Gvermi6634.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6634.t1
Unique NameGvermi6634.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1788953..1789696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog181119.XP_005529023.1
Preferred nameCYB561A3
PFAMsCytochrom_B561
Max annot lvl33208|Metazoa
KEGG koko:K16295
KEGG TC5.B.2.1
GOsGO:0000323,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0008150,GO:0008152,GO:0010008,GO:0012505,GO:0016020,GO:0016491,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0097708,GO:0098588,GO:0098805,GO:0098852
Evalue4.32e-12
EggNOG OGsKOG1619@1|root,KOG1619@2759|Eukaryota,38W3K@33154|Opisthokonta,3BHQX@33208|Metazoa,3CX2C@33213|Bilateria,48ATP@7711|Chordata,4921N@7742|Vertebrata,4GM4X@8782|Aves
DescriptionCytochrome b ascorbate-dependent protein
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6634Gvermi6634Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1788953..1789696 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6634.t1.stop1Gvermi6634.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1788953..1788955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6634.t1.CDS1Gvermi6634.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1788953..1789696 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6634.t1.exon1Gvermi6634.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1788953..1789696 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6634.t1.start1Gvermi6634.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1789694..1789696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6634.t1Gvermi6634.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1788953..1789696 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6634.t1 ID=Gvermi6634.t1|Name=Gvermi6634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=248bp
MARPAASHAFWALLATSYTIWILTLLWTLLALGGLGADGSRLFNWHPILA
SGAVLAVLTPGVLVQQPSRHGNGQTRDWRIKVVHGFCMVITFVVLSVAIS
VAYSSHVQQAKPNFYSLHSWLGLGTIFLMKGNIIAGLTSTVCVQWNGIGL
LGRSHRLGGIIVCLMAFVSMTVGFAEMQMNLGRIAKNVWQFKVVTAGILG
VATMCVGSGVVCVLVSREQDRRFAASVMDERIREKTAGDKKDVAMVL*
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spliced messenger RNA

>Gvermi6634.t1 ID=Gvermi6634.t1|Name=Gvermi6634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_88:1788953..1789696- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGTCCAGCAGCATCACATGCATTCTGGGCGTTGCTGGCCACATC
GTACACCATATGGATTCTCACTCTGTTATGGACATTGTTGGCGTTAGGTG
GGCTGGGAGCAGACGGTTCGCGGCTGTTCAACTGGCATCCCATTCTGGCA
TCCGGCGCGGTGCTGGCTGTTTTGACACCCGGTGTGTTGGTGCAGCAGCC
ATCGCGGCATGGAAACGGCCAAACACGTGATTGGCGCATAAAGGTGGTGC
ACGGCTTCTGTATGGTGATTACGTTTGTGGTGCTCTCCGTGGCCATCAGC
GTCGCGTATTCAAGCCATGTACAACAAGCCAAGCCAAACTTCTATTCCCT
GCACAGCTGGCTGGGACTTGGCACAATCTTTCTCATGAAGGGTAACATCA
TAGCAGGCCTAACGTCGACTGTATGCGTTCAATGGAACGGAATTGGTTTG
TTGGGTAGGTCTCATCGATTAGGGGGTATCATAGTCTGTCTGATGGCGTT
TGTCAGTATGACTGTTGGGTTTGCGGAGATGCAGATGAATCTGGGGCGGA
TTGCCAAGAATGTATGGCAGTTTAAAGTTGTGACTGCTGGTATTTTGGGT
GTTGCAACCATGTGTGTTGGGTCCGGAGTCGTGTGCGTACTTGTAAGTAG
AGAGCAGGACAGAAGATTTGCGGCGAGTGTTATGGATGAACGCATTCGGG
AAAAGACTGCAGGCGATAAGAAAGACGTGGCGATGGTACTGTAG
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protein sequence of Gvermi6634.t1

