Gvermi6612.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6612.t1
Unique NameGvermi6612.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1539555..1540357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SN02
PFAMsABC_tran
Max annot lvl3041|Chlorophyta
Evalue1.6e-46
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota,37ZPH@33090|Viridiplantae,34KI0@3041|Chlorophyta
DescriptionABC transporter
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6612Gvermi6612Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1539555..1540357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6612.t1Gvermi6612.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1539555..1540357 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6612.t1.stop1Gvermi6612.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1539555..1539557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6612.t1.CDS1Gvermi6612.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1539555..1539784 -
Gvermi6612.t1.CDS2Gvermi6612.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1539880..1540357 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6612.t1.exon1Gvermi6612.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1539555..1539784 -
Gvermi6612.t1.exon2Gvermi6612.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1539880..1540357 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6612.t1.intron1Gvermi6612.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1539785..1539879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6612.t1.start1Gvermi6612.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1540355..1540357 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6612.t1 ID=Gvermi6612.t1|Name=Gvermi6612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=236bp
MLHVRELRKTYGARDAPALRDLSLHLAPAEIVFLVGPSGAGKTTALRCIA
NLDPFDAGAVTVDGRSPRQTGFAQWRRRVMYVPQHRVALPGTPAALFERA
LALAAHAPPADPPRDRDRDRDRDRDRDPAARLERFVDVCRSMGLSRANVC
TQQWSELSGGQAQRATVSLCIALRPSVLLLDEPSSSCDLQSTLSMERAIK
RSNIAAVWVSHDTSQPHRVGGRIINMQPPPAAASH*
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spliced messenger RNA

>Gvermi6612.t1 ID=Gvermi6612.t1|Name=Gvermi6612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=708bp|location=Sequence derived from alignment at ScGOVlb_88:1539555..1540357- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCACGTGCGCGAGCTGCGCAAGACGTACGGCGCGCGCGACGCCCC
CGCGCTGCGCGACCTGTCGCTGCATCTGGCGCCGGCCGAGATCGTCTTCC
TGGTCGGCCCCAGCGGCGCCGGCAAGACCACCGCCCTGCGCTGCATCGCC
AACCTGGACCCGTTCGACGCCGGCGCCGTCACCGTCGACGGCCGCTCCCC
GCGCCAGACCGGCTTTGCCCAGTGGCGCCGCCGCGTCATGTACGTCCCGC
AGCACCGCGTCGCCCTCCCCGGCACCCCGGCCGCCCTCTTTGAGCGCGCC
CTCGCCCTCGCCGCCCACGCGCCACCCGCCGACCCGCCCCGCGACCGCGA
CCGCGACCGCGACCGCGACCGCGACCGCGACCCCGCCGCGCGCCTCGAGC
GCTTCGTCGACGTGTGCCGCTCCATGGGACTGTCGCGCGCTAACGTCTGC
ACCCAGCAGTGGTCCGAGCTGTCCGGAGGCCAGGCGCAGCGCGCCACCGT
GTCGCTGTGCATCGCGCTGCGCCCCAGCGTGCTGCTGCTGGACGAGCCGT
CCAGCAGCTGCGACCTGCAATCCACGCTCAGCATGGAGCGCGCCATCAAG
CGCTCCAACATCGCCGCCGTGTGGGTGTCGCACGACACCTCGCAGCCGCA
CCGCGTCGGCGGCCGCATCATCAACATGCAGCCGCCGCCCGCCGCCGCCT
CGCACTGA
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protein sequence of Gvermi6612.t1

