Gvermi6552.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6552.t1
Unique NameGvermi6552.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1315501..1317030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010243074.1
PFAMstRNA-synt_2d
Max annot lvl35493|Streptophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
Evalue6.65e-188
EggNOG OGsCOG0016@1|root,KOG2784@2759|Eukaryota,37R79@33090|Viridiplantae,3GFPA@35493|Streptophyta
EC6.1.1.20
DescriptionPhenylalanine--tRNA ligase alpha subunit
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6552Gvermi6552Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1315501..1317030 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6552.t1.stop1Gvermi6552.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1315501..1315503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6552.t1.CDS1Gvermi6552.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1315501..1317030 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6552.t1.exon1Gvermi6552.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1315501..1317030 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6552.t1.start1Gvermi6552.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1317028..1317030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6552.t1Gvermi6552.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1315501..1317030 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6552.t1 ID=Gvermi6552.t1|Name=Gvermi6552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp
MAGDVTTEEAVLRSVEELGSESDFLESPILAHKLRTDHQTLVDGVLKSLN
AKLAIRMEPVTHNRWEISSEGLSYADSTSPEVAFYNAVREALDAGTMPVS
NELEKKVSKQVMSRGKQQALRRKWVSIDKETKAFKINEGVNVTDDVADAL
RKLRDQDGAPDGVSSALLKDLKSRKLASLKPYKTFKIFAGERLGDARKEQ
ATELTKEMLESGEWKSVAFKPYNFDAEGKQTSGGYLHTLLKVREQFRLIF
LEMGFEEMPTNNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFANIM
DADYMERVRKVHEEGGFGSRGYRYKWSEQEARKNILRTHTTAVSSRMLYL
LAQQGEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGHLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLKKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGIRNIRDLFGHKVDLKAIQ
SNPICRLTF*
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spliced messenger RNA

>Gvermi6552.t1 ID=Gvermi6552.t1|Name=Gvermi6552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_88:1315501..1317030- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGGGACGTAACAACCGAAGAAGCCGTGCTTCGATCGGTGGAAGA
GCTCGGTTCTGAGTCTGACTTTCTGGAATCACCTATACTGGCTCACAAAC
TTAGAACTGATCATCAAACTTTGGTGGATGGGGTTCTCAAGTCACTAAAT
GCCAAGTTGGCCATAAGGATGGAGCCGGTGACTCACAATCGCTGGGAGAT
CTCTTCTGAAGGTTTATCTTACGCAGATTCTACGTCACCAGAAGTGGCTT
TTTACAACGCGGTTAGGGAAGCTCTAGATGCCGGTACGATGCCTGTGTCG
AATGAATTAGAAAAGAAGGTCTCAAAGCAGGTCATGAGCAGGGGAAAGCA
ACAAGCCCTGCGTCGGAAATGGGTTTCGATTGACAAGGAAACCAAGGCGT
TTAAGATCAACGAAGGCGTAAATGTGACTGACGATGTGGCAGATGCACTT