>Gvermi6634.t1 ID=Gvermi6634.t1|Name=Gvermi6634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MARPAASHAFWALLATSYTIWILTLLWTLLALGGLGADGSRLFNWHPILA
SGAVLAVLTPGVLVQQPSRHGNGQTRDWRIKVVHGFCMVITFVVLSVAIS
VAYSSHVQQAKPNFYSLHSWLGLGTIFLMKGNIIAGLTSTVCVQWNGIGL
LGRSHRLGGIIVCLMAFVSMTVGFAEMQMNLGRIAKNVWQFKVVTAGILG
VATMCVGSGVVCVLVSREQDRRFAASVMDERIREKTAGDKKDVAMVL*
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mRNA from alignment at ScGOVlb_88:1788953..1789696-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6634.t1 ID=Gvermi6634.t1|Name=Gvermi6634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_88:1788953..1789696- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACGTCCAGCAGCATCACATGCATTCTGGGCGTTGCTGGCCACATC
GTACACCATATGGATTCTCACTCTGTTATGGACATTGTTGGCGTTAGGTG
GGCTGGGAGCAGACGGTTCGCGGCTGTTCAACTGGCATCCCATTCTGGCA
TCCGGCGCGGTGCTGGCTGTTTTGACACCCGGTGTGTTGGTGCAGCAGCC
ATCGCGGCATGGAAACGGCCAAACACGTGATTGGCGCATAAAGGTGGTGC
ACGGCTTCTGTATGGTGATTACGTTTGTGGTGCTCTCCGTGGCCATCAGC
GTCGCGTATTCAAGCCATGTACAACAAGCCAAGCCAAACTTCTATTCCCT
GCACAGCTGGCTGGGACTTGGCACAATCTTTCTCATGAAGGGTAACATCA
TAGCAGGCCTAACGTCGACTGTATGCGTTCAATGGAACGGAATTGGTTTG
TTGGGTAGGTCTCATCGATTAGGGGGTATCATAGTCTGTCTGATGGCGTT
TGTCAGTATGACTGTTGGGTTTGCGGAGATGCAGATGAATCTGGGGCGGA
TTGCCAAGAATGTATGGCAGTTTAAAGTTGTGACTGCTGGTATTTTGGGT
GTTGCAACCATGTGTGTTGGGTCCGGAGTCGTGTGCGTACTTGTAAGTAG
AGAGCAGGACAGAAGATTTGCGGCGAGTGTTATGGATGAACGCATTCGGG
AAAAGACTGCAGGCGATAAGAAAGACGTGGCGATGGTACTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:1788953..1789696-

>Gvermi6634.t1 ID=Gvermi6634.t1|Name=Gvermi6634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=744bp|location=Sequence derived from alignment at ScGOVlb_88:1788953..1789696- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACGTCCAGCAGCATCACATGCATTCTGGGCGTTGCTGGCCACATC
GTACACCATATGGATTCTCACTCTGTTATGGACATTGTTGGCGTTAGGTG
GGCTGGGAGCAGACGGTTCGCGGCTGTTCAACTGGCATCCCATTCTGGCA
TCCGGCGCGGTGCTGGCTGTTTTGACACCCGGTGTGTTGGTGCAGCAGCC
ATCGCGGCATGGAAACGGCCAAACACGTGATTGGCGCATAAAGGTGGTGC
ACGGCTTCTGTATGGTGATTACGTTTGTGGTGCTCTCCGTGGCCATCAGC
GTCGCGTATTCAAGCCATGTACAACAAGCCAAGCCAAACTTCTATTCCCT
GCACAGCTGGCTGGGACTTGGCACAATCTTTCTCATGAAGGGTAACATCA
TAGCAGGCCTAACGTCGACTGTATGCGTTCAATGGAACGGAATTGGTTTG
TTGGGTAGGTCTCATCGATTAGGGGGTATCATAGTCTGTCTGATGGCGTT
TGTCAGTATGACTGTTGGGTTTGCGGAGATGCAGATGAATCTGGGGCGGA
TTGCCAAGAATGTATGGCAGTTTAAAGTTGTGACTGCTGGTATTTTGGGT
GTTGCAACCATGTGTGTTGGGTCCGGAGTCGTGTGCGTACTTGTAAGTAG
AGAGCAGGACAGAAGATTTGCGGCGAGTGTTATGGATGAACGCATTCGGG
AAAAGACTGCAGGCGATAAGAAAGACGTGGCGATGGTACTGTAG
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