Gvermi6610.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6610.t1
Unique Name	Gvermi6610.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	590

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1534529..1536298 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705743.1
Preferred name	PRP28
PFAMs	DEAD,Helicase_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12858
KEGG Pathway	ko03040,map03040
KEGG Module	M00354
GOs	GO:0000245,GO:0000375,GO:0000377,GO:0000384,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005730,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue	1.75e-172
EggNOG OGs	COG0513@1\|root,KOG0333@2759\|Eukaryota
EC	3.6.4.13
Description	helicase activity
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6610	Gvermi6610	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1534529..1536298 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6610.t1.stop1	Gvermi6610.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1534529..1534531 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6610.t1.CDS1	Gvermi6610.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1534529..1536298 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6610.t1.exon1	Gvermi6610.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1534529..1536298 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6610.t1.start1	Gvermi6610.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1536296..1536298 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6610.t1	Gvermi6610.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1534529..1536298 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1534529..1536298-
coding sequence from alignment at ScGOVlb_88:1534529..1536298-

mRNA sequence

>Gvermi6610.t1 ID=Gvermi6610.t1|Name=Gvermi6610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=590bp
MRVPISLEELKRQRDEEESKASRPVFMSKSRREAVLEGQRNKRKAKETNH
APRRLPFKRSRKETKHVNFTHAVSEAESKEHQGSDERRTGTKYVKSSRGR
HSSKFRFGWDESDDTAADDDLRRLGAPIPQFGRGQLGGMSDIFSVKGSSR
SHLRDARHWSEKPRDQMSDRDWRIFREDFLITVRSSNAPAPNPARNWDET
GLPQKILDLIKRVVRYERPSPIQMSSIPVGLAKRDCIGLAETGSGKTAAF
VLPMIVHLMNMPIMTAANANNGPYALVVAPTRELALQIVTEAKKFTDPMG
YRVVAIIGGQEMDIQAMSLQAGCEVVVCTPGRMVDLLDRQMAALGNCNYL
ILDEADRMIDMGFEPQLAQVLDCIPGGDRRTFMFSATMSPAVERLARSYL
KDPVVISVGETGKAADNVNQRVEFFSSEARRRSRFIELLETLETPILVFS
NTRSGCEMICRYVEANSAVRTVIMHSGKSQEQREKTLEGFRSGRFGVLIA
TDVVGRGIDIKGVKHVINFELPKTIEAYTHRIGRTGRAGEKGTAWSLATE
TNRELFPLLASLLKKSGANVPPEILREAKGSHGSRAITE*

