Gvermi6617.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6617.t1
Unique NameGvermi6617.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1559510..1560511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6617Gvermi6617Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1559510..1560511 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6617.t1.start1Gvermi6617.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1559510..1559512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6617.t1.CDS1Gvermi6617.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1559510..1560511 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6617.t1.exon1Gvermi6617.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1559510..1560511 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6617.t1.stop1Gvermi6617.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1560509..1560511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6617.t1Gvermi6617.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1559510..1560511 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6617.t1 ID=Gvermi6617.t1|Name=Gvermi6617.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=334bp
MSSQTAHQQSPEQPSQLLPPQQMSNPTSPNQPQTLNPQLHFLRQIKSLLM
EFEQIHKVNQTPLSDPHIRHIRAQIEKSMPRLYALQQQMRNHPSSEASRI
VFMAEERLKLFPDVTDAFLRTLHPPEATPNHRQAPRFPSLYPASPYSSKP
PLHNVNTPVFQSNTMPATTSNLSRPANYHYFSPVASNPHDSYAAKPPAIP
SAVADHRRSLTRTQEMLLRSVHALSSNYRQPFGSTWVDAPAALSPMEFAS
MSASVDRKMASTPSLYVGSAPHLGGFAHGLTQYAPRQDMEAAHYSAWDGA
VNQGGRYSSYARSDAPRSSIRNVQRKRSNSNER*
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spliced messenger RNA

>Gvermi6617.t1 ID=Gvermi6617.t1|Name=Gvermi6617.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_88:1559510..1560511+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGCAAACCGCGCATCAACAGTCACCGGAGCAACCATCGCAACT
GCTGCCACCGCAGCAGATGAGCAACCCCACCTCTCCAAACCAACCGCAGA
CGCTCAACCCCCAGCTCCATTTTCTCCGCCAAATCAAGTCCTTGTTGATG
GAGTTTGAGCAAATTCACAAGGTCAATCAGACCCCGCTGTCAGATCCTCA
TATTCGTCATATACGAGCCCAAATAGAGAAAAGTATGCCCCGCTTGTATG
CCCTGCAACAGCAGATGAGGAACCACCCATCGTCCGAAGCTTCGCGTATT
GTATTTATGGCCGAAGAGCGTCTGAAACTCTTCCCGGATGTTACTGATGC
ATTTCTTCGAACTTTGCATCCTCCAGAAGCTACTCCAAATCACCGCCAAG
CCCCCCGTTTTCCCTCCCTCTATCCCGCCTCACCCTACTCATCTAAACCG
CCTCTTCATAACGTCAACACTCCGGTCTTTCAGAGCAATACAATGCCTGC
TACAACATCCAATTTGTCCCGCCCTGCCAACTATCACTACTTTTCACCGG
TGGCCTCAAATCCACACGATAGCTATGCTGCCAAGCCTCCAGCCATACCA
TCTGCCGTCGCAGACCATCGTCGGTCTCTCACTCGTACTCAGGAAATGCT
CTTGCGCAGCGTGCATGCCCTATCAAGTAATTACCGACAGCCATTTGGCA
GTACTTGGGTTGATGCACCTGCCGCCCTATCACCCATGGAATTTGCCAGT
ATGTCCGCATCAGTTGACCGCAAGATGGCAAGTACGCCATCACTGTATGT
TGGTAGCGCGCCTCATCTCGGTGGCTTTGCGCATGGGCTCACGCAGTATG
CGCCTCGACAAGACATGGAGGCCGCACACTACAGCGCATGGGATGGTGCC
GTGAACCAAGGCGGTCGGTACAGCAGCTACGCCCGCTCCGATGCGCCTCG
TTCGAGTATTCGCAACGTACAACGTAAAAGGAGCAATTCCAACGAACGAT
GA
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protein sequence of Gvermi6617.t1

