Gvermi6658.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6658.t1
Unique Name	Gvermi6658.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	680

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1852186..1854877 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121948.AUAC01000002_gene948
Max annot lvl	28211\|Alphaproteobacteria
Evalue	2.24e-29
EggNOG OGs	COG0703@1\|root,COG0703@2\|Bacteria,1PXKF@1224\|Proteobacteria,2V7VZ@28211\|Alphaproteobacteria,4405X@69657\|Hyphomonadaceae
Description	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6658	Gvermi6658	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1852186..1854877 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6658.t1	Gvermi6658.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1852186..1854877 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6658.t1.start1	Gvermi6658.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1852186..1852188 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6658.t1.CDS1	Gvermi6658.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1852186..1853034 +
Gvermi6658.t1.CDS2	Gvermi6658.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1853687..1854877 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6658.t1.exon1	Gvermi6658.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1852186..1853034 +
Gvermi6658.t1.exon2	Gvermi6658.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1853687..1854877 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6658.t1.intron1	Gvermi6658.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_88 1853035..1853686 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6658.t1.stop1	Gvermi6658.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1854875..1854877 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1852186..1854877+
coding sequence from alignment at ScGOVlb_88:1852186..1854877+

mRNA sequence

>Gvermi6658.t1 ID=Gvermi6658.t1|Name=Gvermi6658.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=680bp
MYADKIAFLGVPFPAQSVSYKRPNGLKRLQTVKISLLPSRKVAHFHNINV
GAGCKITSSVYCSASGWDALTSDSFNEKLESNELRLCLVGMSNCGKSHWS
SQLCRLKRFHLICVDDQIEEEISPELAKLGYSGIDGMAKWMGFPSDEQFT
ANQDRYLMHEERITSRAVPDSNRNTVLDTTGSVVYLSDGTLGQLRADYLV
IHLEANDDMLEMMTENYFKTPKPVVWGDAFNSRELETPMESMRRCYPSLL
RKRRERYAKLAHITVPAAVSLSRETKLEDFLEYGLGQNGQENSMRFVDTR
LALGCFSARLFRDFASPRYVRHVLVIQQCQLMCAPSASAIFPRIPPCRRC
PIKIDVMATNDAEDTELQEALQRSREQTNLEEAMLAEALAASMSTRDEEI
ARSMQREQLLLLEKSLCANTDTPEVSNRQLHLTPLSVQDQIVANGSAEAS
HVSPSCSEPSSHGWQCAGSSKQFYARHHAPSASKATHPLPADKNSASAKQ
TIAEIEKERLDERSSVPVVVIDGQNVGCSYGGGKHNFRAKGVQVVLDYYL
SRGMKAVAMLPACKVDTRFGLLNDRVADDPALLKNLSAQGLVSFTPSGSH
DDHFLLAYAKQKNIDIISNDRFQKEVSEQATKGASRTLQDFLNEHLIPYT
FVNGEFLPNPNPHQLSRADHCSRSPRYRR*

