Gvermi6442.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6442.t1
Unique NameGvermi6442.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:771293..772084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS209CT
Preferred nameTIMM22
PFAMsTim17
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01094,ko:K17790
KEGG TC3.A.8.1
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042721,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990542
Evalue2.78e-43
EggNOG OGsCOG5596@1|root,KOG3225@2759|Eukaryota
EC3.1.3.27
DescriptionMitochondrial import inner membrane translocase subunit
COG categoryO
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6442Gvermi6442Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 771293..772084 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6442.t1.stop1Gvermi6442.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 771293..771295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6442.t1.CDS1Gvermi6442.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 771293..772084 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6442.t1.exon1Gvermi6442.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 771293..772084 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6442.t1.start1Gvermi6442.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 772082..772084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6442.t1Gvermi6442.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 771293..772084 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6442.t1 ID=Gvermi6442.t1|Name=Gvermi6442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=264bp
LVQGIIPIRRRVHPNRPRSIADDGDARRFGIDFNAQSPRRQTFHSLSSQC
LSAWKELSKSIMSEPFSSSDENFTPTHELNQPPHLSQNPIFHDNLNPLQR
AMMWPPVSPNQPPIWLRRMNSASETCVFKAGISAFAGGGLGVLFGLFFGG
YSNAVDKAVETEGPASLKLRVGFKEAARSMRSYAKNFAMFGASFSAAECT
VEKIRARHDIWNSVIGGCAAGAFMSASPSDKMTPRARAMQMAFGCASVAA
FSAAIDYYMEYMD*
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spliced messenger RNA

>Gvermi6442.t1 ID=Gvermi6442.t1|Name=Gvermi6442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=792bp|location=Sequence derived from alignment at ScGOVlb_88:771293..772084- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGTGCAAGGAATCATCCCTATTCGCCGACGTGTGCATCCGAACCGCCC
ACGGAGCATCGCGGACGACGGCGACGCTCGCCGCTTCGGGATCGACTTCA
ATGCCCAGTCCCCAAGGCGTCAAACGTTCCACTCATTATCTTCTCAGTGC
TTGTCTGCTTGGAAGGAACTGTCAAAATCTATCATGTCAGAGCCATTTTC
TTCCTCGGATGAGAATTTCACCCCAACGCATGAGCTGAACCAACCTCCCC
ATCTGTCGCAGAATCCAATTTTTCACGACAATCTGAATCCATTGCAGCGA
GCGATGATGTGGCCGCCCGTTAGTCCAAATCAACCTCCTATCTGGCTTCG
AAGAATGAATAGTGCCTCAGAAACGTGCGTCTTCAAGGCTGGTATATCTG
CGTTTGCGGGTGGAGGACTCGGAGTTCTTTTTGGTTTATTTTTTGGAGGC
TATTCAAATGCGGTCGACAAAGCAGTTGAGACAGAAGGTCCAGCCTCTCT
CAAGCTTCGCGTCGGGTTTAAAGAAGCCGCACGATCTATGCGTTCTTATG
CGAAGAATTTTGCAATGTTTGGCGCCAGTTTTTCAGCGGCTGAGTGCACG
GTTGAAAAGATAAGAGCCAGACACGATATCTGGAACTCAGTTATTGGTGG
TTGTGCTGCGGGTGCTTTCATGTCGGCTTCACCCTCTGACAAAATGACTC
CACGAGCAAGAGCTATGCAAATGGCTTTTGGATGCGCTAGCGTTGCCGCA
TTCAGTGCTGCTATCGACTATTACATGGAGTACATGGACTAA
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protein sequence of Gvermi6442.t1