spliced messenger RNA

>Gvermi6610.t1 ID=Gvermi6610.t1|Name=Gvermi6610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at ScGOVlb_88:1534529..1536298- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTACCCATTTCTCTTGAAGAGCTAAAACGCCAAAGAGATGAAGA
AGAGTCAAAGGCAAGTCGTCCGGTGTTTATGAGCAAGTCTCGCAGAGAGG
CAGTGCTAGAAGGACAGCGAAACAAGAGGAAAGCGAAGGAAACAAATCAT
GCTCCTCGCAGACTTCCGTTCAAAAGAAGTCGCAAAGAGACGAAACACGT
CAACTTCACTCACGCTGTCTCGGAAGCTGAGAGCAAAGAGCACCAAGGGT
CCGATGAACGCCGCACCGGCACAAAATACGTGAAATCTTCGCGGGGGCGT
CACTCATCAAAATTTCGTTTTGGTTGGGATGAATCTGACGATACAGCCGC
CGATGACGACTTGCGAAGACTGGGGGCACCGATTCCGCAATTTGGGAGGG
GGCAGTTAGGAGGTATGTCGGACATCTTCAGTGTCAAAGGTTCAAGTCGC
TCACACCTGCGTGATGCACGACACTGGTCCGAAAAGCCCAGGGACCAGAT
GAGTGATCGAGACTGGCGAATCTTTCGGGAAGACTTCCTAATCACAGTCC
GCTCATCTAATGCACCAGCTCCCAACCCTGCTCGAAATTGGGATGAAACT
GGCTTACCGCAAAAAATACTTGACTTGATAAAGAGGGTTGTAAGATATGA
ACGACCAAGTCCAATACAGATGTCGTCGATCCCAGTTGGGCTGGCCAAGC
GTGATTGCATTGGTCTGGCAGAGACCGGTTCGGGAAAAACGGCTGCGTTT
GTGTTGCCAATGATAGTGCATTTGATGAACATGCCGATTATGACAGCAGC
TAATGCAAACAACGGTCCGTATGCTCTAGTTGTAGCACCAACACGTGAAT
TGGCACTGCAGATAGTGACTGAAGCAAAAAAGTTCACTGATCCAATGGGG
TATCGGGTGGTTGCAATTATCGGTGGTCAAGAAATGGATATCCAAGCCAT
GTCACTGCAAGCGGGCTGTGAGGTTGTTGTCTGTACCCCAGGGCGAATGG
TAGACCTACTTGATCGACAAATGGCTGCTCTTGGGAATTGCAACTACCTG
ATTCTTGATGAAGCGGATAGAATGATTGATATGGGCTTCGAACCACAATT
AGCACAGGTACTTGACTGTATACCAGGAGGGGACAGGCGAACTTTTATGT
TCAGTGCCACAATGTCTCCGGCTGTCGAGCGATTGGCGAGGAGCTATTTG
AAAGATCCCGTCGTCATTTCAGTGGGAGAGACTGGAAAAGCAGCTGATAA
TGTTAATCAACGAGTAGAGTTCTTCAGTTCTGAAGCTCGGCGACGAAGCC
GTTTTATTGAACTTTTGGAGACCTTAGAAACCCCCATTTTGGTATTCTCA
AATACCAGAAGTGGTTGTGAAATGATATGTCGGTATGTCGAGGCGAATTC
AGCTGTGCGCACAGTCATCATGCATTCTGGAAAATCCCAAGAGCAAAGGG
AAAAAACACTGGAAGGTTTTCGGTCTGGTAGGTTTGGAGTTCTGATTGCC
ACCGATGTGGTCGGAAGGGGTATCGACATTAAAGGTGTCAAACATGTGAT
TAACTTTGAGCTACCAAAAACCATTGAGGCATACACGCACCGAATTGGGC
GCACCGGAAGAGCTGGGGAGAAGGGCACTGCATGGTCCCTGGCAACAGAA
ACCAACAGAGAACTTTTCCCTCTACTAGCATCATTGCTCAAAAAGAGTGG
GGCCAATGTACCGCCCGAGATTCTTCGGGAAGCAAAGGGTTCTCACGGAT
CTAGAGCAATAACAGAATAA

protein sequence of Gvermi6610.t1

>Gvermi6610.t1 ID=Gvermi6610.t1|Name=Gvermi6610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=590bp
MRVPISLEELKRQRDEEESKASRPVFMSKSRREAVLEGQRNKRKAKETNH
APRRLPFKRSRKETKHVNFTHAVSEAESKEHQGSDERRTGTKYVKSSRGR
HSSKFRFGWDESDDTAADDDLRRLGAPIPQFGRGQLGGMSDIFSVKGSSR
SHLRDARHWSEKPRDQMSDRDWRIFREDFLITVRSSNAPAPNPARNWDET
GLPQKILDLIKRVVRYERPSPIQMSSIPVGLAKRDCIGLAETGSGKTAAF
VLPMIVHLMNMPIMTAANANNGPYALVVAPTRELALQIVTEAKKFTDPMG
YRVVAIIGGQEMDIQAMSLQAGCEVVVCTPGRMVDLLDRQMAALGNCNYL
ILDEADRMIDMGFEPQLAQVLDCIPGGDRRTFMFSATMSPAVERLARSYL
KDPVVISVGETGKAADNVNQRVEFFSSEARRRSRFIELLETLETPILVFS
NTRSGCEMICRYVEANSAVRTVIMHSGKSQEQREKTLEGFRSGRFGVLIA
TDVVGRGIDIKGVKHVINFELPKTIEAYTHRIGRTGRAGEKGTAWSLATE
TNRELFPLLASLLKKSGANVPPEILREAKGSHGSRAITE*

