Gvermi6628.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6628.t1
Unique NameGvermi6628.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1763442..1764410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708762.1
PFAMsTic22
Max annot lvl2759|Eukaryota
Evalue3.69e-17
EggNOG OGs2DZXZ@1|root,2S7E9@2759|Eukaryota
DescriptionTic22-like family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6628Gvermi6628Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1763442..1764410 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6628.t1.start1Gvermi6628.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1763442..1763444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6628.t1.CDS1Gvermi6628.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1763442..1764410 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6628.t1.exon1Gvermi6628.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1763442..1764410 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6628.t1.stop1Gvermi6628.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1764408..1764410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6628.t1Gvermi6628.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1763442..1764410 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6628.t1 ID=Gvermi6628.t1|Name=Gvermi6628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=323bp
MKTENKKVINSFFSSRVSTSFVSPALHLGFFQGSSLTPTCTPLKHLGLHI
KRSRSCSIHAPFHHGVTHKSNLRVSPCAKTTSSTSPFVKIIGFILIGGLL
FTAVQPLLRAAKTTDALLDAKLGKIPVFTVTDSTGRPFLSESDDGRLRRG
FFFIQPADAEKYLEKVMEQSEDAKVLAIGLNEAIKFLDTRAGPPKSVPEI
FELFPDDHEAALADELTQGAFHRNFGENGVPVFYLDGLAIKDDLQDTPVY
PLFFAKEKLDEALKELKTRDPSAVLDVNDLQIIDLRQTIKEIKANTNSKL
SRVVFIPLDDSMKRLRASTSSP*
back to top

spliced messenger RNA

>Gvermi6628.t1 ID=Gvermi6628.t1|Name=Gvermi6628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_88:1763442..1764410+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACCGAGAATAAGAAAGTCATAAACAGCTTCTTTTCATCCCGCGT
TTCAACCTCTTTTGTTTCCCCAGCCCTGCACTTAGGATTTTTTCAAGGTT
CTTCTCTCACGCCAACCTGTACGCCCCTCAAACATCTCGGATTGCACATT
AAGCGAAGTCGTTCTTGCTCGATACATGCTCCATTTCACCATGGGGTGAC
CCACAAGTCAAACCTACGAGTATCTCCTTGCGCAAAGACAACAAGCTCTA
CAAGCCCTTTTGTGAAAATCATAGGCTTTATCTTGATTGGCGGACTTCTG
TTCACGGCAGTTCAACCATTGTTAAGAGCAGCGAAGACCACAGATGCTCT
ACTGGATGCAAAGCTAGGAAAGATACCTGTGTTCACGGTCACTGATAGCA
CCGGCCGCCCGTTTCTTTCTGAGTCAGATGATGGCCGGCTTCGACGCGGT
TTTTTCTTTATTCAGCCTGCCGATGCAGAGAAGTACTTAGAGAAAGTAAT
GGAGCAAAGCGAGGATGCAAAAGTTCTCGCCATAGGCCTCAATGAGGCGA
TCAAGTTCCTAGATACTCGTGCAGGGCCGCCCAAATCAGTTCCCGAAATT
TTCGAGTTGTTTCCGGACGACCACGAAGCTGCTCTGGCCGACGAGCTTAC
TCAAGGTGCTTTTCACCGAAATTTTGGAGAGAATGGGGTTCCGGTTTTCT
ACTTGGATGGATTAGCCATAAAAGACGACCTTCAAGATACTCCTGTTTAT
CCTCTCTTCTTTGCAAAAGAGAAGCTTGACGAAGCTCTAAAAGAGCTGAA
AACGAGAGATCCTTCAGCCGTTCTTGATGTCAACGACTTGCAAATAATTG
ATCTAAGGCAAACTATCAAAGAGATTAAGGCCAATACCAACTCCAAGCTG
AGTCGTGTAGTATTCATCCCTTTAGATGACTCAATGAAACGACTGAGAGC
ATCAACTAGTTCTCCGTAA
back to top

protein sequence of Gvermi6628.t1

>Gvermi6628.t1 ID=Gvermi6628.t1|Name=Gvermi6628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=323bp
MKTENKKVINSFFSSRVSTSFVSPALHLGFFQGSSLTPTCTPLKHLGLHI
KRSRSCSIHAPFHHGVTHKSNLRVSPCAKTTSSTSPFVKIIGFILIGGLL
FTAVQPLLRAAKTTDALLDAKLGKIPVFTVTDSTGRPFLSESDDGRLRRG
FFFIQPADAEKYLEKVMEQSEDAKVLAIGLNEAIKFLDTRAGPPKSVPEI
FELFPDDHEAALADELTQGAFHRNFGENGVPVFYLDGLAIKDDLQDTPVY
PLFFAKEKLDEALKELKTRDPSAVLDVNDLQIIDLRQTIKEIKANTNSKL
SRVVFIPLDDSMKRLRASTSSP*
back to top

