Gvermi6458.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6458.t1
Unique NameGvermi6458.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length793
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:812256..814634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391037.Sare_1072
PFAMsBig_3_5,Flg_new,Pkinase,RCC1
Max annot lvl201174|Actinobacteria
Evalue1.33e-20
EggNOG OGsCOG5184@1|root,COG5184@2|Bacteria,2IG31@201174|Actinobacteria,4DEHQ@85008|Micromonosporales
DescriptionPFAM regulator of chromosome condensation, RCC1
COG categoryDZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6458Gvermi6458Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 812256..814634 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6458.t1.start1Gvermi6458.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 812256..812258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6458.t1.CDS1Gvermi6458.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 812256..814634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6458.t1.exon1Gvermi6458.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 812256..814634 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6458.t1.stop1Gvermi6458.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 814632..814634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6458.t1Gvermi6458.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 812256..814634 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6458.t1 ID=Gvermi6458.t1|Name=Gvermi6458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=793bp
MQAIQPQPELTALQLFCPSPSLYSLPCGPVTLPHPIRAFAPGFNFALLVD
SFYRLHSWGFNSEFQRLGRPLPAQHTQLHPAPVPIDGAPPIVDCASGANH
SIVLTHRGRVYSFGADDFGQLGRFTSDPRPAPVPIPARIARVYCGWNFCA
ALAEDGRSLFTWGCGKDGQLGHGYFPQRAYPTRVPLQGLALCVALGHSHI
VVLLQTTPDTRRVLTWGSDGLASIRHDLPRSVPRLPQADVTIVSAGKHFS
IFLTQQGLVFAAGHGDEGQLGVEDTQGRNNACVIPSLLGHHIVNIAASHS
FAIALSSEGSFFVWGSGILKPRKLRDGTLCFPSSAPYSFVVQMKAFASTA
MLAAPISFPPNAALRPFRAFLKSFCEGQQLDALRTTRVYYCCSCPQRTSA
PCNQCCVRAYGPLLSTASSLIKSRLQTQNHLDWSMYDHDCVSRSVKLLCS
GVVDEDVSLETLQEMSALLRRYQSNAFERIIADVLGSRLLRRATAGIDYW
DAYDGTPERLDERRVRAMFGRIQHSDSVVQTQLQFSDDSALEFGVDPLLF
SVQSPAFAEFLQVHFNEAANSVPNMWQIGVWGNMICSEAKSLLEGWFGGS
DLSIPGDEDHGVAIPMYTDVIRVAACLKMSVLMLSAEQQLMGHVNPSMTL
NNWWMALIVSNRTGCKHAYHKLLFVADSVCARIMLRRATLRVEALEKSLS
ATDLVFNRAETERRALQTFRRSRIYCDGLMSVYDVARNLEDACKMNGYLI
