Gvermi6496.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6496.t1
Unique NameGvermi6496.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1136257..1137768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6496Gvermi6496Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1136257..1137768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6496.t1.start1Gvermi6496.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1136257..1136259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6496.t1.CDS1Gvermi6496.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1136257..1137768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6496.t1.exon1Gvermi6496.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1136257..1137768 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6496.t1.stop1Gvermi6496.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1137766..1137768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6496.t1Gvermi6496.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1136257..1137768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6496.t1 ID=Gvermi6496.t1|Name=Gvermi6496.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp
MAPRQIYQDERALDKLLDNLLQTGEKENSGVSDRSVHVSEGHLSASNISE
KLAVANGLLQESKICSELPILEENDTNCKTVLDHALTAIVHLCRCCKANA
NLRSEAERSVLVANEEILNLQRLNEKKKEKVTRLETKIATMKKEADDSAK
ENKHIVSNLITECSELKTKCARSAYRVNHLSLEIKKHEREYTQLQQKVHS
LMTNTKRLSIEPQIVAITTNNVSKSPCLSREKSHEREEKEFNELAGSAED
QCMNEVITENRSLRDLLRAVQEELDDLLVSNPSLLEDLKTPAKLSEKKPR
IVEGAEDTTSKSPGPSSSEGMSSTGELTPSVAKVGESAAQSLKASPQRST
LDSDQKDMQDDDSPKQAHEQTAKNEETVDASDGESQTPSEQRRDLSSSKS
DTNRRHNGLEENKASQVLDHEEKTKDFSNITEPEVGTPVTGSPERNGTIL
NNLTPALTSEQMNLPFDMIRESLEHSLDQKFELLRLAFLQVTCRSPNAAK
ECL*
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spliced messenger RNA

>Gvermi6496.t1 ID=Gvermi6496.t1|Name=Gvermi6496.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_88:1136257..1137768+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCAAGACAGATTTATCAAGACGAGAGAGCCCTGGATAAACTACT
CGACAATTTGCTTCAAACTGGTGAAAAAGAAAACAGTGGCGTTTCAGACC
GGTCTGTACATGTATCTGAGGGCCATTTATCAGCCTCGAACATCAGTGAG
AAACTAGCCGTAGCCAACGGGCTTCTGCAAGAGAGTAAAATATGTTCGGA
GCTTCCAATTCTTGAGGAGAATGACACCAATTGCAAGACGGTCCTCGACC
ATGCCTTGACAGCTATTGTTCACCTCTGCAGATGTTGCAAAGCCAATGCC
AACTTACGAAGTGAAGCTGAACGCTCGGTCCTCGTTGCAAACGAAGAGAT
TCTGAACCTGCAGAGATTGAATGAAAAGAAAAAGGAAAAAGTTACGCGGT
TGGAGACAAAGATCGCGACAATGAAGAAAGAAGCAGATGATAGTGCAAAA
GAGAATAAGCACATTGTCTCAAATTTGATCACGGAATGTTCCGAGCTCAA
AACAAAATGTGCCAGGTCAGCATATCGTGTAAACCATTTATCTTTGGAGA
TCAAGAAACACGAACGAGAATATACTCAATTGCAGCAAAAGGTGCATTCT
CTGATGACCAACACAAAGCGATTGAGCATTGAACCGCAAATAGTTGCAAT
CACAACGAACAATGTTTCAAAATCCCCTTGTTTAAGCCGAGAAAAGTCTC
