Gvermi6415.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6415.t1
Unique NameGvermi6415.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:606515..606901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121899.Q764_04540
Max annot lvl976|Bacteroidetes
Evalue3.31e-16
EggNOG OGs2DM8U@1|root,3273Z@2|Bacteria,4NQC2@976|Bacteroidetes,1I2Y5@117743|Flavobacteriia,2NWA1@237|Flavobacterium
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6415Gvermi6415Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 606515..606901 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6415.t1.start1Gvermi6415.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 606515..606517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6415.t1.CDS1Gvermi6415.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 606515..606901 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6415.t1.exon1Gvermi6415.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 606515..606901 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6415.t1.stop1Gvermi6415.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 606899..606901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6415.t1Gvermi6415.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 606515..606901 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6415.t1 ID=Gvermi6415.t1|Name=Gvermi6415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=129bp
MHPLIKNALAFIVGLIMSVVAISAIQSLGHSVYPMSKLNPTQSIGLLLFV
EASYLFGSMLGGFCTAKLAATYRMELVMGLGVLLTVFGVQNLIAMPHPLW
FAVLSTCTYLPAAYYGAKLVGENESPFV*
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spliced messenger RNA

>Gvermi6415.t1 ID=Gvermi6415.t1|Name=Gvermi6415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=387bp|location=Sequence derived from alignment at ScGOVlb_88:606515..606901+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCGCTCATCAAAAACGCGTTGGCCTTTATCGTGGGCCTGATCAT
GAGCGTGGTAGCGATATCAGCGATCCAATCGCTCGGCCACAGTGTGTACC
CCATGAGCAAGCTGAACCCGACGCAGTCTATCGGGTTGTTGCTGTTTGTG
GAAGCGTCTTATCTGTTTGGAAGCATGCTCGGCGGCTTCTGCACGGCGAA
GCTGGCAGCCACGTACAGGATGGAGCTTGTGATGGGGCTCGGGGTGTTGC
TGACCGTGTTTGGGGTGCAGAACCTGATTGCCATGCCGCACCCGCTGTGG
TTTGCGGTGCTCTCGACGTGCACGTACTTGCCGGCAGCTTACTATGGCGC
CAAGTTGGTCGGCGAGAACGAGTCGCCGTTTGTTTAA
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protein sequence of Gvermi6415.t1

>Gvermi6415.t1 ID=Gvermi6415.t1|Name=Gvermi6415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=129bp
MHPLIKNALAFIVGLIMSVVAISAIQSLGHSVYPMSKLNPTQSIGLLLFV
EASYLFGSMLGGFCTAKLAATYRMELVMGLGVLLTVFGVQNLIAMPHPLW
FAVLSTCTYLPAAYYGAKLVGENESPFV*
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mRNA from alignment at ScGOVlb_88:606515..606901+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6415.t1 ID=Gvermi6415.t1|Name=Gvermi6415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=387bp|location=Sequence derived from alignment at ScGOVlb_88:606515..606901+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCCGCTCATCAAAAACGCGTTGGCCTTTATCGTGGGCCTGATCAT
GAGCGTGGTAGCGATATCAGCGATCCAATCGCTCGGCCACAGTGTGTACC
CCATGAGCAAGCTGAACCCGACGCAGTCTATCGGGTTGTTGCTGTTTGTG
GAAGCGTCTTATCTGTTTGGAAGCATGCTCGGCGGCTTCTGCACGGCGAA
GCTGGCAGCCACGTACAGGATGGAGCTTGTGATGGGGCTCGGGGTGTTGC
TGACCGTGTTTGGGGTGCAGAACCTGATTGCCATGCCGCACCCGCTGTGG
TTTGCGGTGCTCTCGACGTGCACGTACTTGCCGGCAGCTTACTATGGCGC
CAAGTTGGTCGGCGAGAACGAGTCGCCGTTTGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:606515..606901+

>Gvermi6415.t1 ID=Gvermi6415.t1|Name=Gvermi6415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=387bp|location=Sequence derived from alignment at ScGOVlb_88:606515..606901+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCCGCTCATCAAAAACGCGTTGGCCTTTATCGTGGGCCTGATCAT
GAGCGTGGTAGCGATATCAGCGATCCAATCGCTCGGCCACAGTGTGTACC
CCATGAGCAAGCTGAACCCGACGCAGTCTATCGGGTTGTTGCTGTTTGTG
GAAGCGTCTTATCTGTTTGGAAGCATGCTCGGCGGCTTCTGCACGGCGAA
GCTGGCAGCCACGTACAGGATGGAGCTTGTGATGGGGCTCGGGGTGTTGC
TGACCGTGTTTGGGGTGCAGAACCTGATTGCCATGCCGCACCCGCTGTGG
TTTGCGGTGCTCTCGACGTGCACGTACTTGCCGGCAGCTTACTATGGCGC
CAAGTTGGTCGGCGAGAACGAGTCGCCGTTTGTTTAA
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