GEGNVGLDGRVWRTAEDEARLRQQAAEARSEGRRRLSRCSIA*
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spliced messenger RNA

>Gvermi6458.t1 ID=Gvermi6458.t1|Name=Gvermi6458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2379bp|location=Sequence derived from alignment at ScGOVlb_88:812256..814634+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCGATTCAACCCCAACCTGAGCTCACTGCCCTGCAGCTCTTTTG
TCCTTCTCCGTCGCTGTACAGCCTTCCATGCGGACCAGTCACTCTTCCGC
ACCCAATCCGCGCCTTTGCGCCCGGCTTCAATTTCGCCCTCCTGGTCGAC
AGCTTCTACCGCCTGCACTCATGGGGCTTCAACTCCGAGTTTCAGCGCCT
CGGCCGCCCGCTGCCCGCCCAACACACCCAGCTGCACCCCGCGCCCGTGC
CAATCGACGGAGCGCCGCCAATCGTCGACTGCGCCTCGGGCGCCAATCAC
TCCATTGTGCTCACACACCGCGGCCGCGTCTATTCCTTTGGCGCAGATGA
CTTTGGCCAGCTGGGCCGCTTCACTTCCGACCCGCGCCCGGCGCCCGTGC
CCATACCGGCCCGCATCGCGCGCGTGTACTGCGGCTGGAACTTTTGCGCC
GCCCTTGCCGAGGACGGGCGCTCGCTTTTCACCTGGGGCTGTGGCAAGGA
CGGCCAACTGGGCCACGGCTACTTTCCACAGCGCGCGTACCCCACCAGAG
TGCCTCTGCAAGGCTTGGCGTTGTGCGTGGCGCTTGGACACTCCCACATC
GTCGTGCTTTTGCAAACAACGCCCGACACCAGACGAGTGCTCACCTGGGG
ATCTGATGGGCTCGCATCCATTCGTCACGATTTGCCACGCAGCGTCCCGC
GACTTCCGCAAGCCGATGTCACCATCGTGTCGGCCGGCAAGCACTTTTCA
ATCTTTTTGACACAGCAAGGGCTCGTATTCGCAGCAGGGCACGGAGACGA
GGGCCAGCTGGGAGTTGAGGACACGCAAGGTCGAAACAATGCTTGTGTGA
TCCCTTCACTTCTGGGGCACCACATTGTGAACATTGCAGCGTCTCACTCC
TTCGCCATTGCCCTGTCCAGTGAGGGGTCGTTCTTTGTTTGGGGAAGCGG
CATTCTGAAGCCCAGAAAATTGCGAGATGGAACTCTGTGCTTCCCATCCT
CTGCCCCGTATTCGTTCGTTGTTCAGATGAAGGCGTTTGCATCTACAGCG
ATGCTTGCAGCACCAATTTCTTTCCCACCAAATGCCGCACTGCGACCATT
CCGGGCTTTCCTCAAATCTTTCTGCGAGGGACAACAACTGGACGCGTTGA
GAACCACTCGAGTGTACTACTGCTGTTCATGCCCGCAGAGAACCAGTGCG
CCGTGTAATCAATGCTGTGTCAGAGCCTACGGTCCACTTTTGAGCACCGC
TTCCAGTCTGATTAAGTCAAGACTGCAAACCCAGAACCATCTGGATTGGT
CCATGTACGACCACGATTGTGTGAGTAGGAGCGTCAAATTACTGTGCAGC
GGCGTCGTTGACGAGGACGTAAGCTTAGAAACGCTACAGGAAATGTCCGC
GCTGTTGAGACGGTACCAATCCAATGCATTTGAAAGAATAATAGCAGACG
TTCTGGGCTCAAGACTGCTTCGCCGTGCGACCGCGGGCATAGATTATTGG
GACGCTTATGATGGTACCCCGGAACGACTCGATGAGCGTCGGGTGCGCGC
CATGTTTGGACGCATTCAACACTCGGACAGTGTTGTTCAAACTCAGTTAC
AGTTCTCCGATGACTCTGCACTTGAATTTGGTGTTGATCCTCTCCTCTTC
TCCGTGCAATCTCCAGCTTTTGCAGAGTTTCTCCAAGTGCATTTCAATGA
AGCGGCGAACAGTGTTCCCAACATGTGGCAGATTGGTGTATGGGGGAATA
TGATTTGTTCCGAGGCGAAAAGCTTGTTAGAAGGGTGGTTTGGAGGTTCT
GACTTGAGCATACCTGGCGATGAAGATCATGGCGTGGCTATTCCTATGTA
CACCGATGTGATTCGCGTGGCTGCATGTCTCAAAATGAGTGTGCTGATGT
TGTCTGCTGAGCAACAACTTATGGGACACGTCAATCCATCCATGACCTTG