spliced messenger RNA

>Gvermi6658.t1 ID=Gvermi6658.t1|Name=Gvermi6658.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2040bp|location=Sequence derived from alignment at ScGOVlb_88:1852186..1854877+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCGGACAAGATTGCCTTTCTAGGCGTGCCATTTCCAGCACAGTC
CGTGTCGTATAAGAGACCCAATGGTTTGAAACGGCTGCAGACCGTTAAGA
TTTCACTGCTTCCTTCTCGGAAAGTAGCTCATTTCCACAACATAAATGTT
GGGGCCGGGTGCAAGATAACATCATCTGTCTATTGCAGTGCCTCAGGGTG
GGACGCTCTTACTTCAGATTCCTTCAACGAAAAGCTAGAATCAAACGAGC
TTCGATTATGTTTGGTGGGTATGTCGAATTGCGGCAAATCGCACTGGTCC
TCGCAGCTGTGTCGCCTCAAGAGGTTTCACCTAATCTGCGTCGACGATCA
AATTGAAGAGGAAATCAGTCCTGAATTGGCAAAACTTGGATACTCTGGCA
TTGACGGCATGGCAAAATGGATGGGATTCCCGAGTGACGAGCAGTTCACG
GCAAATCAAGACCGCTACCTTATGCACGAAGAGCGTATAACATCCCGTGC
GGTACCAGACTCCAATAGAAATACTGTTTTGGACACTACCGGGAGCGTCG
TTTACCTTTCTGATGGGACTTTGGGTCAACTGCGAGCGGATTACCTTGTG
ATACATCTCGAAGCGAATGACGATATGCTTGAGATGATGACAGAAAACTA
CTTCAAAACGCCGAAACCTGTTGTGTGGGGGGATGCATTTAATAGTCGCG
AACTCGAAACGCCAATGGAGTCCATGAGGCGGTGCTATCCGAGTTTGTTG
AGGAAACGAAGGGAACGATATGCTAAACTTGCTCACATTACTGTACCAGC
CGCAGTTTCACTTTCCAGAGAAACCAAATTGGAAGATTTCCTAGAATATG
GGCTGGGCCAAAATGGTCAGGAAAACAGTATGCGCTTTGTTGACACGCGG
CTAGCACTTGGCTGTTTCAGTGCTCGCCTGTTCCGAGATTTTGCTTCGCC
GCGCTACGTGCGACATGTTCTAGTTATCCAGCAGTGCCAGCTCATGTGCG
CACCTTCAGCTTCAGCTATCTTCCCTAGAATCCCTCCTTGCCGGCGTTGC
CCAATTAAAATTGATGTGATGGCCACTAACGATGCAGAAGACACCGAGCT
GCAGGAGGCCTTGCAACGCAGTCGTGAACAAACAAACTTGGAAGAAGCAA
TGCTTGCAGAAGCTTTAGCAGCGAGTATGAGCACCCGTGACGAGGAAATT
GCGCGCTCCATGCAAAGAGAACAACTTCTTCTACTTGAGAAGAGCCTTTG
TGCGAACACAGATACGCCTGAGGTCTCTAACAGGCAGCTGCACTTGACGC
CGCTGTCCGTACAGGACCAAATTGTCGCAAATGGTTCCGCGGAAGCTTCG
CACGTTTCTCCGTCCTGTTCCGAACCATCATCTCACGGATGGCAGTGTGC
GGGGTCCTCGAAGCAGTTCTATGCGCGCCATCATGCTCCTTCGGCTTCCA
AAGCTACCCATCCTCTTCCGGCTGATAAAAACTCCGCTTCAGCAAAGCAA
ACAATCGCTGAAATTGAAAAAGAGCGCCTAGATGAACGCTCATCGGTGCC
AGTTGTGGTTATTGATGGACAGAACGTCGGATGCTCGTATGGAGGGGGTA
AGCACAACTTCCGTGCCAAGGGCGTGCAAGTAGTGCTCGATTACTATTTA
AGCAGAGGAATGAAAGCGGTTGCAATGTTACCTGCGTGTAAAGTTGATAC
TCGATTCGGTTTGCTCAACGACCGCGTTGCAGACGATCCTGCCCTTTTGA
AAAATCTTTCCGCTCAGGGTCTCGTGTCGTTTACTCCGTCTGGTTCACAT
GATGATCACTTCCTTCTGGCTTATGCGAAGCAAAAGAACATTGATATCAT
TTCTAATGATCGATTTCAGAAAGAAGTTTCTGAGCAAGCAACAAAGGGTG
CATCCCGTACCTTGCAGGACTTTCTGAACGAACATCTCATACCATACACA
TTTGTGAATGGAGAGTTTCTGCCAAACCCGAACCCGCATCAACTCAGCCG
TGCCGACCATTGCAGTCGGAGTCCGCGCTACAGGCGATAA

