Gvermi6654.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6654.t1
Unique Name	Gvermi6654.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1839034..1840566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN20158
PFAMs	RIO1,Rio2_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07179
KEGG Pathway	ko03008,map03008
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Evalue	8.34e-101
EggNOG OGs	COG0478@1\|root,KOG2268@2759\|Eukaryota,37MZW@33090\|Viridiplantae,3GD34@35493\|Streptophyta
EC	2.7.11.1
Description	serine threonine-protein kinase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6654	Gvermi6654	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1839034..1840566 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6654.t1.start1	Gvermi6654.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1839034..1839036 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6654.t1.CDS1	Gvermi6654.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1839034..1840566 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6654.t1.exon1	Gvermi6654.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1839034..1840566 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6654.t1.stop1	Gvermi6654.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1840564..1840566 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6654.t1	Gvermi6654.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1839034..1840566 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1839034..1840566+
coding sequence from alignment at ScGOVlb_88:1839034..1840566+

mRNA sequence

>Gvermi6654.t1 ID=Gvermi6654.t1|Name=Gvermi6654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp
MKLDPAALRYLADDHFRVLTAVEMGMRNHDVVPVALISTISALKHGGCAR
ALKLVHKHKLVHRDTKPYVGYRLTTLGYDYLALNALVKRGVLHAVGRPLG
VGKEADVFVVSAADQLIDRHPELADTPHLAMKLHRLGRTSFRAVNAKRDY
LAHRKSASWIYLSRLAAVNEFAFMCALHARHFPVPRPLGHSRHVVVMELC
PGTLLNHVHHLPHPARVANNLIHVAVRLAEHGLVHCDLNEFNVIVDDDAA
PTVIDFPQMVSTRHPDAPRLFARDVAAIRRYFQHKFGVAPHLMLNPSLHT
VARHPSPHHHLDVALSATGFNNLARPALGPAPDAPDQRAHHLLLADHLDS
LHISPPPQPQPHPEPVAHVHADMHPQPGPPRTASQHHTQQHHEQQAQVHV
HNHVDAHADVDAHADVDAHADVDAHADVDAHADVDAHADVDAHADVDVHA
DVDPSDRVRPGVPINKSLIEMRVRKQRSNQSTRRQMAKRNIVKDSQKRKL
KSELQCAVWR*

spliced messenger RNA

>Gvermi6654.t1 ID=Gvermi6654.t1|Name=Gvermi6654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_88:1839034..1840566+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCGACCCCGCCGCGCTGCGCTACCTCGCCGACGACCACTTCCG
CGTGCTCACCGCCGTCGAAATGGGCATGCGCAACCACGACGTCGTCCCCG
TCGCCCTCATCTCCACCATCTCCGCCCTCAAGCACGGCGGCTGCGCCCGC
GCCCTCAAGCTCGTGCACAAGCACAAGCTCGTGCACCGCGACACCAAGCC
CTACGTCGGCTACCGCCTCACCACGCTGGGCTACGACTACCTCGCCCTCA
ACGCCCTCGTCAAGCGCGGCGTGCTGCACGCCGTGGGCCGCCCGCTGGGC
GTCGGCAAGGAGGCCGACGTCTTCGTCGTGTCCGCCGCCGACCAGCTCAT
CGACCGCCACCCGGAGCTCGCCGACACCCCGCACCTCGCCATGAAGCTGC
ACCGCCTGGGCCGCACCTCCTTCCGCGCCGTCAACGCCAAGCGCGACTAC
CTCGCCCACCGCAAGTCCGCCAGCTGGATCTACCTCTCGCGCCTGGCCGC
CGTCAACGAGTTTGCCTTCATGTGCGCCCTGCACGCCCGCCACTTCCCGG
TCCCGCGCCCGCTGGGCCACTCGCGCCACGTCGTCGTCATGGAGCTGTGC
CCGGGCACCCTGCTCAACCACGTGCACCACCTGCCGCACCCAGCCCGCGT
CGCCAACAACCTCATCCACGTCGCCGTCCGCCTCGCCGAGCACGGCCTCG
TCCACTGCGACCTCAACGAGTTCAACGTCATCGTCGACGACGACGCCGCC
CCCACCGTCATCGACTTTCCGCAGATGGTCTCCACGCGCCACCCGGACGC
CCCCCGCCTCTTCGCGCGCGACGTCGCAGCCATCCGCCGCTACTTCCAGC
ACAAGTTTGGCGTCGCCCCGCACCTCATGCTCAACCCCTCGCTGCACACC
GTCGCGCGCCACCCGTCGCCCCACCACCACCTGGACGTCGCCCTGTCTGC
CACCGGATTCAACAACCTTGCGCGCCCTGCTCTTGGCCCCGCCCCTGATG
CGCCCGACCAGCGTGCGCACCACCTCCTCCTAGCCGATCACCTTGACAGT
TTGCACATCTCACCCCCTCCCCAACCCCAGCCCCACCCGGAGCCCGTCGC
CCATGTGCATGCCGACATGCACCCTCAACCAGGCCCCCCCCGTACGGCTT
CCCAACATCACACTCAACAGCACCACGAGCAGCAAGCCCAAgtccacgtc
cataaccacgtcgacgcccatgccgacgtcgacgcccatgccgacgtcga
cgcccatgccgacgtcgacgcccatgccgacgtcgacgcccatgccgacg
tcgacgcccatgccgacgtcgacgcccatgccgacgtcgacgtccatgcc
gatgtcgacccatccgatcgcgtgcgccCTGGTGTCCCCATTAACAAGTC
TCTCATCGAAATGCGCGTGCGAAAGCAGCGGTCAAACCAATCAACAAGGC
GTCAGATGGCCAAGAGAAACATCGTCAAAGACTCGCAAAAACGAAAACTC
AAGTCTGAGCTCCAGTGTGCAGTATGGCGTTAG