ACGAGAGAGAGGAAAAGGAGTTCAATGAACTAGCGGGCTCAGCGGAGGAC
CAATGTATGAATGAAGTGATTACTGAAAACAGATCTCTTCGAGATCTCCT
TCGAGCGGTACAAGAAGAGCTGGATGATTTGCTAGTCTCCAATCCAAGCT
TGTTAGAAGACTTGAAAACGCCTGCCAAGCTATCGGAAAAAAAACCTCGC
ATTGTAGAAGGGGCAGAGGATACGACGAGCAAATCACCCGGTCCATCAAG
TTCAGAAGGCATGTCTTCCACGGGGGAGTTAACTCCTTCAGTTGCGAAGG
TGGGCGAATCCGCTGCCCAAAGCCTCAAAGCTTCACCACAGCGAAGCACA
CTAGACTCAGACCAAAAAGATATGCAGGACGATGATAGCCCTAAGCAAGC
ACATGAACAAACTGCGAAAAATGAAGAAACCGTCGATGCTTCTGATGGGG
AATCGCAAACTCCATCCGAGCAAAGACGCGATCTATCATCATCAAAGTCA
GATACAAATAGGAGACATAATGGATTGGAGGAAAATAAAGCCTCTCAGGT
ATTGGATCATGAAGAGAAAACAAAAGACTTCTCCAACATAACAGAGCCCG
AAGTGGGTACTCCAGTCACTGGCAGTCCTGAGCGAAATGGAACAATTCTC
AACAATTTGACTCCGGCTTTGACTTCAGAACAAATGAATCTACCGTTTGA
CATGATCCGCGAAAGCCTTGAACACAGCTTGGACCAAAAGTTTGAGCTTT
TACGCCTTGCATTTCTGCAAGTCACATGCAGGAGCCCAAACGCGGCAAAG
GAGTGTCTTTAA
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protein sequence of Gvermi6496.t1

>Gvermi6496.t1 ID=Gvermi6496.t1|Name=Gvermi6496.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MAPRQIYQDERALDKLLDNLLQTGEKENSGVSDRSVHVSEGHLSASNISE
KLAVANGLLQESKICSELPILEENDTNCKTVLDHALTAIVHLCRCCKANA
NLRSEAERSVLVANEEILNLQRLNEKKKEKVTRLETKIATMKKEADDSAK
ENKHIVSNLITECSELKTKCARSAYRVNHLSLEIKKHEREYTQLQQKVHS
LMTNTKRLSIEPQIVAITTNNVSKSPCLSREKSHEREEKEFNELAGSAED
QCMNEVITENRSLRDLLRAVQEELDDLLVSNPSLLEDLKTPAKLSEKKPR
IVEGAEDTTSKSPGPSSSEGMSSTGELTPSVAKVGESAAQSLKASPQRST
LDSDQKDMQDDDSPKQAHEQTAKNEETVDASDGESQTPSEQRRDLSSSKS
DTNRRHNGLEENKASQVLDHEEKTKDFSNITEPEVGTPVTGSPERNGTIL
NNLTPALTSEQMNLPFDMIRESLEHSLDQKFELLRLAFLQVTCRSPNAAK
ECL*
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mRNA from alignment at ScGOVlb_88:1136257..1137768+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6496.t1 ID=Gvermi6496.t1|Name=Gvermi6496.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_88:1136257..1137768+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCAAGACAGATTTATCAAGACGAGAGAGCCCTGGATAAACTACT
CGACAATTTGCTTCAAACTGGTGAAAAAGAAAACAGTGGCGTTTCAGACC
GGTCTGTACATGTATCTGAGGGCCATTTATCAGCCTCGAACATCAGTGAG
AAACTAGCCGTAGCCAACGGGCTTCTGCAAGAGAGTAAAATATGTTCGGA
GCTTCCAATTCTTGAGGAGAATGACACCAATTGCAAGACGGTCCTCGACC
ATGCCTTGACAGCTATTGTTCACCTCTGCAGATGTTGCAAAGCCAATGCC
AACTTACGAAGTGAAGCTGAACGCTCGGTCCTCGTTGCAAACGAAGAGAT
TCTGAACCTGCAGAGATTGAATGAAAAGAAAAAGGAAAAAGTTACGCGGT
TGGAGACAAAGATCGCGACAATGAAGAAAGAAGCAGATGATAGTGCAAAA
GAGAATAAGCACATTGTCTCAAATTTGATCACGGAATGTTCCGAGCTCAA
AACAAAATGTGCCAGGTCAGCATATCGTGTAAACCATTTATCTTTGGAGA
TCAAGAAACACGAACGAGAATATACTCAATTGCAGCAAAAGGTGCATTCT
CTGATGACCAACACAAAGCGATTGAGCATTGAACCGCAAATAGTTGCAAT
CACAACGAACAATGTTTCAAAATCCCCTTGTTTAAGCCGAGAAAAGTCTC
ACGAGAGAGAGGAAAAGGAGTTCAATGAACTAGCGGGCTCAGCGGAGGAC