AATAACTGGTGGATGGCGCTTATTGTCTCCAACAGAACGGGATGTAAACA
TGCGTATCACAAGCTTTTATTCGTAGCAGATTCAGTGTGCGCTAGGATTA
TGTTAAGACGTGCAACGTTAAGGGTCGAAGCACTTGAGAAGTCCTTATCA
GCTACTGACCTCGTGTTTAATCGAGCGGAAACTGAGAGACGGGCTCTGCA
GACATTCAGAAGATCTAGAATATACTGTGACGGACTCATGAGTGTTTATG
ATGTGGCCCGCAACCTTGAGGATGCTTGTAAAATGAACGGGTACCTAATT
GGAGAAGGGAACGTTGGTTTGGATGGGCGAGTGTGGAGGACAGCCGAGGA
TGAAGCAAGACTACGACAGCAAGCTGCAGAGGCCAGGTCGGAAGGACGGA
GACGTTTGAGTCGATGTTCAATAGCCTAG
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protein sequence of Gvermi6458.t1

>Gvermi6458.t1 ID=Gvermi6458.t1|Name=Gvermi6458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=793bp
MQAIQPQPELTALQLFCPSPSLYSLPCGPVTLPHPIRAFAPGFNFALLVD
SFYRLHSWGFNSEFQRLGRPLPAQHTQLHPAPVPIDGAPPIVDCASGANH
SIVLTHRGRVYSFGADDFGQLGRFTSDPRPAPVPIPARIARVYCGWNFCA
ALAEDGRSLFTWGCGKDGQLGHGYFPQRAYPTRVPLQGLALCVALGHSHI
VVLLQTTPDTRRVLTWGSDGLASIRHDLPRSVPRLPQADVTIVSAGKHFS
IFLTQQGLVFAAGHGDEGQLGVEDTQGRNNACVIPSLLGHHIVNIAASHS
FAIALSSEGSFFVWGSGILKPRKLRDGTLCFPSSAPYSFVVQMKAFASTA
MLAAPISFPPNAALRPFRAFLKSFCEGQQLDALRTTRVYYCCSCPQRTSA
PCNQCCVRAYGPLLSTASSLIKSRLQTQNHLDWSMYDHDCVSRSVKLLCS
GVVDEDVSLETLQEMSALLRRYQSNAFERIIADVLGSRLLRRATAGIDYW
DAYDGTPERLDERRVRAMFGRIQHSDSVVQTQLQFSDDSALEFGVDPLLF
SVQSPAFAEFLQVHFNEAANSVPNMWQIGVWGNMICSEAKSLLEGWFGGS
DLSIPGDEDHGVAIPMYTDVIRVAACLKMSVLMLSAEQQLMGHVNPSMTL
NNWWMALIVSNRTGCKHAYHKLLFVADSVCARIMLRRATLRVEALEKSLS
ATDLVFNRAETERRALQTFRRSRIYCDGLMSVYDVARNLEDACKMNGYLI
GEGNVGLDGRVWRTAEDEARLRQQAAEARSEGRRRLSRCSIA*
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mRNA from alignment at ScGOVlb_88:812256..814634+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6458.t1 ID=Gvermi6458.t1|Name=Gvermi6458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2379bp|location=Sequence derived from alignment at ScGOVlb_88:812256..814634+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGCGATTCAACCCCAACCTGAGCTCACTGCCCTGCAGCTCTTTTG
TCCTTCTCCGTCGCTGTACAGCCTTCCATGCGGACCAGTCACTCTTCCGC
ACCCAATCCGCGCCTTTGCGCCCGGCTTCAATTTCGCCCTCCTGGTCGAC
AGCTTCTACCGCCTGCACTCATGGGGCTTCAACTCCGAGTTTCAGCGCCT
CGGCCGCCCGCTGCCCGCCCAACACACCCAGCTGCACCCCGCGCCCGTGC
CAATCGACGGAGCGCCGCCAATCGTCGACTGCGCCTCGGGCGCCAATCAC
TCCATTGTGCTCACACACCGCGGCCGCGTCTATTCCTTTGGCGCAGATGA
CTTTGGCCAGCTGGGCCGCTTCACTTCCGACCCGCGCCCGGCGCCCGTGC
CCATACCGGCCCGCATCGCGCGCGTGTACTGCGGCTGGAACTTTTGCGCC
GCCCTTGCCGAGGACGGGCGCTCGCTTTTCACCTGGGGCTGTGGCAAGGA