CGAAAGCTCCGCGATCAAGATGGAGCCCCAGACGGAGTTTCTAGCGCTTT
ACTCAAGGACCTGAAGTCCAGGAAGCTCGCGTCGTTAAAACCATACAAAA
CATTCAAGATATTCGCAGGAGAAAGGCTTGGGGATGCTCGGAAAGAACAG
GCAACCGAGCTAACAAAAGAAATGCTCGAATCCGGCGAATGGAAATCTGT
AGCATTCAAACCATATAACTTCGATGCAGAGGGGAAGCAGACAAGTGGCG
GTTACTTGCATACTCTGCTGAAGGTCCGGGAACAATTCCGCCTTATCTTT
CTAGAGATGGGATTCGAAGAGATGCCGACAAACAACTATGTTGAGTCCTC
ATTTTGGAATTTCGACGCCTTGTTCCAGCCTCAGCAGCACCCAGCAAGAG
ATGAGCATGATACTTTCTTCCTATCCGATCCCGAATTCGCAAACATTATG
GATGCGGATTACATGGAAAGGGTACGTAAGGTACATGAAGAAGGTGGATT
TGGATCTAGAGGTTATAGATATAAATGGTCGGAACAAGAGGCTCGAAAGA
ATATTCTCCGGACTCACACCACAGCCGTGTCGAGCCGTATGTTGTATCTT
CTGGCCCAGCAAGGCGAGTTCAAGCCGAAGAAATACTTTTCCATTGACCG
AGTGTTTCGTAACGAAACACTTGACGCCACGCATTTAGCAGAGTTTCATC
AAATTGAAGGTTTAGTCGCAGATCGAAATCTCTCGCTTGGACATTTAAAA
GGAATTATCCATGAGTTCTTCAAAAAGATGGGTATGTCCAAATTACGGTT
CAAACCAACGCATAACCCGTATACCACCCCATCTTTAGAGATTCACTCCT
ACCATGAAGGACTAAAGAAATGGGTAGAAGTTGGAAACTCCGGTGTGTTC
CGACCTGAGATGATCAGGCCGATGGGAATTCCTGAAGACGTAACAGTGAT
TGCATGGGGTCTAAGTCTTGAACGCCCAACCATGATTCGATATGGGATCC
GTAATATTCGTGACCTCTTCGGTCACAAGGTAGATCTAAAAGCAATCCAG
TCGAATCCTATATGTAGACTAACCTTCTGA
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protein sequence of Gvermi6552.t1

>Gvermi6552.t1 ID=Gvermi6552.t1|Name=Gvermi6552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=510bp
MAGDVTTEEAVLRSVEELGSESDFLESPILAHKLRTDHQTLVDGVLKSLN
AKLAIRMEPVTHNRWEISSEGLSYADSTSPEVAFYNAVREALDAGTMPVS
NELEKKVSKQVMSRGKQQALRRKWVSIDKETKAFKINEGVNVTDDVADAL
RKLRDQDGAPDGVSSALLKDLKSRKLASLKPYKTFKIFAGERLGDARKEQ
ATELTKEMLESGEWKSVAFKPYNFDAEGKQTSGGYLHTLLKVREQFRLIF
LEMGFEEMPTNNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFANIM
DADYMERVRKVHEEGGFGSRGYRYKWSEQEARKNILRTHTTAVSSRMLYL
LAQQGEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGHLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLKKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGIRNIRDLFGHKVDLKAIQ
SNPICRLTF*
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mRNA from alignment at ScGOVlb_88:1315501..1317030-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6552.t1 ID=Gvermi6552.t1|Name=Gvermi6552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_88:1315501..1317030- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGGGGACGTAACAACCGAAGAAGCCGTGCTTCGATCGGTGGAAGA
GCTCGGTTCTGAGTCTGACTTTCTGGAATCACCTATACTGGCTCACAAAC
TTAGAACTGATCATCAAACTTTGGTGGATGGGGTTCTCAAGTCACTAAAT
GCCAAGTTGGCCATAAGGATGGAGCCGGTGACTCACAATCGCTGGGAGAT
CTCTTCTGAAGGTTTATCTTACGCAGATTCTACGTCACCAGAAGTGGCTT
TTTACAACGCGGTTAGGGAAGCTCTAGATGCCGGTACGATGCCTGTGTCG
AATGAATTAGAAAAGAAGGTCTCAAAGCAGGTCATGAGCAGGGGAAAGCA
ACAAGCCCTGCGTCGGAAATGGGTTTCGATTGACAAGGAAACCAAGGCGT
TTAAGATCAACGAAGGCGTAAATGTGACTGACGATGTGGCAGATGCACTT
CGAAAGCTCCGCGATCAAGATGGAGCCCCAGACGGAGTTTCTAGCGCTTT
ACTCAAGGACCTGAAGTCCAGGAAGCTCGCGTCGTTAAAACCATACAAAA
CATTCAAGATATTCGCAGGAGAAAGGCTTGGGGATGCTCGGAAAGAACAG
GCAACCGAGCTAACAAAAGAAATGCTCGAATCCGGCGAATGGAAATCTGT