CAATGTATGAATGAAGTGATTACTGAAAACAGATCTCTTCGAGATCTCCT
TCGAGCGGTACAAGAAGAGCTGGATGATTTGCTAGTCTCCAATCCAAGCT
TGTTAGAAGACTTGAAAACGCCTGCCAAGCTATCGGAAAAAAAACCTCGC
ATTGTAGAAGGGGCAGAGGATACGACGAGCAAATCACCCGGTCCATCAAG
TTCAGAAGGCATGTCTTCCACGGGGGAGTTAACTCCTTCAGTTGCGAAGG
TGGGCGAATCCGCTGCCCAAAGCCTCAAAGCTTCACCACAGCGAAGCACA
CTAGACTCAGACCAAAAAGATATGCAGGACGATGATAGCCCTAAGCAAGC
ACATGAACAAACTGCGAAAAATGAAGAAACCGTCGATGCTTCTGATGGGG
AATCGCAAACTCCATCCGAGCAAAGACGCGATCTATCATCATCAAAGTCA
GATACAAATAGGAGACATAATGGATTGGAGGAAAATAAAGCCTCTCAGGT
ATTGGATCATGAAGAGAAAACAAAAGACTTCTCCAACATAACAGAGCCCG
AAGTGGGTACTCCAGTCACTGGCAGTCCTGAGCGAAATGGAACAATTCTC
AACAATTTGACTCCGGCTTTGACTTCAGAACAAATGAATCTACCGTTTGA
CATGATCCGCGAAAGCCTTGAACACAGCTTGGACCAAAAGTTTGAGCTTT
TACGCCTTGCATTTCTGCAAGTCACATGCAGGAGCCCAAACGCGGCAAAG
GAGTGTCTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1136257..1137768+

>Gvermi6496.t1 ID=Gvermi6496.t1|Name=Gvermi6496.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1512bp|location=Sequence derived from alignment at ScGOVlb_88:1136257..1137768+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCAAGACAGATTTATCAAGACGAGAGAGCCCTGGATAAACTACT
CGACAATTTGCTTCAAACTGGTGAAAAAGAAAACAGTGGCGTTTCAGACC
GGTCTGTACATGTATCTGAGGGCCATTTATCAGCCTCGAACATCAGTGAG
AAACTAGCCGTAGCCAACGGGCTTCTGCAAGAGAGTAAAATATGTTCGGA
GCTTCCAATTCTTGAGGAGAATGACACCAATTGCAAGACGGTCCTCGACC
ATGCCTTGACAGCTATTGTTCACCTCTGCAGATGTTGCAAAGCCAATGCC
AACTTACGAAGTGAAGCTGAACGCTCGGTCCTCGTTGCAAACGAAGAGAT
TCTGAACCTGCAGAGATTGAATGAAAAGAAAAAGGAAAAAGTTACGCGGT
TGGAGACAAAGATCGCGACAATGAAGAAAGAAGCAGATGATAGTGCAAAA
GAGAATAAGCACATTGTCTCAAATTTGATCACGGAATGTTCCGAGCTCAA
AACAAAATGTGCCAGGTCAGCATATCGTGTAAACCATTTATCTTTGGAGA
TCAAGAAACACGAACGAGAATATACTCAATTGCAGCAAAAGGTGCATTCT
CTGATGACCAACACAAAGCGATTGAGCATTGAACCGCAAATAGTTGCAAT
CACAACGAACAATGTTTCAAAATCCCCTTGTTTAAGCCGAGAAAAGTCTC
ACGAGAGAGAGGAAAAGGAGTTCAATGAACTAGCGGGCTCAGCGGAGGAC
CAATGTATGAATGAAGTGATTACTGAAAACAGATCTCTTCGAGATCTCCT
TCGAGCGGTACAAGAAGAGCTGGATGATTTGCTAGTCTCCAATCCAAGCT
TGTTAGAAGACTTGAAAACGCCTGCCAAGCTATCGGAAAAAAAACCTCGC
ATTGTAGAAGGGGCAGAGGATACGACGAGCAAATCACCCGGTCCATCAAG
TTCAGAAGGCATGTCTTCCACGGGGGAGTTAACTCCTTCAGTTGCGAAGG
TGGGCGAATCCGCTGCCCAAAGCCTCAAAGCTTCACCACAGCGAAGCACA
CTAGACTCAGACCAAAAAGATATGCAGGACGATGATAGCCCTAAGCAAGC
ACATGAACAAACTGCGAAAAATGAAGAAACCGTCGATGCTTCTGATGGGG
AATCGCAAACTCCATCCGAGCAAAGACGCGATCTATCATCATCAAAGTCA
GATACAAATAGGAGACATAATGGATTGGAGGAAAATAAAGCCTCTCAGGT
ATTGGATCATGAAGAGAAAACAAAAGACTTCTCCAACATAACAGAGCCCG
AAGTGGGTACTCCAGTCACTGGCAGTCCTGAGCGAAATGGAACAATTCTC
AACAATTTGACTCCGGCTTTGACTTCAGAACAAATGAATCTACCGTTTGA
CATGATCCGCGAAAGCCTTGAACACAGCTTGGACCAAAAGTTTGAGCTTT
TACGCCTTGCATTTCTGCAAGTCACATGCAGGAGCCCAAACGCGGCAAAG
GAGTGTCTTTAA
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