Gvermi6670.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6670.t1
Unique Name	Gvermi6670.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1896265..1897269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707718.1
Preferred name	PDHB1
PFAMs	Transket_pyr,Transketolase_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG ko	ko:K00162
KEGG Reaction	R00014,R00209,R01699,R03270
KEGG Pathway	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG Module	M00307
Evalue	1.5e-164
EggNOG OGs	COG0022@1\|root,KOG0524@2759\|Eukaryota
EC	1.2.4.1
Description	pyruvate dehydrogenase (acetyl-transferring) activity
COG category	C
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6670	Gvermi6670	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1896265..1897269 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6670.t1.start1	Gvermi6670.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1896265..1896267 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6670.t1.CDS1	Gvermi6670.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1896265..1897269 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6670.t1.exon1	Gvermi6670.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1896265..1897269 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6670.t1.stop1	Gvermi6670.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1897267..1897269 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6670.t1	Gvermi6670.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1896265..1897269 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1896265..1897269+
coding sequence from alignment at ScGOVlb_88:1896265..1897269+

mRNA sequence

>Gvermi6670.t1 ID=Gvermi6670.t1|Name=Gvermi6670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=335bp
MTCREALNSAIDEELARDDRVFVIGEEVAEYDGAYKVTKGLHAKYGDRRI
VDTPITESGFTGLATGAAMAGLRPICEFMTFNFSMQAIDHIVNSAAKTLY
MSGGQINVPIVFRGPNGASAGVGAQHSQCFASWYGSVPGLKVVSPYDVED
CRGLLKAAVRDPNPVVCLENELMYNVSFDNVPDEVMDPDFVLPIGQAKIL
REGTDITIVGHSKWVGFAVQAAEILQQEGISAEVINLRSIRPLDRNTITE
SVKKTNRLVTVEGGWPTFGIGAEICAAVFESDAFEYLDAPVQRVSGADVP
TPYAENLEAKAFPTVEDITIAARAAMTRMLPEAV*

spliced messenger RNA

>Gvermi6670.t1 ID=Gvermi6670.t1|Name=Gvermi6670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_88:1896265..1897269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTGTCGTGAGGCGCTCAACTCAGCAATTGACGAAGAACTGGCTCG
CGATGATCGGGTGTTCGTTATTGGCGAAGAGGTAGCGGAGTACGACGGCG
CGTACAAGGTCACCAAAGGTCTGCATGCAAAATACGGAGATCGACGTATC
GTTGACACTCCCATTACAGAATCTGGTTTCACTGGCCTTGCTACCGGTGC
TGCCATGGCTGGCTTACGCCCCATCTGTGAGTTTATGACATTCAATTTCT
CAATGCAGGCCATTGATCATATCGTCAACTCTGCGGCGAAGACTTTGTAC
ATGTCTGGAGGCCAGATCAACGTGCCAATCGTGTTTCGTGGGCCGAATGG
AGCTTCCGCGGGAGTTGGCGCACAGCATTCGCAGTGCTTTGCGTCTTGGT
ACGGCTCTGTTCCGGGTCTCAAAGTTGTTTCGCCGTACGACGTCGAGGAC
TGTCGAGGTTTGCTCAAAGCTGCTGTGAGAGATCCTAATCCCGTAGTTTG
TCTCGAAAACGAACTCATGTACAACGTCAGCTTCGATAACGTCCCGGATG
AAGTGATGGATCCGGACTTTGTTCTACCAATCGGGCAGGCAAAAATTTTG
AGAGAGGGTACTGACATCACTATCGTAGGACACAGCAAGTGGGTGGGCTT
TGCCGTGCAAGCCGCTGAAATTTTGCAGCAGGAAGGCATCTCTGCTGAGG
TTATTAATCTACGATCTATTCGCCCTCTTGACCGTAATACTATCACAGAG
TCAGTCAAGAAAACTAACAGATTAGTTACGGTTGAGGGTGGGTGGCCAAC
TTTTGGCATTGGCGCAGAAATTTGTGCTGCGGTTTTCGAATCAGATGCAT
TTGAATATCTCGATGCACCCGTTCAGCGAGTTTCCGGGGCCGATGTTCCA
ACTCCGTACGCGGAGAATCTGGAAGCGAAGGCCTTCCCGACTGTCGAAGA
CATCACCATAGCCGCCCGAGCAGCAATGACAAGAATGCTTCCGGAGGCAG
TGTGA

protein sequence of Gvermi6670.t1

>Gvermi6670.t1 ID=Gvermi6670.t1|Name=Gvermi6670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=335bp
MTCREALNSAIDEELARDDRVFVIGEEVAEYDGAYKVTKGLHAKYGDRRI
VDTPITESGFTGLATGAAMAGLRPICEFMTFNFSMQAIDHIVNSAAKTLY
MSGGQINVPIVFRGPNGASAGVGAQHSQCFASWYGSVPGLKVVSPYDVED
CRGLLKAAVRDPNPVVCLENELMYNVSFDNVPDEVMDPDFVLPIGQAKIL
REGTDITIVGHSKWVGFAVQAAEILQQEGISAEVINLRSIRPLDRNTITE
SVKKTNRLVTVEGGWPTFGIGAEICAAVFESDAFEYLDAPVQRVSGADVP
TPYAENLEAKAFPTVEDITIAARAAMTRMLPEAV*