>Gvermi6612.t1 ID=Gvermi6612.t1|Name=Gvermi6612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=236bp
MLHVRELRKTYGARDAPALRDLSLHLAPAEIVFLVGPSGAGKTTALRCIA
NLDPFDAGAVTVDGRSPRQTGFAQWRRRVMYVPQHRVALPGTPAALFERA
LALAAHAPPADPPRDRDRDRDRDRDRDPAARLERFVDVCRSMGLSRANVC
TQQWSELSGGQAQRATVSLCIALRPSVLLLDEPSSSCDLQSTLSMERAIK
RSNIAAVWVSHDTSQPHRVGGRIINMQPPPAAASH*
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mRNA from alignment at ScGOVlb_88:1539555..1540357-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6612.t1 ID=Gvermi6612.t1|Name=Gvermi6612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=803bp|location=Sequence derived from alignment at ScGOVlb_88:1539555..1540357- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCACGTGCGCGAGCTGCGCAAGACGTACGGCGCGCGCGACGCCCC
CGCGCTGCGCGACCTGTCGCTGCATCTGGCGCCGGCCGAGATCGTCTTCC
TGGTCGGCCCCAGCGGCGCCGGCAAGACCACCGCCCTGCGCTGCATCGCC
AACCTGGACCCGTTCGACGCCGGCGCCGTCACCGTCGACGGCCGCTCCCC
GCGCCAGACCGGCTTTGCCCAGTGGCGCCGCCGCGTCATGTACGTCCCGC
AGCACCGCGTCGCCCTCCCCGGCACCCCGGCCGCCCTCTTTGAGCGCGCC
CTCGCCCTCGCCGCCCACGCGCCACCCGCCGACCCGCCCCGCGACCGCGA
CCGCGACCGCGACCGCGACCGCGACCGCGACCCCGCCGCGCGCCTCGAGC
GCTTCGTCGACGTGTGCCGCTCCATGGGACTGTCGCGCGCTAACGTCTGC
ACCCAGCAGTGGTCCGAGCTGTCCGGAGGTGAGTGAGCCGCGCGCCGCCC
CCGTCCGCTCCGCGCCCGCGCCCGCGCCCGCGCCCGCGCCCGCCGCTAAC
GCCCGCCCCGCCGCCGCAACCAGGCCAGGCGCAGCGCGCCACCGTGTCGC
TGTGCATCGCGCTGCGCCCCAGCGTGCTGCTGCTGGACGAGCCGTCCAGC
AGCTGCGACCTGCAATCCACGCTCAGCATGGAGCGCGCCATCAAGCGCTC
CAACATCGCCGCCGTGTGGGTGTCGCACGACACCTCGCAGCCGCACCGCG
TCGGCGGCCGCATCATCAACATGCAGCCGCCGCCCGCCGCCGCCTCGCAC
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1539555..1540357-

>Gvermi6612.t1 ID=Gvermi6612.t1|Name=Gvermi6612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=708bp|location=Sequence derived from alignment at ScGOVlb_88:1539555..1540357- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCACGTGCGCGAGCTGCGCAAGACGTACGGCGCGCGCGACGCCCC
CGCGCTGCGCGACCTGTCGCTGCATCTGGCGCCGGCCGAGATCGTCTTCC
TGGTCGGCCCCAGCGGCGCCGGCAAGACCACCGCCCTGCGCTGCATCGCC
AACCTGGACCCGTTCGACGCCGGCGCCGTCACCGTCGACGGCCGCTCCCC
GCGCCAGACCGGCTTTGCCCAGTGGCGCCGCCGCGTCATGTACGTCCCGC
AGCACCGCGTCGCCCTCCCCGGCACCCCGGCCGCCCTCTTTGAGCGCGCC
CTCGCCCTCGCCGCCCACGCGCCACCCGCCGACCCGCCCCGCGACCGCGA
CCGCGACCGCGACCGCGACCGCGACCGCGACCCCGCCGCGCGCCTCGAGC
GCTTCGTCGACGTGTGCCGCTCCATGGGACTGTCGCGCGCTAACGTCTGC
ACCCAGCAGTGGTCCGAGCTGTCCGGAGGCCAGGCGCAGCGCGCCACCGT
GTCGCTGTGCATCGCGCTGCGCCCCAGCGTGCTGCTGCTGGACGAGCCGT
CCAGCAGCTGCGACCTGCAATCCACGCTCAGCATGGAGCGCGCCATCAAG
CGCTCCAACATCGCCGCCGTGTGGGTGTCGCACGACACCTCGCAGCCGCA
CCGCGTCGGCGGCCGCATCATCAACATGCAGCCGCCGCCCGCCGCCGCCT
CGCACTGA
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