AGCATTCAAACCATATAACTTCGATGCAGAGGGGAAGCAGACAAGTGGCG
GTTACTTGCATACTCTGCTGAAGGTCCGGGAACAATTCCGCCTTATCTTT
CTAGAGATGGGATTCGAAGAGATGCCGACAAACAACTATGTTGAGTCCTC
ATTTTGGAATTTCGACGCCTTGTTCCAGCCTCAGCAGCACCCAGCAAGAG
ATGAGCATGATACTTTCTTCCTATCCGATCCCGAATTCGCAAACATTATG
GATGCGGATTACATGGAAAGGGTACGTAAGGTACATGAAGAAGGTGGATT
TGGATCTAGAGGTTATAGATATAAATGGTCGGAACAAGAGGCTCGAAAGA
ATATTCTCCGGACTCACACCACAGCCGTGTCGAGCCGTATGTTGTATCTT
CTGGCCCAGCAAGGCGAGTTCAAGCCGAAGAAATACTTTTCCATTGACCG
AGTGTTTCGTAACGAAACACTTGACGCCACGCATTTAGCAGAGTTTCATC
AAATTGAAGGTTTAGTCGCAGATCGAAATCTCTCGCTTGGACATTTAAAA
GGAATTATCCATGAGTTCTTCAAAAAGATGGGTATGTCCAAATTACGGTT
CAAACCAACGCATAACCCGTATACCACCCCATCTTTAGAGATTCACTCCT
ACCATGAAGGACTAAAGAAATGGGTAGAAGTTGGAAACTCCGGTGTGTTC
CGACCTGAGATGATCAGGCCGATGGGAATTCCTGAAGACGTAACAGTGAT
TGCATGGGGTCTAAGTCTTGAACGCCCAACCATGATTCGATATGGGATCC
GTAATATTCGTGACCTCTTCGGTCACAAGGTAGATCTAAAAGCAATCCAG
TCGAATCCTATATGTAGACTAACCTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1315501..1317030-

>Gvermi6552.t1 ID=Gvermi6552.t1|Name=Gvermi6552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1530bp|location=Sequence derived from alignment at ScGOVlb_88:1315501..1317030- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGGGGACGTAACAACCGAAGAAGCCGTGCTTCGATCGGTGGAAGA
GCTCGGTTCTGAGTCTGACTTTCTGGAATCACCTATACTGGCTCACAAAC
TTAGAACTGATCATCAAACTTTGGTGGATGGGGTTCTCAAGTCACTAAAT
GCCAAGTTGGCCATAAGGATGGAGCCGGTGACTCACAATCGCTGGGAGAT
CTCTTCTGAAGGTTTATCTTACGCAGATTCTACGTCACCAGAAGTGGCTT
TTTACAACGCGGTTAGGGAAGCTCTAGATGCCGGTACGATGCCTGTGTCG
AATGAATTAGAAAAGAAGGTCTCAAAGCAGGTCATGAGCAGGGGAAAGCA
ACAAGCCCTGCGTCGGAAATGGGTTTCGATTGACAAGGAAACCAAGGCGT
TTAAGATCAACGAAGGCGTAAATGTGACTGACGATGTGGCAGATGCACTT
CGAAAGCTCCGCGATCAAGATGGAGCCCCAGACGGAGTTTCTAGCGCTTT
ACTCAAGGACCTGAAGTCCAGGAAGCTCGCGTCGTTAAAACCATACAAAA
CATTCAAGATATTCGCAGGAGAAAGGCTTGGGGATGCTCGGAAAGAACAG
GCAACCGAGCTAACAAAAGAAATGCTCGAATCCGGCGAATGGAAATCTGT
AGCATTCAAACCATATAACTTCGATGCAGAGGGGAAGCAGACAAGTGGCG
GTTACTTGCATACTCTGCTGAAGGTCCGGGAACAATTCCGCCTTATCTTT
CTAGAGATGGGATTCGAAGAGATGCCGACAAACAACTATGTTGAGTCCTC
ATTTTGGAATTTCGACGCCTTGTTCCAGCCTCAGCAGCACCCAGCAAGAG
ATGAGCATGATACTTTCTTCCTATCCGATCCCGAATTCGCAAACATTATG
GATGCGGATTACATGGAAAGGGTACGTAAGGTACATGAAGAAGGTGGATT
TGGATCTAGAGGTTATAGATATAAATGGTCGGAACAAGAGGCTCGAAAGA
ATATTCTCCGGACTCACACCACAGCCGTGTCGAGCCGTATGTTGTATCTT
CTGGCCCAGCAAGGCGAGTTCAAGCCGAAGAAATACTTTTCCATTGACCG
AGTGTTTCGTAACGAAACACTTGACGCCACGCATTTAGCAGAGTTTCATC
AAATTGAAGGTTTAGTCGCAGATCGAAATCTCTCGCTTGGACATTTAAAA
GGAATTATCCATGAGTTCTTCAAAAAGATGGGTATGTCCAAATTACGGTT
CAAACCAACGCATAACCCGTATACCACCCCATCTTTAGAGATTCACTCCT
ACCATGAAGGACTAAAGAAATGGGTAGAAGTTGGAAACTCCGGTGTGTTC
CGACCTGAGATGATCAGGCCGATGGGAATTCCTGAAGACGTAACAGTGAT
TGCATGGGGTCTAAGTCTTGAACGCCCAACCATGATTCGATATGGGATCC
GTAATATTCGTGACCTCTTCGGTCACAAGGTAGATCTAAAAGCAATCCAG
TCGAATCCTATATGTAGACTAACCTTCTGA
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