mRNA from alignment at ScGOVlb_88:1534529..1536298-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6610.t1 ID=Gvermi6610.t1|Name=Gvermi6610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at ScGOVlb_88:1534529..1536298- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGTACCCATTTCTCTTGAAGAGCTAAAACGCCAAAGAGATGAAGA
AGAGTCAAAGGCAAGTCGTCCGGTGTTTATGAGCAAGTCTCGCAGAGAGG
CAGTGCTAGAAGGACAGCGAAACAAGAGGAAAGCGAAGGAAACAAATCAT
GCTCCTCGCAGACTTCCGTTCAAAAGAAGTCGCAAAGAGACGAAACACGT
CAACTTCACTCACGCTGTCTCGGAAGCTGAGAGCAAAGAGCACCAAGGGT
CCGATGAACGCCGCACCGGCACAAAATACGTGAAATCTTCGCGGGGGCGT
CACTCATCAAAATTTCGTTTTGGTTGGGATGAATCTGACGATACAGCCGC
CGATGACGACTTGCGAAGACTGGGGGCACCGATTCCGCAATTTGGGAGGG
GGCAGTTAGGAGGTATGTCGGACATCTTCAGTGTCAAAGGTTCAAGTCGC
TCACACCTGCGTGATGCACGACACTGGTCCGAAAAGCCCAGGGACCAGAT
GAGTGATCGAGACTGGCGAATCTTTCGGGAAGACTTCCTAATCACAGTCC
GCTCATCTAATGCACCAGCTCCCAACCCTGCTCGAAATTGGGATGAAACT
GGCTTACCGCAAAAAATACTTGACTTGATAAAGAGGGTTGTAAGATATGA
ACGACCAAGTCCAATACAGATGTCGTCGATCCCAGTTGGGCTGGCCAAGC
GTGATTGCATTGGTCTGGCAGAGACCGGTTCGGGAAAAACGGCTGCGTTT
GTGTTGCCAATGATAGTGCATTTGATGAACATGCCGATTATGACAGCAGC
TAATGCAAACAACGGTCCGTATGCTCTAGTTGTAGCACCAACACGTGAAT
TGGCACTGCAGATAGTGACTGAAGCAAAAAAGTTCACTGATCCAATGGGG
TATCGGGTGGTTGCAATTATCGGTGGTCAAGAAATGGATATCCAAGCCAT
GTCACTGCAAGCGGGCTGTGAGGTTGTTGTCTGTACCCCAGGGCGAATGG
TAGACCTACTTGATCGACAAATGGCTGCTCTTGGGAATTGCAACTACCTG
ATTCTTGATGAAGCGGATAGAATGATTGATATGGGCTTCGAACCACAATT
AGCACAGGTACTTGACTGTATACCAGGAGGGGACAGGCGAACTTTTATGT
TCAGTGCCACAATGTCTCCGGCTGTCGAGCGATTGGCGAGGAGCTATTTG
AAAGATCCCGTCGTCATTTCAGTGGGAGAGACTGGAAAAGCAGCTGATAA
TGTTAATCAACGAGTAGAGTTCTTCAGTTCTGAAGCTCGGCGACGAAGCC
GTTTTATTGAACTTTTGGAGACCTTAGAAACCCCCATTTTGGTATTCTCA
AATACCAGAAGTGGTTGTGAAATGATATGTCGGTATGTCGAGGCGAATTC
AGCTGTGCGCACAGTCATCATGCATTCTGGAAAATCCCAAGAGCAAAGGG
AAAAAACACTGGAAGGTTTTCGGTCTGGTAGGTTTGGAGTTCTGATTGCC
ACCGATGTGGTCGGAAGGGGTATCGACATTAAAGGTGTCAAACATGTGAT
TAACTTTGAGCTACCAAAAACCATTGAGGCATACACGCACCGAATTGGGC
GCACCGGAAGAGCTGGGGAGAAGGGCACTGCATGGTCCCTGGCAACAGAA
ACCAACAGAGAACTTTTCCCTCTACTAGCATCATTGCTCAAAAAGAGTGG
GGCCAATGTACCGCCCGAGATTCTTCGGGAAGCAAAGGGTTCTCACGGAT
CTAGAGCAATAACAGAATAA