protein sequence of Gvermi6654.t1

>Gvermi6654.t1 ID=Gvermi6654.t1|Name=Gvermi6654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MKLDPAALRYLADDHFRVLTAVEMGMRNHDVVPVALISTISALKHGGCAR
ALKLVHKHKLVHRDTKPYVGYRLTTLGYDYLALNALVKRGVLHAVGRPLG
VGKEADVFVVSAADQLIDRHPELADTPHLAMKLHRLGRTSFRAVNAKRDY
LAHRKSASWIYLSRLAAVNEFAFMCALHARHFPVPRPLGHSRHVVVMELC
PGTLLNHVHHLPHPARVANNLIHVAVRLAEHGLVHCDLNEFNVIVDDDAA
PTVIDFPQMVSTRHPDAPRLFARDVAAIRRYFQHKFGVAPHLMLNPSLHT
VARHPSPHHHLDVALSATGFNNLARPALGPAPDAPDQRAHHLLLADHLDS
LHISPPPQPQPHPEPVAHVHADMHPQPGPPRTASQHHTQQHHEQQAQVHV
HNHVDAHADVDAHADVDAHADVDAHADVDAHADVDAHADVDAHADVDVHA
DVDPSDRVRPGVPINKSLIEMRVRKQRSNQSTRRQMAKRNIVKDSQKRKL
KSELQCAVWR*

mRNA from alignment at ScGOVlb_88:1839034..1840566+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6654.t1 ID=Gvermi6654.t1|Name=Gvermi6654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_88:1839034..1840566+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTCGACCCCGCCGCGCTGCGCTACCTCGCCGACGACCACTTCCG
CGTGCTCACCGCCGTCGAAATGGGCATGCGCAACCACGACGTCGTCCCCG
TCGCCCTCATCTCCACCATCTCCGCCCTCAAGCACGGCGGCTGCGCCCGC
GCCCTCAAGCTCGTGCACAAGCACAAGCTCGTGCACCGCGACACCAAGCC
CTACGTCGGCTACCGCCTCACCACGCTGGGCTACGACTACCTCGCCCTCA
ACGCCCTCGTCAAGCGCGGCGTGCTGCACGCCGTGGGCCGCCCGCTGGGC
GTCGGCAAGGAGGCCGACGTCTTCGTCGTGTCCGCCGCCGACCAGCTCAT
CGACCGCCACCCGGAGCTCGCCGACACCCCGCACCTCGCCATGAAGCTGC
ACCGCCTGGGCCGCACCTCCTTCCGCGCCGTCAACGCCAAGCGCGACTAC
CTCGCCCACCGCAAGTCCGCCAGCTGGATCTACCTCTCGCGCCTGGCCGC
CGTCAACGAGTTTGCCTTCATGTGCGCCCTGCACGCCCGCCACTTCCCGG
TCCCGCGCCCGCTGGGCCACTCGCGCCACGTCGTCGTCATGGAGCTGTGC
CCGGGCACCCTGCTCAACCACGTGCACCACCTGCCGCACCCAGCCCGCGT
CGCCAACAACCTCATCCACGTCGCCGTCCGCCTCGCCGAGCACGGCCTCG
TCCACTGCGACCTCAACGAGTTCAACGTCATCGTCGACGACGACGCCGCC
CCCACCGTCATCGACTTTCCGCAGATGGTCTCCACGCGCCACCCGGACGC
CCCCCGCCTCTTCGCGCGCGACGTCGCAGCCATCCGCCGCTACTTCCAGC
ACAAGTTTGGCGTCGCCCCGCACCTCATGCTCAACCCCTCGCTGCACACC
GTCGCGCGCCACCCGTCGCCCCACCACCACCTGGACGTCGCCCTGTCTGC
CACCGGATTCAACAACCTTGCGCGCCCTGCTCTTGGCCCCGCCCCTGATG
CGCCCGACCAGCGTGCGCACCACCTCCTCCTAGCCGATCACCTTGACAGT
TTGCACATCTCACCCCCTCCCCAACCCCAGCCCCACCCGGAGCCCGTCGC
CCATGTGCATGCCGACATGCACCCTCAACCAGGCCCCCCCCGTACGGCTT
CCCAACATCACACTCAACAGCACCACGAGCAGCAAGCCCAAgtccacgtc
cataaccacgtcgacgcccatgccgacgtcgacgcccatgccgacgtcga
cgcccatgccgacgtcgacgcccatgccgacgtcgacgcccatgccgacg
tcgacgcccatgccgacgtcgacgcccatgccgacgtcgacgtccatgcc
gatgtcgacccatccgatcgcgtgcgccCTGGTGTCCCCATTAACAAGTC
TCTCATCGAAATGCGCGTGCGAAAGCAGCGGTCAAACCAATCAACAAGGC
GTCAGATGGCCAAGAGAAACATCGTCAAAGACTCGCAAAAACGAAAACTC
AAGTCTGAGCTCCAGTGTGCAGTATGGCGTTAG