CGGCCAACTGGGCCACGGCTACTTTCCACAGCGCGCGTACCCCACCAGAG
TGCCTCTGCAAGGCTTGGCGTTGTGCGTGGCGCTTGGACACTCCCACATC
GTCGTGCTTTTGCAAACAACGCCCGACACCAGACGAGTGCTCACCTGGGG
ATCTGATGGGCTCGCATCCATTCGTCACGATTTGCCACGCAGCGTCCCGC
GACTTCCGCAAGCCGATGTCACCATCGTGTCGGCCGGCAAGCACTTTTCA
ATCTTTTTGACACAGCAAGGGCTCGTATTCGCAGCAGGGCACGGAGACGA
GGGCCAGCTGGGAGTTGAGGACACGCAAGGTCGAAACAATGCTTGTGTGA
TCCCTTCACTTCTGGGGCACCACATTGTGAACATTGCAGCGTCTCACTCC
TTCGCCATTGCCCTGTCCAGTGAGGGGTCGTTCTTTGTTTGGGGAAGCGG
CATTCTGAAGCCCAGAAAATTGCGAGATGGAACTCTGTGCTTCCCATCCT
CTGCCCCGTATTCGTTCGTTGTTCAGATGAAGGCGTTTGCATCTACAGCG
ATGCTTGCAGCACCAATTTCTTTCCCACCAAATGCCGCACTGCGACCATT
CCGGGCTTTCCTCAAATCTTTCTGCGAGGGACAACAACTGGACGCGTTGA
GAACCACTCGAGTGTACTACTGCTGTTCATGCCCGCAGAGAACCAGTGCG
CCGTGTAATCAATGCTGTGTCAGAGCCTACGGTCCACTTTTGAGCACCGC
TTCCAGTCTGATTAAGTCAAGACTGCAAACCCAGAACCATCTGGATTGGT
CCATGTACGACCACGATTGTGTGAGTAGGAGCGTCAAATTACTGTGCAGC
GGCGTCGTTGACGAGGACGTAAGCTTAGAAACGCTACAGGAAATGTCCGC
GCTGTTGAGACGGTACCAATCCAATGCATTTGAAAGAATAATAGCAGACG
TTCTGGGCTCAAGACTGCTTCGCCGTGCGACCGCGGGCATAGATTATTGG
GACGCTTATGATGGTACCCCGGAACGACTCGATGAGCGTCGGGTGCGCGC
CATGTTTGGACGCATTCAACACTCGGACAGTGTTGTTCAAACTCAGTTAC
AGTTCTCCGATGACTCTGCACTTGAATTTGGTGTTGATCCTCTCCTCTTC
TCCGTGCAATCTCCAGCTTTTGCAGAGTTTCTCCAAGTGCATTTCAATGA
AGCGGCGAACAGTGTTCCCAACATGTGGCAGATTGGTGTATGGGGGAATA
TGATTTGTTCCGAGGCGAAAAGCTTGTTAGAAGGGTGGTTTGGAGGTTCT
GACTTGAGCATACCTGGCGATGAAGATCATGGCGTGGCTATTCCTATGTA
CACCGATGTGATTCGCGTGGCTGCATGTCTCAAAATGAGTGTGCTGATGT
TGTCTGCTGAGCAACAACTTATGGGACACGTCAATCCATCCATGACCTTG
AATAACTGGTGGATGGCGCTTATTGTCTCCAACAGAACGGGATGTAAACA
TGCGTATCACAAGCTTTTATTCGTAGCAGATTCAGTGTGCGCTAGGATTA
TGTTAAGACGTGCAACGTTAAGGGTCGAAGCACTTGAGAAGTCCTTATCA
GCTACTGACCTCGTGTTTAATCGAGCGGAAACTGAGAGACGGGCTCTGCA
GACATTCAGAAGATCTAGAATATACTGTGACGGACTCATGAGTGTTTATG
ATGTGGCCCGCAACCTTGAGGATGCTTGTAAAATGAACGGGTACCTAATT
GGAGAAGGGAACGTTGGTTTGGATGGGCGAGTGTGGAGGACAGCCGAGGA
TGAAGCAAGACTACGACAGCAAGCTGCAGAGGCCAGGTCGGAAGGACGGA
GACGTTTGAGTCGATGTTCAATAGCCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:812256..814634+

>Gvermi6458.t1 ID=Gvermi6458.t1|Name=Gvermi6458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2379bp|location=Sequence derived from alignment at ScGOVlb_88:812256..814634+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGCGATTCAACCCCAACCTGAGCTCACTGCCCTGCAGCTCTTTTG
TCCTTCTCCGTCGCTGTACAGCCTTCCATGCGGACCAGTCACTCTTCCGC
ACCCAATCCGCGCCTTTGCGCCCGGCTTCAATTTCGCCCTCCTGGTCGAC
