGCCT
CCAGCCGCGCCGAGAACTGCGCCTTCTTGGCCAGGCTGCGCATCGCGCTC
TCGCGGTTCTTGAGCACGCGCTGCCGCTTGCGCTCCTCGGCCGACAGCTc
gccgccgccgccgccgccgttcccgccgccgccgctcccgccgccgccgc
cgccgccgctgccgccgccgccCTTCTTGCCCGCGCGCCGCCGCTTGCTC
GGCCGCCCCGCCTCCgcgccggcgcccgcgtccgcgccggcgccggcgcc
ggcgccggcgcccgcgcAcgcgccgctgtccgcgtcgtcgccggagggcg
acatggcggcgctcgggcgcgcgcggcgtcgcgcggcgcgtgcctcgcgg
ccgttttggcgcgccgcgcgcgccgccagcggctcgcggcgcccgctact
ggccaattgcgcgccaccacggagcgcgccgcggcgcgcggtgagccaaa
gccgcttcgccgccaggcgcgcgcgcgctcttccccgcgctcggcgcgcg
gtgcattctcaccccggcagcgtgcgcacctccgccgcgcgcgcgggcgc
gcgcgcccggggagcacttgtgcggccggctccgcatccgccgcgcgctg
cgcgcgagcgaccgcgcgctgcggccggcgcaggcgggcaccagcgccgc
gtgcgctgcggccgccgcgcacgaggccgccctccgccgcgccactcggc
ctgtggtgctgcggcgcagccgtgcgcgcgcgcgcgccgccgcggcgcgc
cgctccgcgcctgagcgggcgtccattcgccccgagcagccgcgccgcgc
cccaattcacgcgccagtccgccgcgcgcaagcgggcgccggccgccccc
gcgcgcttccccatcgggaagcgccgccgcagcgttcaaatcagccgccg
ccgccgccgcgcgcgccgcataagagcgccggccgccgccgcgcacccgc
cgcgcgccgcgccgcgccgcgccgcaacgccgcgcactgcaccgccgttc
gagccgccagcccgcaccgccccagcgcccgcccgccgcatggacttcat
cggcagctactacgtgccggcctcggacccgttcccgacgccgcgcaacg
ccgtgccgcccgtgttccacgagctgccgccgcTCAACACCGACCCGGAC
GAGGCGCAGCTGCAGTTGATCAGGAACGGCGACTTCTCGCAGCTGCGAAA
GCTGCGCAAGATGGGCGAGCGCCGCAAGCGCACCGTCCGCTTCATGGCGT
CCGTCTGTCACGACGCCGACTCGCTCGAGCGCATTGCCCTCACCCCGAAG
GGCGAGCAGCGCCCCCCCGAATCGCCGCCCGCCCCCGCGCAGCAGCAGAG
CGCCGAGAAGAGCCAGCACAAGCCAGACAAGGACGGCCGCATGTCCATTT
TCGGCATCAAGTTTGGCAAGCTGCACACGCGCCGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1927518..1930205+

>Gvermi6683.t1 ID=Gvermi6683.t1|Name=Gvermi6683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=381bp|location=Sequence derived from alignment at ScGOVlb_88:1927518..1930205+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ttgcgcgccgatcgcgctcagcCGCATGTCGCCACATCGCGCCCCGCACC
CACCTCGCCTTTTTGTctgccgccgcTCAACACCGACCCGGACGAGGCGC
AGCTGCAGTTGATCAGGAACGGCGACTTCTCGCAGCTGCGAAAGCTGCGC
AAGATGGGCGAGCGCCGCAAGCGCACCGTCCGCTTCATGGCGTCCGTCTG
TCACGACGCCGACTCGCTCGAGCGCATTGCCCTCACCCCGAAGGGCGAGC
AGCGCCCCCCCGAATCGCCGCCCGCCCCCGCGCAGCAGCAGAGCGCCGAG
AAGAGCCAGCACAAGCCAGACAAGGACGGCCGCATGTCCATTTTCGGCAT
CAAGTTTGGCAAGCTGCACACGCGCCGCTGA
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