Gvermi6500.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6500.t1
Unique NameGvermi6500.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1143836..1144456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog52644.XP_010584418.1
Preferred nameMND1
PFAMsMnd1
Max annot lvl33208|Metazoa
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0022402,GO:0022414,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Evalue8.64e-57
EggNOG OGsCOG5124@1|root,KOG3433@2759|Eukaryota,39R64@33154|Opisthokonta,3BEPV@33208|Metazoa,3CSR6@33213|Bilateria,481CV@7711|Chordata,492X5@7742|Vertebrata,4GS11@8782|Aves
DescriptionMeiotic nuclear
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6500Gvermi6500Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1143836..1144456 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6500.t1.start1Gvermi6500.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1143836..1143838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6500.t1.CDS1Gvermi6500.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1143836..1144456 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6500.t1.exon1Gvermi6500.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1143836..1144456 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6500.t1.stop1Gvermi6500.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1144454..1144456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6500.t1Gvermi6500.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1143836..1144456 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6500.t1 ID=Gvermi6500.t1|Name=Gvermi6500.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=207bp
MAPRKGLSFDEKRERLMDLFTETAEFFTLKELEKIAPKKKGIVSQSVKEV
LQSLVDDNMVNTDKCGVQTVFWCLPSEASQKRRAKLESVKRQIQMKTEQK
SMLTKEIEHLNVGREDTEQRRNTLAQLETLDNKRKDMDRRLEHFAEFDPE
EMERLKERTKVARDCANRWVDNIFNCQSWAVKKYFMDKRDFNKQFGIPEE
LDYIEG*
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spliced messenger RNA

>Gvermi6500.t1 ID=Gvermi6500.t1|Name=Gvermi6500.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_88:1143836..1144456+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCCGGAAAGGGCTTTCATTCGACGAGAAAAGAGAACGGCTCAT
GGACCTATTCACCGAAACAGCCGAGTTCTTCACCTTGAAAGAACTGGAAA
AAATCGCCCCGAAGAAAAAGGGTATAGTCTCGCAGTCCGTCAAGGAAGTT
CTCCAAAGCCTTGTTGACGACAACATGGTCAACACTGATAAATGCGGTGT
GCAAACCGTCTTCTGGTGTCTGCCAAGCGAAGCTTCGCAGAAGCGCCGCG
CTAAGCTCGAAAGTGTCAAGCGCCAGATACAAATGAAGACCGAGCAGAAA
TCCATGCTGACGAAGGAAATTGAGCACCTCAACGTCGGACGTGAGGATAC
CGAGCAAAGGCGAAACACTCTTGCTCAGCTTGAAACGTTGGACAACAAGC
GAAAAGACATGGATCGCCGACTTGAACATTTTGCCGAGTTTGATCCTGAA
GAAATGGAACGCCTCAAGGAACGAACAAAGGTGGCTAGGGATTGTGCAAA
TAGGTGGGTCGATAACATCTTCAACTGCCAGTCTTGGGCAGTTAAAAAGT
ACTTCATGGACAAGCGTGATTTCAACAAGCAGTTTGGAATTCCGGAAGAA
CTTGACTACATTGAGGGTTGA
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protein sequence of Gvermi6500.t1

>Gvermi6500.t1 ID=Gvermi6500.t1|Name=Gvermi6500.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=207bp
MAPRKGLSFDEKRERLMDLFTETAEFFTLKELEKIAPKKKGIVSQSVKEV
LQSLVDDNMVNTDKCGVQTVFWCLPSEASQKRRAKLESVKRQIQMKTEQK
SMLTKEIEHLNVGREDTEQRRNTLAQLETLDNKRKDMDRRLEHFAEFDPE
EMERLKERTKVARDCANRWVDNIFNCQSWAVKKYFMDKRDFNKQFGIPEE
LDYIEG*
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mRNA from alignment at ScGOVlb_88:1143836..1144456+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6500.t1 ID=Gvermi6500.t1|Name=Gvermi6500.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_88:1143836..1144456+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCCGGAAAGGGCTTTCATTCGACGAGAAAAGAGAACGGCTCAT
GGACCTATTCACCGAAACAGCCGAGTTCTTCACCTTGAAAGAACTGGAAA
AAATCGCCCCGAAGAAAAAGGGTATAGTCTCGCAGTCCGTCAAGGAAGTT
CTCCAAAGCCTTGTTGACGACAACATGGTCAACACTGATAAATGCGGTGT
GCAAACCGTCTTCTGGTGTCTGCCAAGCGAAGCTTCGCAGAAGCGCCGCG
CTAAGCTCGAAAGTGTCAAGCGCCAGATACAAATGAAGACCGAGCAGAAA
TCCATGCTGACGAAGGAAATTGAGCACCTCAACGTCGGACGTGAGGATAC
CGAGCAAAGGCGAAACACTCTTGCTCAGCTTGAAACGTTGGACAACAAGC
GAAAAGACATGGATCGCCGACTTGAACATTTTGCCGAGTTTGATCCTGAA
GAAATGGAACGCCTCAAGGAACGAACAAAGGTGGCTAGGGATTGTGCAAA
TAGGTGGGTCGATAACATCTTCAACTGCCAGTCTTGGGCAGTTAAAAAGT
ACTTCATGGACAAGCGTGATTTCAACAAGCAGTTTGGAATTCCGGAAGAA
CTTGACTACATTGAGGGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1143836..1144456+

>Gvermi6500.t1 ID=Gvermi6500.t1|Name=Gvermi6500.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=621bp|location=Sequence derived from alignment at ScGOVlb_88:1143836..1144456+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCCGGAAAGGGCTTTCATTCGACGAGAAAAGAGAACGGCTCAT
GGACCTATTCACCGAAACAGCCGAGTTCTTCACCTTGAAAGAACTGGAAA
AAATCGCCCCGAAGAAAAAGGGTATAGTCTCGCAGTCCGTCAAGGAAGTT
CTCCAAAGCCTTGTTGACGACAACATGGTCAACACTGATAAATGCGGTGT
GCAAACCGTCTTCTGGTGTCTGCCAAGCGAAGCTTCGCAGAAGCGCCGCG
CTAAGCTCGAAAGTGTCAAGCGCCAGATACAAATGAAGACCGAGCAGAAA
TCCATGCTGACGAAGGAAATTGAGCACCTCAACGTCGGACGTGAGGATAC
CGAGCAAAGGCGAAACACTCTTGCTCAGCTTGAAACGTTGGACAACAAGC
GAAAAGACATGGATCGCCGACTTGAACATTTTGCCGAGTTTGATCCTGAA
GAAATGGAACGCCTCAAGGAACGAACAAAGGTGGCTAGGGATTGTGCAAA
TAGGTGGGTCGATAACATCTTCAACTGCCAGTCTTGGGCAGTTAAAAAGT
ACTTCATGGACAAGCGTGATTTCAACAAGCAGTTTGGAATTCCGGAAGAA
CTTGACTACATTGAGGGTTGA
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