Gvermi6423.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6423.t1
Unique NameGvermi6423.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:661169..661992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121940.AUDZ01000005_gene1709
Preferred nameapt
PFAMsPribosyltran
Max annot lvl135619|Oceanospirillales
KEGG rclassRC00063
KEGG koko:K00759
KEGG ReactionR00190,R01229,R04378
KEGG Pathwayko00230,ko01100,map00230,map01100
Evalue4.8e-43
EggNOG OGsCOG0503@1|root,COG0503@2|Bacteria,1MVZ6@1224|Proteobacteria,1S2N9@1236|Gammaproteobacteria,1XS3T@135619|Oceanospirillales
EC2.4.2.7
DescriptionCatalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
COG categoryF
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6423Gvermi6423Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 661169..661992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6423.t1Gvermi6423.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 661169..661992 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6423.t1.stop1Gvermi6423.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 661169..661171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6423.t1.CDS1Gvermi6423.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 661169..661554 -
Gvermi6423.t1.CDS2Gvermi6423.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 661629..661992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6423.t1.exon1Gvermi6423.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 661169..661554 -
Gvermi6423.t1.exon2Gvermi6423.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 661629..661992 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6423.t1.intron1Gvermi6423.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 661555..661628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6423.t1.start1Gvermi6423.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 661990..661992 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6423.t1 ID=Gvermi6423.t1|Name=Gvermi6423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=250bp
MSLPAASTAAAAAAAAAPSLDASAPPPEAFSDDEKDPKPAFPPPPMPALG
SLGMHEPYVRSFIHHTPNWPRTGITFLDISPLLADARALRHCIDSLADRY
GGGHLTHVAGIDARGFTLACALAYKLNCGFIMVRKAGKLPPGDDDASSLL
SEPYEMEYGRGQLQMPADLFETSSVATPRVLLVDDLLATGGTARAACNLL
RNAGATIVEVAVLIELCSSQLCGRRRLKEEGYIDLHSLICFSDDGAPCV*
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spliced messenger RNA

>Gvermi6423.t1 ID=Gvermi6423.t1|Name=Gvermi6423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=750bp|location=Sequence derived from alignment at ScGOVlb_88:661169..661992- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTCCCCGCCGCTAGCACCGCCGCTGCCGCCGCCGCTGCCGCTGC
TCCCTCCCTCGACGCATCCGCTCCCCCTCCCGAGGCATTCAGCGACGATG
AAAAGGACCCCAAGCCCGCCTTCCCCCCCCCTCCCATGCCCGCACTCGGC
TCCCTCGGCATGCACGAGCCCTACGTCCGCTCTTTCATCCATCACACTCC
CAACTGGCCGCGCACAGGCATCACCTTTCTCGACATCAGCCCCTTGCTGG
CTGACGCCCGCGCCCTCAGGCATTGCATAGACAGCCTAGCCGACCGCTAC
GGTGGTGGTCATCTCACCCACGTTGCCGGCATCGATGCTCGGGGCTTCAC
TCTAGCGTGTGCCCTTGCCTACAAGCTCAACTGCGGCTTCATTATGGTCA
GAAAGGCGGGCAAATTGCCCCCGGGGGATGACGATGCGTCCTCGCTCTTA
TCGGAGCCCTATGAAATGGAGTATGGTAGAGGTCAATTGCAAATGCCCGC
CGACCTTTTTGAAACCTCGAGTGTCGCCACTCCTCGCGTCTTGCTAGTCG
ATGATCTCCTCGCCACTGGCGGGACCGCCCGCGCTGCCTGCAACTTACTG
AGAAATGCCGGTGCTACAATCGTTGAGGTTGCCGTGCTTATCGAGCTCTG
TTCTTCTCAATTGTGTGGAAGAAGACGCCTTAAAGAGGAAGGCTATATCG
ACCTTCATTCCTTGATCTGTTTCTCCGATGACGGTGCTCCATGCGTATGA
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protein sequence of Gvermi6423.t1