>Gvermi6442.t1 ID=Gvermi6442.t1|Name=Gvermi6442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=264bp
LVQGIIPIRRRVHPNRPRSIADDGDARRFGIDFNAQSPRRQTFHSLSSQC
LSAWKELSKSIMSEPFSSSDENFTPTHELNQPPHLSQNPIFHDNLNPLQR
AMMWPPVSPNQPPIWLRRMNSASETCVFKAGISAFAGGGLGVLFGLFFGG
YSNAVDKAVETEGPASLKLRVGFKEAARSMRSYAKNFAMFGASFSAAECT
VEKIRARHDIWNSVIGGCAAGAFMSASPSDKMTPRARAMQMAFGCASVAA
FSAAIDYYMEYMD*
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mRNA from alignment at ScGOVlb_88:771293..772084-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6442.t1 ID=Gvermi6442.t1|Name=Gvermi6442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=792bp|location=Sequence derived from alignment at ScGOVlb_88:771293..772084- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGTGCAAGGAATCATCCCTATTCGCCGACGTGTGCATCCGAACCGCCC
ACGGAGCATCGCGGACGACGGCGACGCTCGCCGCTTCGGGATCGACTTCA
ATGCCCAGTCCCCAAGGCGTCAAACGTTCCACTCATTATCTTCTCAGTGC
TTGTCTGCTTGGAAGGAACTGTCAAAATCTATCATGTCAGAGCCATTTTC
TTCCTCGGATGAGAATTTCACCCCAACGCATGAGCTGAACCAACCTCCCC
ATCTGTCGCAGAATCCAATTTTTCACGACAATCTGAATCCATTGCAGCGA
GCGATGATGTGGCCGCCCGTTAGTCCAAATCAACCTCCTATCTGGCTTCG
AAGAATGAATAGTGCCTCAGAAACGTGCGTCTTCAAGGCTGGTATATCTG
CGTTTGCGGGTGGAGGACTCGGAGTTCTTTTTGGTTTATTTTTTGGAGGC
TATTCAAATGCGGTCGACAAAGCAGTTGAGACAGAAGGTCCAGCCTCTCT
CAAGCTTCGCGTCGGGTTTAAAGAAGCCGCACGATCTATGCGTTCTTATG
CGAAGAATTTTGCAATGTTTGGCGCCAGTTTTTCAGCGGCTGAGTGCACG
GTTGAAAAGATAAGAGCCAGACACGATATCTGGAACTCAGTTATTGGTGG
TTGTGCTGCGGGTGCTTTCATGTCGGCTTCACCCTCTGACAAAATGACTC
CACGAGCAAGAGCTATGCAAATGGCTTTTGGATGCGCTAGCGTTGCCGCA
TTCAGTGCTGCTATCGACTATTACATGGAGTACATGGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:771293..772084-

>Gvermi6442.t1 ID=Gvermi6442.t1|Name=Gvermi6442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=792bp|location=Sequence derived from alignment at ScGOVlb_88:771293..772084- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGTGCAAGGAATCATCCCTATTCGCCGACGTGTGCATCCGAACCGCCC
ACGGAGCATCGCGGACGACGGCGACGCTCGCCGCTTCGGGATCGACTTCA
ATGCCCAGTCCCCAAGGCGTCAAACGTTCCACTCATTATCTTCTCAGTGC
TTGTCTGCTTGGAAGGAACTGTCAAAATCTATCATGTCAGAGCCATTTTC
TTCCTCGGATGAGAATTTCACCCCAACGCATGAGCTGAACCAACCTCCCC
ATCTGTCGCAGAATCCAATTTTTCACGACAATCTGAATCCATTGCAGCGA
GCGATGATGTGGCCGCCCGTTAGTCCAAATCAACCTCCTATCTGGCTTCG
AAGAATGAATAGTGCCTCAGAAACGTGCGTCTTCAAGGCTGGTATATCTG
CGTTTGCGGGTGGAGGACTCGGAGTTCTTTTTGGTTTATTTTTTGGAGGC
TATTCAAATGCGGTCGACAAAGCAGTTGAGACAGAAGGTCCAGCCTCTCT
CAAGCTTCGCGTCGGGTTTAAAGAAGCCGCACGATCTATGCGTTCTTATG
CGAAGAATTTTGCAATGTTTGGCGCCAGTTTTTCAGCGGCTGAGTGCACG
GTTGAAAAGATAAGAGCCAGACACGATATCTGGAACTCAGTTATTGGTGG
TTGTGCTGCGGGTGCTTTCATGTCGGCTTCACCCTCTGACAAAATGACTC
CACGAGCAAGAGCTATGCAAATGGCTTTTGGATGCGCTAGCGTTGCCGCA
TTCAGTGCTGCTATCGACTATTACATGGAGTACATGGACTAA
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