Coding sequence (CDS) from alignment at ScGOVlb_88:1839034..1840566+

>Gvermi6654.t1 ID=Gvermi6654.t1|Name=Gvermi6654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1533bp|location=Sequence derived from alignment at ScGOVlb_88:1839034..1840566+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTCGACCCCGCCGCGCTGCGCTACCTCGCCGACGACCACTTCCG
CGTGCTCACCGCCGTCGAAATGGGCATGCGCAACCACGACGTCGTCCCCG
TCGCCCTCATCTCCACCATCTCCGCCCTCAAGCACGGCGGCTGCGCCCGC
GCCCTCAAGCTCGTGCACAAGCACAAGCTCGTGCACCGCGACACCAAGCC
CTACGTCGGCTACCGCCTCACCACGCTGGGCTACGACTACCTCGCCCTCA
ACGCCCTCGTCAAGCGCGGCGTGCTGCACGCCGTGGGCCGCCCGCTGGGC
GTCGGCAAGGAGGCCGACGTCTTCGTCGTGTCCGCCGCCGACCAGCTCAT
CGACCGCCACCCGGAGCTCGCCGACACCCCGCACCTCGCCATGAAGCTGC
ACCGCCTGGGCCGCACCTCCTTCCGCGCCGTCAACGCCAAGCGCGACTAC
CTCGCCCACCGCAAGTCCGCCAGCTGGATCTACCTCTCGCGCCTGGCCGC
CGTCAACGAGTTTGCCTTCATGTGCGCCCTGCACGCCCGCCACTTCCCGG
TCCCGCGCCCGCTGGGCCACTCGCGCCACGTCGTCGTCATGGAGCTGTGC
CCGGGCACCCTGCTCAACCACGTGCACCACCTGCCGCACCCAGCCCGCGT
CGCCAACAACCTCATCCACGTCGCCGTCCGCCTCGCCGAGCACGGCCTCG
TCCACTGCGACCTCAACGAGTTCAACGTCATCGTCGACGACGACGCCGCC
CCCACCGTCATCGACTTTCCGCAGATGGTCTCCACGCGCCACCCGGACGC
CCCCCGCCTCTTCGCGCGCGACGTCGCAGCCATCCGCCGCTACTTCCAGC
ACAAGTTTGGCGTCGCCCCGCACCTCATGCTCAACCCCTCGCTGCACACC
GTCGCGCGCCACCCGTCGCCCCACCACCACCTGGACGTCGCCCTGTCTGC
CACCGGATTCAACAACCTTGCGCGCCCTGCTCTTGGCCCCGCCCCTGATG
CGCCCGACCAGCGTGCGCACCACCTCCTCCTAGCCGATCACCTTGACAGT
TTGCACATCTCACCCCCTCCCCAACCCCAGCCCCACCCGGAGCCCGTCGC
CCATGTGCATGCCGACATGCACCCTCAACCAGGCCCCCCCCGTACGGCTT
CCCAACATCACACTCAACAGCACCACGAGCAGCAAGCCCAAgtccacgtc
cataaccacgtcgacgcccatgccgacgtcgacgcccatgccgacgtcga
cgcccatgccgacgtcgacgcccatgccgacgtcgacgcccatgccgacg
tcgacgcccatgccgacgtcgacgcccatgccgacgtcgacgtccatgcc
gatgtcgacccatccgatcgcgtgcgccCTGGTGTCCCCATTAACAAGTC
TCTCATCGAAATGCGCGTGCGAAAGCAGCGGTCAAACCAATCAACAAGGC
GTCAGATGGCCAAGAGAAACATCGTCAAAGACTCGCAAAAACGAAAACTC
AAGTCTGAGCTCCAGTGTGCAGTATGGCGTTAG