>Gvermi6423.t1 ID=Gvermi6423.t1|Name=Gvermi6423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=250bp
MSLPAASTAAAAAAAAAPSLDASAPPPEAFSDDEKDPKPAFPPPPMPALG
SLGMHEPYVRSFIHHTPNWPRTGITFLDISPLLADARALRHCIDSLADRY
GGGHLTHVAGIDARGFTLACALAYKLNCGFIMVRKAGKLPPGDDDASSLL
SEPYEMEYGRGQLQMPADLFETSSVATPRVLLVDDLLATGGTARAACNLL
RNAGATIVEVAVLIELCSSQLCGRRRLKEEGYIDLHSLICFSDDGAPCV*
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mRNA from alignment at ScGOVlb_88:661169..661992-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6423.t1 ID=Gvermi6423.t1|Name=Gvermi6423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=824bp|location=Sequence derived from alignment at ScGOVlb_88:661169..661992- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCTCCCCGCCGCTAGCACCGCCGCTGCCGCCGCCGCTGCCGCTGC
TCCCTCCCTCGACGCATCCGCTCCCCCTCCCGAGGCATTCAGCGACGATG
AAAAGGACCCCAAGCCCGCCTTCCCCCCCCCTCCCATGCCCGCACTCGGC
TCCCTCGGCATGCACGAGCCCTACGTCCGCTCTTTCATCCATCACACTCC
CAACTGGCCGCGCACAGGCATCACCTTTCTCGACATCAGCCCCTTGCTGG
CTGACGCCCGCGCCCTCAGGCATTGCATAGACAGCCTAGCCGACCGCTAC
GGTGGTGGTCATCTCACCCACGTTGCCGGCATCGATGCTCGGGGCTTCAC
TCTAGCGTGTGCCCGTATGTTGTTCTTCTCAATCTTCCTGTCTCACATCA
TCAATGCTGACTCCTCTGCTTTTCTTCCGCCCCTTCAGTTGCCTACAAGC
TCAACTGCGGCTTCATTATGGTCAGAAAGGCGGGCAAATTGCCCCCGGGG
GATGACGATGCGTCCTCGCTCTTATCGGAGCCCTATGAAATGGAGTATGG
TAGAGGTCAATTGCAAATGCCCGCCGACCTTTTTGAAACCTCGAGTGTCG
CCACTCCTCGCGTCTTGCTAGTCGATGATCTCCTCGCCACTGGCGGGACC
GCCCGCGCTGCCTGCAACTTACTGAGAAATGCCGGTGCTACAATCGTTGA
GGTTGCCGTGCTTATCGAGCTCTGTTCTTCTCAATTGTGTGGAAGAAGAC
GCCTTAAAGAGGAAGGCTATATCGACCTTCATTCCTTGATCTGTTTCTCC
GATGACGGTGCTCCATGCGTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:661169..661992-

>Gvermi6423.t1 ID=Gvermi6423.t1|Name=Gvermi6423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=750bp|location=Sequence derived from alignment at ScGOVlb_88:661169..661992- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCTCCCCGCCGCTAGCACCGCCGCTGCCGCCGCCGCTGCCGCTGC
TCCCTCCCTCGACGCATCCGCTCCCCCTCCCGAGGCATTCAGCGACGATG
AAAAGGACCCCAAGCCCGCCTTCCCCCCCCCTCCCATGCCCGCACTCGGC
TCCCTCGGCATGCACGAGCCCTACGTCCGCTCTTTCATCCATCACACTCC
CAACTGGCCGCGCACAGGCATCACCTTTCTCGACATCAGCCCCTTGCTGG
CTGACGCCCGCGCCCTCAGGCATTGCATAGACAGCCTAGCCGACCGCTAC
GGTGGTGGTCATCTCACCCACGTTGCCGGCATCGATGCTCGGGGCTTCAC
TCTAGCGTGTGCCCTTGCCTACAAGCTCAACTGCGGCTTCATTATGGTCA
GAAAGGCGGGCAAATTGCCCCCGGGGGATGACGATGCGTCCTCGCTCTTA
TCGGAGCCCTATGAAATGGAGTATGGTAGAGGTCAATTGCAAATGCCCGC
CGACCTTTTTGAAACCTCGAGTGTCGCCACTCCTCGCGTCTTGCTAGTCG
ATGATCTCCTCGCCACTGGCGGGACCGCCCGCGCTGCCTGCAACTTACTG
AGAAATGCCGGTGCTACAATCGTTGAGGTTGCCGTGCTTATCGAGCTCTG
TTCTTCTCAATTGTGTGGAAGAAGACGCCTTAAAGAGGAAGGCTATATCG
ACCTTCATTCCTTGATCTGTTTCTCCGATGACGGTGCTCCATGCGTATGA
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