AGCTTCTACCGCCTGCACTCATGGGGCTTCAACTCCGAGTTTCAGCGCCT
CGGCCGCCCGCTGCCCGCCCAACACACCCAGCTGCACCCCGCGCCCGTGC
CAATCGACGGAGCGCCGCCAATCGTCGACTGCGCCTCGGGCGCCAATCAC
TCCATTGTGCTCACACACCGCGGCCGCGTCTATTCCTTTGGCGCAGATGA
CTTTGGCCAGCTGGGCCGCTTCACTTCCGACCCGCGCCCGGCGCCCGTGC
CCATACCGGCCCGCATCGCGCGCGTGTACTGCGGCTGGAACTTTTGCGCC
GCCCTTGCCGAGGACGGGCGCTCGCTTTTCACCTGGGGCTGTGGCAAGGA
CGGCCAACTGGGCCACGGCTACTTTCCACAGCGCGCGTACCCCACCAGAG
TGCCTCTGCAAGGCTTGGCGTTGTGCGTGGCGCTTGGACACTCCCACATC
GTCGTGCTTTTGCAAACAACGCCCGACACCAGACGAGTGCTCACCTGGGG
ATCTGATGGGCTCGCATCCATTCGTCACGATTTGCCACGCAGCGTCCCGC
GACTTCCGCAAGCCGATGTCACCATCGTGTCGGCCGGCAAGCACTTTTCA
ATCTTTTTGACACAGCAAGGGCTCGTATTCGCAGCAGGGCACGGAGACGA
GGGCCAGCTGGGAGTTGAGGACACGCAAGGTCGAAACAATGCTTGTGTGA
TCCCTTCACTTCTGGGGCACCACATTGTGAACATTGCAGCGTCTCACTCC
TTCGCCATTGCCCTGTCCAGTGAGGGGTCGTTCTTTGTTTGGGGAAGCGG
CATTCTGAAGCCCAGAAAATTGCGAGATGGAACTCTGTGCTTCCCATCCT
CTGCCCCGTATTCGTTCGTTGTTCAGATGAAGGCGTTTGCATCTACAGCG
ATGCTTGCAGCACCAATTTCTTTCCCACCAAATGCCGCACTGCGACCATT
CCGGGCTTTCCTCAAATCTTTCTGCGAGGGACAACAACTGGACGCGTTGA
GAACCACTCGAGTGTACTACTGCTGTTCATGCCCGCAGAGAACCAGTGCG
CCGTGTAATCAATGCTGTGTCAGAGCCTACGGTCCACTTTTGAGCACCGC
TTCCAGTCTGATTAAGTCAAGACTGCAAACCCAGAACCATCTGGATTGGT
CCATGTACGACCACGATTGTGTGAGTAGGAGCGTCAAATTACTGTGCAGC
GGCGTCGTTGACGAGGACGTAAGCTTAGAAACGCTACAGGAAATGTCCGC
GCTGTTGAGACGGTACCAATCCAATGCATTTGAAAGAATAATAGCAGACG
TTCTGGGCTCAAGACTGCTTCGCCGTGCGACCGCGGGCATAGATTATTGG
GACGCTTATGATGGTACCCCGGAACGACTCGATGAGCGTCGGGTGCGCGC
CATGTTTGGACGCATTCAACACTCGGACAGTGTTGTTCAAACTCAGTTAC
AGTTCTCCGATGACTCTGCACTTGAATTTGGTGTTGATCCTCTCCTCTTC
TCCGTGCAATCTCCAGCTTTTGCAGAGTTTCTCCAAGTGCATTTCAATGA
AGCGGCGAACAGTGTTCCCAACATGTGGCAGATTGGTGTATGGGGGAATA
TGATTTGTTCCGAGGCGAAAAGCTTGTTAGAAGGGTGGTTTGGAGGTTCT
GACTTGAGCATACCTGGCGATGAAGATCATGGCGTGGCTATTCCTATGTA
CACCGATGTGATTCGCGTGGCTGCATGTCTCAAAATGAGTGTGCTGATGT
TGTCTGCTGAGCAACAACTTATGGGACACGTCAATCCATCCATGACCTTG
AATAACTGGTGGATGGCGCTTATTGTCTCCAACAGAACGGGATGTAAACA
TGCGTATCACAAGCTTTTATTCGTAGCAGATTCAGTGTGCGCTAGGATTA
TGTTAAGACGTGCAACGTTAAGGGTCGAAGCACTTGAGAAGTCCTTATCA
GCTACTGACCTCGTGTTTAATCGAGCGGAAACTGAGAGACGGGCTCTGCA
GACATTCAGAAGATCTAGAATATACTGTGACGGACTCATGAGTGTTTATG
ATGTGGCCCGCAACCTTGAGGATGCTTGTAAAATGAACGGGTACCTAATT
GGAGAAGGGAACGTTGGTTTGGATGGGCGAGTGTGGAGGACAGCCGAGGA
TGAAGCAAGACTACGACAGCAAGCTGCAGAGGCCAGGTCGGAAGGACGGA
GACGTTTGAGTCGATGTTCAATAGCCTAG
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