mRNA from alignment at ScGOVlb_88:1763442..1764410+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6628.t1 ID=Gvermi6628.t1|Name=Gvermi6628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_88:1763442..1764410+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGACCGAGAATAAGAAAGTCATAAACAGCTTCTTTTCATCCCGCGT
TTCAACCTCTTTTGTTTCCCCAGCCCTGCACTTAGGATTTTTTCAAGGTT
CTTCTCTCACGCCAACCTGTACGCCCCTCAAACATCTCGGATTGCACATT
AAGCGAAGTCGTTCTTGCTCGATACATGCTCCATTTCACCATGGGGTGAC
CCACAAGTCAAACCTACGAGTATCTCCTTGCGCAAAGACAACAAGCTCTA
CAAGCCCTTTTGTGAAAATCATAGGCTTTATCTTGATTGGCGGACTTCTG
TTCACGGCAGTTCAACCATTGTTAAGAGCAGCGAAGACCACAGATGCTCT
ACTGGATGCAAAGCTAGGAAAGATACCTGTGTTCACGGTCACTGATAGCA
CCGGCCGCCCGTTTCTTTCTGAGTCAGATGATGGCCGGCTTCGACGCGGT
TTTTTCTTTATTCAGCCTGCCGATGCAGAGAAGTACTTAGAGAAAGTAAT
GGAGCAAAGCGAGGATGCAAAAGTTCTCGCCATAGGCCTCAATGAGGCGA
TCAAGTTCCTAGATACTCGTGCAGGGCCGCCCAAATCAGTTCCCGAAATT
TTCGAGTTGTTTCCGGACGACCACGAAGCTGCTCTGGCCGACGAGCTTAC
TCAAGGTGCTTTTCACCGAAATTTTGGAGAGAATGGGGTTCCGGTTTTCT
ACTTGGATGGATTAGCCATAAAAGACGACCTTCAAGATACTCCTGTTTAT
CCTCTCTTCTTTGCAAAAGAGAAGCTTGACGAAGCTCTAAAAGAGCTGAA
AACGAGAGATCCTTCAGCCGTTCTTGATGTCAACGACTTGCAAATAATTG
ATCTAAGGCAAACTATCAAAGAGATTAAGGCCAATACCAACTCCAAGCTG
AGTCGTGTAGTATTCATCCCTTTAGATGACTCAATGAAACGACTGAGAGC
ATCAACTAGTTCTCCGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:1763442..1764410+

>Gvermi6628.t1 ID=Gvermi6628.t1|Name=Gvermi6628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=969bp|location=Sequence derived from alignment at ScGOVlb_88:1763442..1764410+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGACCGAGAATAAGAAAGTCATAAACAGCTTCTTTTCATCCCGCGT
TTCAACCTCTTTTGTTTCCCCAGCCCTGCACTTAGGATTTTTTCAAGGTT
CTTCTCTCACGCCAACCTGTACGCCCCTCAAACATCTCGGATTGCACATT
AAGCGAAGTCGTTCTTGCTCGATACATGCTCCATTTCACCATGGGGTGAC
CCACAAGTCAAACCTACGAGTATCTCCTTGCGCAAAGACAACAAGCTCTA
CAAGCCCTTTTGTGAAAATCATAGGCTTTATCTTGATTGGCGGACTTCTG
TTCACGGCAGTTCAACCATTGTTAAGAGCAGCGAAGACCACAGATGCTCT
ACTGGATGCAAAGCTAGGAAAGATACCTGTGTTCACGGTCACTGATAGCA
CCGGCCGCCCGTTTCTTTCTGAGTCAGATGATGGCCGGCTTCGACGCGGT
TTTTTCTTTATTCAGCCTGCCGATGCAGAGAAGTACTTAGAGAAAGTAAT
GGAGCAAAGCGAGGATGCAAAAGTTCTCGCCATAGGCCTCAATGAGGCGA
TCAAGTTCCTAGATACTCGTGCAGGGCCGCCCAAATCAGTTCCCGAAATT
TTCGAGTTGTTTCCGGACGACCACGAAGCTGCTCTGGCCGACGAGCTTAC
TCAAGGTGCTTTTCACCGAAATTTTGGAGAGAATGGGGTTCCGGTTTTCT
ACTTGGATGGATTAGCCATAAAAGACGACCTTCAAGATACTCCTGTTTAT
CCTCTCTTCTTTGCAAAAGAGAAGCTTGACGAAGCTCTAAAAGAGCTGAA
AACGAGAGATCCTTCAGCCGTTCTTGATGTCAACGACTTGCAAATAATTG
ATCTAAGGCAAACTATCAAAGAGATTAAGGCCAATACCAACTCCAAGCTG
AGTCGTGTAGTATTCATCCCTTTAGATGACTCAATGAAACGACTGAGAGC
ATCAACTAGTTCTCCGTAA
back to top