Coding sequence (CDS) from alignment at ScGOVlb_88:1534529..1536298-

>Gvermi6610.t1 ID=Gvermi6610.t1|Name=Gvermi6610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1770bp|location=Sequence derived from alignment at ScGOVlb_88:1534529..1536298- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGTACCCATTTCTCTTGAAGAGCTAAAACGCCAAAGAGATGAAGA
AGAGTCAAAGGCAAGTCGTCCGGTGTTTATGAGCAAGTCTCGCAGAGAGG
CAGTGCTAGAAGGACAGCGAAACAAGAGGAAAGCGAAGGAAACAAATCAT
GCTCCTCGCAGACTTCCGTTCAAAAGAAGTCGCAAAGAGACGAAACACGT
CAACTTCACTCACGCTGTCTCGGAAGCTGAGAGCAAAGAGCACCAAGGGT
CCGATGAACGCCGCACCGGCACAAAATACGTGAAATCTTCGCGGGGGCGT
CACTCATCAAAATTTCGTTTTGGTTGGGATGAATCTGACGATACAGCCGC
CGATGACGACTTGCGAAGACTGGGGGCACCGATTCCGCAATTTGGGAGGG
GGCAGTTAGGAGGTATGTCGGACATCTTCAGTGTCAAAGGTTCAAGTCGC
TCACACCTGCGTGATGCACGACACTGGTCCGAAAAGCCCAGGGACCAGAT
GAGTGATCGAGACTGGCGAATCTTTCGGGAAGACTTCCTAATCACAGTCC
GCTCATCTAATGCACCAGCTCCCAACCCTGCTCGAAATTGGGATGAAACT
GGCTTACCGCAAAAAATACTTGACTTGATAAAGAGGGTTGTAAGATATGA
ACGACCAAGTCCAATACAGATGTCGTCGATCCCAGTTGGGCTGGCCAAGC
GTGATTGCATTGGTCTGGCAGAGACCGGTTCGGGAAAAACGGCTGCGTTT
GTGTTGCCAATGATAGTGCATTTGATGAACATGCCGATTATGACAGCAGC
TAATGCAAACAACGGTCCGTATGCTCTAGTTGTAGCACCAACACGTGAAT
TGGCACTGCAGATAGTGACTGAAGCAAAAAAGTTCACTGATCCAATGGGG
TATCGGGTGGTTGCAATTATCGGTGGTCAAGAAATGGATATCCAAGCCAT
GTCACTGCAAGCGGGCTGTGAGGTTGTTGTCTGTACCCCAGGGCGAATGG
TAGACCTACTTGATCGACAAATGGCTGCTCTTGGGAATTGCAACTACCTG
ATTCTTGATGAAGCGGATAGAATGATTGATATGGGCTTCGAACCACAATT
AGCACAGGTACTTGACTGTATACCAGGAGGGGACAGGCGAACTTTTATGT
TCAGTGCCACAATGTCTCCGGCTGTCGAGCGATTGGCGAGGAGCTATTTG
AAAGATCCCGTCGTCATTTCAGTGGGAGAGACTGGAAAAGCAGCTGATAA
TGTTAATCAACGAGTAGAGTTCTTCAGTTCTGAAGCTCGGCGACGAAGCC
GTTTTATTGAACTTTTGGAGACCTTAGAAACCCCCATTTTGGTATTCTCA
AATACCAGAAGTGGTTGTGAAATGATATGTCGGTATGTCGAGGCGAATTC
AGCTGTGCGCACAGTCATCATGCATTCTGGAAAATCCCAAGAGCAAAGGG
AAAAAACACTGGAAGGTTTTCGGTCTGGTAGGTTTGGAGTTCTGATTGCC
ACCGATGTGGTCGGAAGGGGTATCGACATTAAAGGTGTCAAACATGTGAT
TAACTTTGAGCTACCAAAAACCATTGAGGCATACACGCACCGAATTGGGC
GCACCGGAAGAGCTGGGGAGAAGGGCACTGCATGGTCCCTGGCAACAGAA
ACCAACAGAGAACTTTTCCCTCTACTAGCATCATTGCTCAAAAAGAGTGG
GGCCAATGTACCGCCCGAGATTCTTCGGGAAGCAAAGGGTTCTCACGGAT
CTAGAGCAATAACAGAATAA