mRNA from alignment at ScGOVlb_88:1896265..1897269+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6670.t1 ID=Gvermi6670.t1|Name=Gvermi6670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_88:1896265..1897269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTGTCGTGAGGCGCTCAACTCAGCAATTGACGAAGAACTGGCTCG
CGATGATCGGGTGTTCGTTATTGGCGAAGAGGTAGCGGAGTACGACGGCG
CGTACAAGGTCACCAAAGGTCTGCATGCAAAATACGGAGATCGACGTATC
GTTGACACTCCCATTACAGAATCTGGTTTCACTGGCCTTGCTACCGGTGC
TGCCATGGCTGGCTTACGCCCCATCTGTGAGTTTATGACATTCAATTTCT
CAATGCAGGCCATTGATCATATCGTCAACTCTGCGGCGAAGACTTTGTAC
ATGTCTGGAGGCCAGATCAACGTGCCAATCGTGTTTCGTGGGCCGAATGG
AGCTTCCGCGGGAGTTGGCGCACAGCATTCGCAGTGCTTTGCGTCTTGGT
ACGGCTCTGTTCCGGGTCTCAAAGTTGTTTCGCCGTACGACGTCGAGGAC
TGTCGAGGTTTGCTCAAAGCTGCTGTGAGAGATCCTAATCCCGTAGTTTG
TCTCGAAAACGAACTCATGTACAACGTCAGCTTCGATAACGTCCCGGATG
AAGTGATGGATCCGGACTTTGTTCTACCAATCGGGCAGGCAAAAATTTTG
AGAGAGGGTACTGACATCACTATCGTAGGACACAGCAAGTGGGTGGGCTT
TGCCGTGCAAGCCGCTGAAATTTTGCAGCAGGAAGGCATCTCTGCTGAGG
TTATTAATCTACGATCTATTCGCCCTCTTGACCGTAATACTATCACAGAG
TCAGTCAAGAAAACTAACAGATTAGTTACGGTTGAGGGTGGGTGGCCAAC
TTTTGGCATTGGCGCAGAAATTTGTGCTGCGGTTTTCGAATCAGATGCAT
TTGAATATCTCGATGCACCCGTTCAGCGAGTTTCCGGGGCCGATGTTCCA
ACTCCGTACGCGGAGAATCTGGAAGCGAAGGCCTTCCCGACTGTCGAAGA
CATCACCATAGCCGCCCGAGCAGCAATGACAAGAATGCTTCCGGAGGCAG
TGTGA

Coding sequence (CDS) from alignment at ScGOVlb_88:1896265..1897269+

>Gvermi6670.t1 ID=Gvermi6670.t1|Name=Gvermi6670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1005bp|location=Sequence derived from alignment at ScGOVlb_88:1896265..1897269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTGTCGTGAGGCGCTCAACTCAGCAATTGACGAAGAACTGGCTCG
CGATGATCGGGTGTTCGTTATTGGCGAAGAGGTAGCGGAGTACGACGGCG
CGTACAAGGTCACCAAAGGTCTGCATGCAAAATACGGAGATCGACGTATC
GTTGACACTCCCATTACAGAATCTGGTTTCACTGGCCTTGCTACCGGTGC
TGCCATGGCTGGCTTACGCCCCATCTGTGAGTTTATGACATTCAATTTCT
CAATGCAGGCCATTGATCATATCGTCAACTCTGCGGCGAAGACTTTGTAC
ATGTCTGGAGGCCAGATCAACGTGCCAATCGTGTTTCGTGGGCCGAATGG
AGCTTCCGCGGGAGTTGGCGCACAGCATTCGCAGTGCTTTGCGTCTTGGT
ACGGCTCTGTTCCGGGTCTCAAAGTTGTTTCGCCGTACGACGTCGAGGAC
TGTCGAGGTTTGCTCAAAGCTGCTGTGAGAGATCCTAATCCCGTAGTTTG
TCTCGAAAACGAACTCATGTACAACGTCAGCTTCGATAACGTCCCGGATG
AAGTGATGGATCCGGACTTTGTTCTACCAATCGGGCAGGCAAAAATTTTG
AGAGAGGGTACTGACATCACTATCGTAGGACACAGCAAGTGGGTGGGCTT
TGCCGTGCAAGCCGCTGAAATTTTGCAGCAGGAAGGCATCTCTGCTGAGG
TTATTAATCTACGATCTATTCGCCCTCTTGACCGTAATACTATCACAGAG
TCAGTCAAGAAAACTAACAGATTAGTTACGGTTGAGGGTGGGTGGCCAAC
TTTTGGCATTGGCGCAGAAATTTGTGCTGCGGTTTTCGAATCAGATGCAT
TTGAATATCTCGATGCACCCGTTCAGCGAGTTTCCGGGGCCGATGTTCCA
ACTCCGTACGCGGAGAATCTGGAAGCGAAGGCCTTCCCGACTGTCGAAGA
CATCACCATAGCCGCCCGAGCAGCAATGACAAGAATGCTTCCGGAGGCAG
TGTGA