Gvermi6569.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6569.t1
Unique NameGvermi6569.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1370273..1371145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog638303.Thal_0247
Preferred namethiD
PFAMsPhos_pyr_kin,TMP-TENI
Max annot lvl2|Bacteria
KEGG rclassRC00002,RC00017,RC00224,RC03251,RC03252,RC03255,RC03397
KEGG koko:K00941,ko:K03147,ko:K14153
KEGG ReactionR03223,R03471,R03472,R04509,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
Evalue2.63e-84
EggNOG OGsCOG0351@1|root,COG0351@2|Bacteria
EC2.5.1.3,2.7.1.49,2.7.4.7,4.1.99.17
Descriptionphosphomethylpyrimidine kinase activity
COG categoryH
BiGG ReactioniAF987.Gmet_2909
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6569Gvermi6569Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1370273..1371145 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6569.t1.stop1Gvermi6569.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1370273..1370275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6569.t1.CDS1Gvermi6569.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1370273..1371145 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6569.t1.exon1Gvermi6569.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1370273..1371145 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6569.t1.start1Gvermi6569.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1371143..1371145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6569.t1Gvermi6569.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1370273..1371145 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6569.t1 ID=Gvermi6569.t1|Name=Gvermi6569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp
MASSFRIPCVLTVAGSDSGGGAGIQADLKTFTALKVYGASVITALTAQNT
KAVQGIHVPPLAFIEQQLESVLSDISNVALKTGMLPSPGVIKSVAKAVRR
YNIPFVVVDPVLVATSGDSLAVTDTKDALVEELFPLATIVTPNLQEAEEL
TGMRIQSSSDLRRACERLLEMGCRSVLLKGGHAIESGMRDECAQNKEDKN
LASDIFYDGQDFEVFSGPRVNTKNTHGTGCTLAAAITAFLALGKNLRDAV
RDAKHYVFRCIIDGIEVGHGNGPLNHMHFIPKFSKEEAQT*
back to top

spliced messenger RNA

>Gvermi6569.t1 ID=Gvermi6569.t1|Name=Gvermi6569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_88:1370273..1371145- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTAGTTTTCGAATTCCCTGTGTGCTAACCGTTGCTGGTTCTGA
TTCTGGAGGTGGTGCTGGAATACAGGCGGATTTAAAGACTTTCACGGCGT
TAAAGGTGTATGGAGCTAGCGTTATAACTGCACTCACGGCTCAGAATACA
AAAGCAGTCCAAGGCATTCATGTGCCACCCTTGGCTTTCATTGAACAACA
ATTGGAAAGCGTTCTTTCCGACATAAGCAATGTGGCCTTAAAGACCGGCA
TGCTTCCCAGCCCTGGAGTGATTAAGAGCGTCGCAAAAGCAGTTCGCCGA
TACAATATTCCTTTCGTCGTGGTTGATCCAGTGCTCGTAGCCACTAGCGG
CGATTCATTGGCGGTCACCGATACGAAAGATGCATTGGTCGAGGAGCTGT
TTCCATTAGCCACGATTGTCACGCCGAACTTGCAAGAGGCTGAGGAGTTA
ACCGGAATGAGGATTCAATCATCATCTGATCTACGACGCGCTTGTGAAAG
GCTATTAGAAATGGGATGTCGCAGTGTTCTTCTCAAAGGCGGACATGCTA
TTGAATCGGGCATGAGAGACGAGTGTGCCCAGAACAAAGAGGATAAGAAC
TTGGCATCAGATATATTCTACGATGGGCAAGACTTTGAAGTGTTCAGTGG
ACCTCGAGTAAACACTAAGAACACTCATGGTACGGGATGCACTCTTGCCG
CTGCTATCACCGCCTTTTTGGCCCTTGGAAAGAACCTTCGAGATGCTGTG
CGTGATGCGAAGCACTACGTGTTCCGATGCATTATTGACGGAATCGAGGT
CGGACATGGAAATGGACCACTCAACCACATGCATTTCATTCCGAAATTCA
GCAAGGAAGAAGCACAGACATGA
back to top

protein sequence of Gvermi6569.t1

>Gvermi6569.t1 ID=Gvermi6569.t1|Name=Gvermi6569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=291bp
MASSFRIPCVLTVAGSDSGGGAGIQADLKTFTALKVYGASVITALTAQNT
KAVQGIHVPPLAFIEQQLESVLSDISNVALKTGMLPSPGVIKSVAKAVRR
YNIPFVVVDPVLVATSGDSLAVTDTKDALVEELFPLATIVTPNLQEAEEL
TGMRIQSSSDLRRACERLLEMGCRSVLLKGGHAIESGMRDECAQNKEDKN
LASDIFYDGQDFEVFSGPRVNTKNTHGTGCTLAAAITAFLALGKNLRDAV
RDAKHYVFRCIIDGIEVGHGNGPLNHMHFIPKFSKEEAQT*
back to top