protein sequence of Gvermi6658.t1

>Gvermi6658.t1 ID=Gvermi6658.t1|Name=Gvermi6658.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=680bp
MYADKIAFLGVPFPAQSVSYKRPNGLKRLQTVKISLLPSRKVAHFHNINV
GAGCKITSSVYCSASGWDALTSDSFNEKLESNELRLCLVGMSNCGKSHWS
SQLCRLKRFHLICVDDQIEEEISPELAKLGYSGIDGMAKWMGFPSDEQFT
ANQDRYLMHEERITSRAVPDSNRNTVLDTTGSVVYLSDGTLGQLRADYLV
IHLEANDDMLEMMTENYFKTPKPVVWGDAFNSRELETPMESMRRCYPSLL
RKRRERYAKLAHITVPAAVSLSRETKLEDFLEYGLGQNGQENSMRFVDTR
LALGCFSARLFRDFASPRYVRHVLVIQQCQLMCAPSASAIFPRIPPCRRC
PIKIDVMATNDAEDTELQEALQRSREQTNLEEAMLAEALAASMSTRDEEI
ARSMQREQLLLLEKSLCANTDTPEVSNRQLHLTPLSVQDQIVANGSAEAS
HVSPSCSEPSSHGWQCAGSSKQFYARHHAPSASKATHPLPADKNSASAKQ
TIAEIEKERLDERSSVPVVVIDGQNVGCSYGGGKHNFRAKGVQVVLDYYL
SRGMKAVAMLPACKVDTRFGLLNDRVADDPALLKNLSAQGLVSFTPSGSH
DDHFLLAYAKQKNIDIISNDRFQKEVSEQATKGASRTLQDFLNEHLIPYT
FVNGEFLPNPNPHQLSRADHCSRSPRYRR*