>Gvermi6617.t1 ID=Gvermi6617.t1|Name=Gvermi6617.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=334bp
MSSQTAHQQSPEQPSQLLPPQQMSNPTSPNQPQTLNPQLHFLRQIKSLLM
EFEQIHKVNQTPLSDPHIRHIRAQIEKSMPRLYALQQQMRNHPSSEASRI
VFMAEERLKLFPDVTDAFLRTLHPPEATPNHRQAPRFPSLYPASPYSSKP
PLHNVNTPVFQSNTMPATTSNLSRPANYHYFSPVASNPHDSYAAKPPAIP
SAVADHRRSLTRTQEMLLRSVHALSSNYRQPFGSTWVDAPAALSPMEFAS
MSASVDRKMASTPSLYVGSAPHLGGFAHGLTQYAPRQDMEAAHYSAWDGA
VNQGGRYSSYARSDAPRSSIRNVQRKRSNSNER*
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mRNA from alignment at ScGOVlb_88:1559510..1560511+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6617.t1 ID=Gvermi6617.t1|Name=Gvermi6617.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_88:1559510..1560511+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCGCAAACCGCGCATCAACAGTCACCGGAGCAACCATCGCAACT
GCTGCCACCGCAGCAGATGAGCAACCCCACCTCTCCAAACCAACCGCAGA
CGCTCAACCCCCAGCTCCATTTTCTCCGCCAAATCAAGTCCTTGTTGATG
GAGTTTGAGCAAATTCACAAGGTCAATCAGACCCCGCTGTCAGATCCTCA
TATTCGTCATATACGAGCCCAAATAGAGAAAAGTATGCCCCGCTTGTATG
CCCTGCAACAGCAGATGAGGAACCACCCATCGTCCGAAGCTTCGCGTATT
GTATTTATGGCCGAAGAGCGTCTGAAACTCTTCCCGGATGTTACTGATGC
ATTTCTTCGAACTTTGCATCCTCCAGAAGCTACTCCAAATCACCGCCAAG
CCCCCCGTTTTCCCTCCCTCTATCCCGCCTCACCCTACTCATCTAAACCG
CCTCTTCATAACGTCAACACTCCGGTCTTTCAGAGCAATACAATGCCTGC
TACAACATCCAATTTGTCCCGCCCTGCCAACTATCACTACTTTTCACCGG
TGGCCTCAAATCCACACGATAGCTATGCTGCCAAGCCTCCAGCCATACCA
TCTGCCGTCGCAGACCATCGTCGGTCTCTCACTCGTACTCAGGAAATGCT
CTTGCGCAGCGTGCATGCCCTATCAAGTAATTACCGACAGCCATTTGGCA
GTACTTGGGTTGATGCACCTGCCGCCCTATCACCCATGGAATTTGCCAGT
ATGTCCGCATCAGTTGACCGCAAGATGGCAAGTACGCCATCACTGTATGT
TGGTAGCGCGCCTCATCTCGGTGGCTTTGCGCATGGGCTCACGCAGTATG
CGCCTCGACAAGACATGGAGGCCGCACACTACAGCGCATGGGATGGTGCC
GTGAACCAAGGCGGTCGGTACAGCAGCTACGCCCGCTCCGATGCGCCTCG
TTCGAGTATTCGCAACGTACAACGTAAAAGGAGCAATTCCAACGAACGAT
GA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1559510..1560511+

>Gvermi6617.t1 ID=Gvermi6617.t1|Name=Gvermi6617.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1002bp|location=Sequence derived from alignment at ScGOVlb_88:1559510..1560511+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCGCAAACCGCGCATCAACAGTCACCGGAGCAACCATCGCAACT
GCTGCCACCGCAGCAGATGAGCAACCCCACCTCTCCAAACCAACCGCAGA
CGCTCAACCCCCAGCTCCATTTTCTCCGCCAAATCAAGTCCTTGTTGATG
GAGTTTGAGCAAATTCACAAGGTCAATCAGACCCCGCTGTCAGATCCTCA
TATTCGTCATATACGAGCCCAAATAGAGAAAAGTATGCCCCGCTTGTATG
CCCTGCAACAGCAGATGAGGAACCACCCATCGTCCGAAGCTTCGCGTATT
GTATTTATGGCCGAAGAGCGTCTGAAACTCTTCCCGGATGTTACTGATGC
ATTTCTTCGAACTTTGCATCCTCCAGAAGCTACTCCAAATCACCGCCAAG
CCCCCCGTTTTCCCTCCCTCTATCCCGCCTCACCCTACTCATCTAAACCG
CCTCTTCATAACGTCAACACTCCGGTCTTTCAGAGCAATACAATGCCTGC
TACAACATCCAATTTGTCCCGCCCTGCCAACTATCACTACTTTTCACCGG
TGGCCTCAAATCCACACGATAGCTATGCTGCCAAGCCTCCAGCCATACCA
TCTGCCGTCGCAGACCATCGTCGGTCTCTCACTCGTACTCAGGAAATGCT
CTTGCGCAGCGTGCATGCCCTATCAAGTAATTACCGACAGCCATTTGGCA
GTACTTGGGTTGATGCACCTGCCGCCCTATCACCCATGGAATTTGCCAGT
ATGTCCGCATCAGTTGACCGCAAGATGGCAAGTACGCCATCACTGTATGT
TGGTAGCGCGCCTCATCTCGGTGGCTTTGCGCATGGGCTCACGCAGTATG
CGCCTCGACAAGACATGGAGGCCGCACACTACAGCGCATGGGATGGTGCC
GTGAACCAAGGCGGTCGGTACAGCAGCTACGCCCGCTCCGATGCGCCTCG
TTCGAGTATTCGCAACGTACAACGTAAAAGGAGCAATTCCAACGAACGAT
GA
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