mRNA from alignment at ScGOVlb_88:1370273..1371145-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6569.t1 ID=Gvermi6569.t1|Name=Gvermi6569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_88:1370273..1371145- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCTAGTTTTCGAATTCCCTGTGTGCTAACCGTTGCTGGTTCTGA
TTCTGGAGGTGGTGCTGGAATACAGGCGGATTTAAAGACTTTCACGGCGT
TAAAGGTGTATGGAGCTAGCGTTATAACTGCACTCACGGCTCAGAATACA
AAAGCAGTCCAAGGCATTCATGTGCCACCCTTGGCTTTCATTGAACAACA
ATTGGAAAGCGTTCTTTCCGACATAAGCAATGTGGCCTTAAAGACCGGCA
TGCTTCCCAGCCCTGGAGTGATTAAGAGCGTCGCAAAAGCAGTTCGCCGA
TACAATATTCCTTTCGTCGTGGTTGATCCAGTGCTCGTAGCCACTAGCGG
CGATTCATTGGCGGTCACCGATACGAAAGATGCATTGGTCGAGGAGCTGT
TTCCATTAGCCACGATTGTCACGCCGAACTTGCAAGAGGCTGAGGAGTTA
ACCGGAATGAGGATTCAATCATCATCTGATCTACGACGCGCTTGTGAAAG
GCTATTAGAAATGGGATGTCGCAGTGTTCTTCTCAAAGGCGGACATGCTA
TTGAATCGGGCATGAGAGACGAGTGTGCCCAGAACAAAGAGGATAAGAAC
TTGGCATCAGATATATTCTACGATGGGCAAGACTTTGAAGTGTTCAGTGG
ACCTCGAGTAAACACTAAGAACACTCATGGTACGGGATGCACTCTTGCCG
CTGCTATCACCGCCTTTTTGGCCCTTGGAAAGAACCTTCGAGATGCTGTG
CGTGATGCGAAGCACTACGTGTTCCGATGCATTATTGACGGAATCGAGGT
CGGACATGGAAATGGACCACTCAACCACATGCATTTCATTCCGAAATTCA
GCAAGGAAGAAGCACAGACATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:1370273..1371145-

>Gvermi6569.t1 ID=Gvermi6569.t1|Name=Gvermi6569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=873bp|location=Sequence derived from alignment at ScGOVlb_88:1370273..1371145- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCTAGTTTTCGAATTCCCTGTGTGCTAACCGTTGCTGGTTCTGA
TTCTGGAGGTGGTGCTGGAATACAGGCGGATTTAAAGACTTTCACGGCGT
TAAAGGTGTATGGAGCTAGCGTTATAACTGCACTCACGGCTCAGAATACA
AAAGCAGTCCAAGGCATTCATGTGCCACCCTTGGCTTTCATTGAACAACA
ATTGGAAAGCGTTCTTTCCGACATAAGCAATGTGGCCTTAAAGACCGGCA
TGCTTCCCAGCCCTGGAGTGATTAAGAGCGTCGCAAAAGCAGTTCGCCGA
TACAATATTCCTTTCGTCGTGGTTGATCCAGTGCTCGTAGCCACTAGCGG
CGATTCATTGGCGGTCACCGATACGAAAGATGCATTGGTCGAGGAGCTGT
TTCCATTAGCCACGATTGTCACGCCGAACTTGCAAGAGGCTGAGGAGTTA
ACCGGAATGAGGATTCAATCATCATCTGATCTACGACGCGCTTGTGAAAG
GCTATTAGAAATGGGATGTCGCAGTGTTCTTCTCAAAGGCGGACATGCTA
TTGAATCGGGCATGAGAGACGAGTGTGCCCAGAACAAAGAGGATAAGAAC
TTGGCATCAGATATATTCTACGATGGGCAAGACTTTGAAGTGTTCAGTGG
ACCTCGAGTAAACACTAAGAACACTCATGGTACGGGATGCACTCTTGCCG
CTGCTATCACCGCCTTTTTGGCCCTTGGAAAGAACCTTCGAGATGCTGTG
CGTGATGCGAAGCACTACGTGTTCCGATGCATTATTGACGGAATCGAGGT
CGGACATGGAAATGGACCACTCAACCACATGCATTTCATTCCGAAATTCA
GCAAGGAAGAAGCACAGACATGA
back to top