mRNA from alignment at ScGOVlb_88:1852186..1854877+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6658.t1 ID=Gvermi6658.t1|Name=Gvermi6658.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2692bp|location=Sequence derived from alignment at ScGOVlb_88:1852186..1854877+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCGGACAAGATTGCCTTTCTAGGCGTGCCATTTCCAGCACAGTC
CGTGTCGTATAAGAGACCCAATGGTTTGAAACGGCTGCAGACCGTTAAGA
TTTCACTGCTTCCTTCTCGGAAAGTAGCTCATTTCCACAACATAAATGTT
GGGGCCGGGTGCAAGATAACATCATCTGTCTATTGCAGTGCCTCAGGGTG
GGACGCTCTTACTTCAGATTCCTTCAACGAAAAGCTAGAATCAAACGAGC
TTCGATTATGTTTGGTGGGTATGTCGAATTGCGGCAAATCGCACTGGTCC
TCGCAGCTGTGTCGCCTCAAGAGGTTTCACCTAATCTGCGTCGACGATCA
AATTGAAGAGGAAATCAGTCCTGAATTGGCAAAACTTGGATACTCTGGCA
TTGACGGCATGGCAAAATGGATGGGATTCCCGAGTGACGAGCAGTTCACG
GCAAATCAAGACCGCTACCTTATGCACGAAGAGCGTATAACATCCCGTGC
GGTACCAGACTCCAATAGAAATACTGTTTTGGACACTACCGGGAGCGTCG
TTTACCTTTCTGATGGGACTTTGGGTCAACTGCGAGCGGATTACCTTGTG
ATACATCTCGAAGCGAATGACGATATGCTTGAGATGATGACAGAAAACTA
CTTCAAAACGCCGAAACCTGTTGTGTGGGGGGATGCATTTAATAGTCGCG
AACTCGAAACGCCAATGGAGTCCATGAGGCGGTGCTATCCGAGTTTGTTG
AGGAAACGAAGGGAACGATATGCTAAACTTGCTCACATTACTGTACCAGC
CGCAGTTTCACTTTCCAGAGAAACCAAATTGGAAGATTTCCTAGAATATG
TACGTCGACAACTTTGATGACGTGCAGAGAGTTATTATACGGATTGAAAA
TGTTCGTAAGAGCTGAGGTGTTGATAAAGCTCAGTATTCACTTCACGAGT
ACAATGGTATTCCCAGAAGAAGAACTTAAAAACAACCCCATGTATCGATA
TAGAGAAGCACTGAAGTACATGATGTGAACCTGGGACGGATGCTGGTGGG
ATCTGCTTTTAGATTTGGTTCATTATATTCTGCTAGGTGGCCTTGAACTC
GTGGGCTTTGTTTTTTCCATAGTGCCGCTCTCACCAGTTGAGAAGAAGAC
CAGAAAAAAAAGATACATAACAGCTCATAAATACCTTTCTCAGTTTTTTA
TGATTTGCTAAAGACTCCCCCGTCACTCATGCGATTGATACTTATGATGG
AGACGTACTGTTGAGGGGTGGAAACTCAATGTCTGGACCACGCAGACGCG
CAGCTGGGCAGGCGAAGTGGTTCGTTACTTCTTTTACGCAAAATGGAAAT
GTAGTTCTTCCCGTGCGGGGTTTGAACCCGCGATCTTCCCGGTGAAAGCG
GGACATCCTAACCACTAGACCAACGGGAACGAACGACCTCGGTGCTCTTT
CACGTGATTCAATACGTTTTTATTGAATAAAATTTTATGCTTCGAAATTA
GGGGCTGGGCCAAAATGGTCAGGAAAACAGTATGCGCTTTGTTGACACGC
GGCTAGCACTTGGCTGTTTCAGTGCTCGCCTGTTCCGAGATTTTGCTTCG
CCGCGCTACGTGCGACATGTTCTAGTTATCCAGCAGTGCCAGCTCATGTG
CGCACCTTCAGCTTCAGCTATCTTCCCTAGAATCCCTCCTTGCCGGCGTT
GCCCAATTAAAATTGATGTGATGGCCACTAACGATGCAGAAGACACCGAG
CTGCAGGAGGCCTTGCAACGCAGTCGTGAACAAACAAACTTGGAAGAAGC
AATGCTTGCAGAAGCTTTAGCAGCGAGTATGAGCACCCGTGACGAGGAAA
TTGCGCGCTCCATGCAAAGAGAACAACTTCTTCTACTTGAGAAGAGCCTT
TGTGCGAACACAGATACGCCTGAGGTCTCTAACAGGCAGCTGCACTTGAC
GCCGCTGTCCGTACAGGACCAAATTGTCGCAAATGGTTCCGCGGAAGCTT
CGCACGTTTCTCCGTCCTGTTCCGAACCATCATCTCACGGATGGCAGTGT
GCGGGGTCCTCGAAGCAGTTCTATGCGCGCCATCATGCTCCTTCGGCTTC
CAAAGCTACCCATCCTCTTCCGGCTGATAAAAACTCCGCTTCAGCAAAGC
AAACAATCGCTGAAATTGAAAAAGAGCGCCTAGATGAACGCTCATCGGTG
CCAGTTGTGGTTATTGATGGACAGAACGTCGGATGCTCGTATGGAGGGGG
TAAGCACAACTTCCGTGCCAAGGGCGTGCAAGTAGTGCTCGATTACTATT
TAAGCAGAGGAATGAAAGCGGTTGCAATGTTACCTGCGTGTAAAGTTGAT
ACTCGATTCGGTTTGCTCAACGACCGCGTTGCAGACGATCCTGCCCTTTT
GAAAAATCTTTCCGCTCAGGGTCTCGTGTCGTTTACTCCGTCTGGTTCAC
ATGATGATCACTTCCTTCTGGCTTATGCGAAGCAAAAGAACATTGATATC
ATTTCTAATGATCGATTTCAGAAAGAAGTTTCTGAGCAAGCAACAAAGGG
TGCATCCCGTACCTTGCAGGACTTTCTGAACGAACATCTCATACCATACA
CATTTGTGAATGGAGAGTTTCTGCCAAACCCGAACCCGCATCAACTCAGC
CGTGCCGACCATTGCAGTCGGAGTCCGCGCTACAGGCGATAA

Coding sequence (CDS) from alignment at ScGOVlb_88:1852186..1854877+

>Gvermi6658.t1 ID=Gvermi6658.t1|Name=Gvermi6658.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2040bp|location=Sequence derived from alignment at ScGOVlb_88:1852186..1854877+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCGGACAAGATTGCCTTTCTAGGCGTGCCATTTCCAGCACAGTC
CGTGTCGTATAAGAGACCCAATGGTTTGAAACGGCTGCAGACCGTTAAGA
TTTCACTGCTTCCTTCTCGGAAAGTAGCTCATTTCCACAACATAAATGTT
GGGGCCGGGTGCAAGATAACATCATCTGTCTATTGCAGTGCCTCAGGGTG
GGACGCTCTTACTTCAGATTCCTTCAACGAAAAGCTAGAATCAAACGAGC
TTCGATTATGTTTGGTGGGTATGTCGAATTGCGGCAAATCGCACTGGTCC
TCGCAGCTGTGTCGCCTCAAGAGGTTTCACCTAATCTGCGTCGACGATCA
AATTGAAGAGGAAATCAGTCCTGAATTGGCAAAACTTGGATACTCTGGCA
TTGACGGCATGGCAAAATGGATGGGATTCCCGAGTGACGAGCAGTTCACG
GCAAATCAAGACCGCTACCTTATGCACGAAGAGCGTATAACATCCCGTGC
GGTACCAGACTCCAATAGAAATACTGTTTTGGACACTACCGGGAGCGTCG
TTTACCTTTCTGATGGGACTTTGGGTCAACTGCGAGCGGATTACCTTGTG
ATACATCTCGAAGCGAATGACGATATGCTTGAGATGATGACAGAAAACTA
CTTCAAAACGCCGAAACCTGTTGTGTGGGGGGATGCATTTAATAGTCGCG
AACTCGAAACGCCAATGGAGTCCATGAGGCGGTGCTATCCGAGTTTGTTG
AGGAAACGAAGGGAACGATATGCTAAACTTGCTCACATTACTGTACCAGC
CGCAGTTTCACTTTCCAGAGAAACCAAATTGGAAGATTTCCTAGAATATG
GGCTGGGCCAAAATGGTCAGGAAAACAGTATGCGCTTTGTTGACACGCGG
CTAGCACTTGGCTGTTTCAGTGCTCGCCTGTTCCGAGATTTTGCTTCGCC
GCGCTACGTGCGACATGTTCTAGTTATCCAGCAGTGCCAGCTCATGTGCG
CACCTTCAGCTTCAGCTATCTTCCCTAGAATCCCTCCTTGCCGGCGTTGC
CCAATTAAAATTGATGTGATGGCCACTAACGATGCAGAAGACACCGAGCT
GCAGGAGGCCTTGCAACGCAGTCGTGAACAAACAAACTTGGAAGAAGCAA
TGCTTGCAGAAGCTTTAGCAGCGAGTATGAGCACCCGTGACGAGGAAATT
GCGCGCTCCATGCAAAGAGAACAACTTCTTCTACTTGAGAAGAGCCTTTG
TGCGAACACAGATACGCCTGAGGTCTCTAACAGGCAGCTGCACTTGACGC
CGCTGTCCGTACAGGACCAAATTGTCGCAAATGGTTCCGCGGAAGCTTCG
CACGTTTCTCCGTCCTGTTCCGAACCATCATCTCACGGATGGCAGTGTGC
GGGGTCCTCGAAGCAGTTCTATGCGCGCCATCATGCTCCTTCGGCTTCCA
AAGCTACCCATCCTCTTCCGGCTGATAAAAACTCCGCTTCAGCAAAGCAA
ACAATCGCTGAAATTGAAAAAGAGCGCCTAGATGAACGCTCATCGGTGCC
AGTTGTGGTTATTGATGGACAGAACGTCGGATGCTCGTATGGAGGGGGTA
AGCACAACTTCCGTGCCAAGGGCGTGCAAGTAGTGCTCGATTACTATTTA
AGCAGAGGAATGAAAGCGGTTGCAATGTTACCTGCGTGTAAAGTTGATAC
TCGATTCGGTTTGCTCAACGACCGCGTTGCAGACGATCCTGCCCTTTTGA
AAAATCTTTCCGCTCAGGGTCTCGTGTCGTTTACTCCGTCTGGTTCACAT
GATGATCACTTCCTTCTGGCTTATGCGAAGCAAAAGAACATTGATATCAT
TTCTAATGATCGATTTCAGAAAGAAGTTTCTGAGCAAGCAACAAAGGGTG
CATCCCGTACCTTGCAGGACTTTCTGAACGAACATCTCATACCATACACA
TTTGTGAATGGAGAGTTTCTGCCAAACCCGAACCCGCATCAACTCAGCCG
TGCCGACCATTGCAGTCGGAGTCCGCGCTACAGGCGATAA