Gvermi6399.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6399.t1
Unique NameGvermi6399.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:471699..472385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1454202.PPBDW_130570___1
PFAMsSpond_N
Max annot lvl1236|Gammaproteobacteria
Evalue3.4e-20
EggNOG OGsKOG3539@1|root,32TPV@2|Bacteria,1N2ES@1224|Proteobacteria,1SM6W@1236|Gammaproteobacteria
DescriptionSpondin_N
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6399Gvermi6399Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 471699..472385 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6399.t1.stop1Gvermi6399.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 471699..471701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6399.t1.CDS1Gvermi6399.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 471699..472385 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6399.t1.exon1Gvermi6399.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 471699..472385 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6399.t1.start1Gvermi6399.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 472383..472385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6399.t1Gvermi6399.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 471699..472385 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6399.t1 ID=Gvermi6399.t1|Name=Gvermi6399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=229bp
MFRRLLSCLLTAALIHAVSAAGVVPGCGSPAVYTITFRNMLTSRQFGNSI
PQGGLVFSPITGASHSGRVSILTVRGYASPQIEQIAETGDNRRLAKLAQH
LRDANKGVKSVVAANGPTRPGQRTTLRFTVDCEHPFVSFVGMIAPSPDWL
VLVANQNLFMQGRFVKSVWGKLFAYDAGTDDGGDFTDPLDAGLDMPSEPP
KNIAPLVEDKTDPFRGRAVGTYFIQRVK*
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spliced messenger RNA

>Gvermi6399.t1 ID=Gvermi6399.t1|Name=Gvermi6399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_88:471699..472385- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCCGACTTTTGTCTTGCCTGCTGACCGCAGCCCTCATTCATGC
TGTTTCCGCAGCAGGGGTGGTTCCCGGTTGCGGATCACCGGCGGTGTACA
CCATTACATTCCGTAACATGCTGACTTCCCGACAGTTCGGCAACTCCATT
CCACAAGGAGGTCTCGTGTTCTCCCCGATCACCGGTGCATCTCATTCGGG
CCGTGTCTCAATTCTCACCGTTCGTGGCTACGCCTCTCCCCAGATTGAAC
AGATTGCTGAGACGGGCGACAATCGCCGCCTGGCGAAGCTCGCCCAGCAT
CTGCGCGACGCCAACAAGGGCGTGAAGAGCGTCGTCGCAGCCAATGGCCC
CACCAGACCCGGGCAACGCACAACGCTGCGCTTCACCGTTGACTGCGAGC
ACCCATTCGTCTCGTTTGTCGGCATGATTGCCCCGTCTCCGGACTGGTTG
GTGCTCGTTGCAAACCAGAACCTGTTCATGCAGGGGCGTTTTGTCAAGTC
TGTTTGGGGTAAGCTCTTTGCCTATGATGCTGGTACTGACGATGGAGGGG
ACTTCACTGATCCGTTGGATGCTGGTCTTGACATGCCGTCCGAGCCTCCG
AAAAACATTGCTCCTTTGGTGGAGGATAAGACAGATCCTTTCCGCGGTCG
TGCAGTCGGTACCTACTTCATTCAAAGGGTTAAGTAA
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protein sequence of Gvermi6399.t1

>Gvermi6399.t1 ID=Gvermi6399.t1|Name=Gvermi6399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=229bp
MFRRLLSCLLTAALIHAVSAAGVVPGCGSPAVYTITFRNMLTSRQFGNSI
PQGGLVFSPITGASHSGRVSILTVRGYASPQIEQIAETGDNRRLAKLAQH
LRDANKGVKSVVAANGPTRPGQRTTLRFTVDCEHPFVSFVGMIAPSPDWL
VLVANQNLFMQGRFVKSVWGKLFAYDAGTDDGGDFTDPLDAGLDMPSEPP
KNIAPLVEDKTDPFRGRAVGTYFIQRVK*
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mRNA from alignment at ScGOVlb_88:471699..472385-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6399.t1 ID=Gvermi6399.t1|Name=Gvermi6399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_88:471699..472385- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCGCCGACTTTTGTCTTGCCTGCTGACCGCAGCCCTCATTCATGC
TGTTTCCGCAGCAGGGGTGGTTCCCGGTTGCGGATCACCGGCGGTGTACA
CCATTACATTCCGTAACATGCTGACTTCCCGACAGTTCGGCAACTCCATT
CCACAAGGAGGTCTCGTGTTCTCCCCGATCACCGGTGCATCTCATTCGGG
CCGTGTCTCAATTCTCACCGTTCGTGGCTACGCCTCTCCCCAGATTGAAC
AGATTGCTGAGACGGGCGACAATCGCCGCCTGGCGAAGCTCGCCCAGCAT
CTGCGCGACGCCAACAAGGGCGTGAAGAGCGTCGTCGCAGCCAATGGCCC
CACCAGACCCGGGCAACGCACAACGCTGCGCTTCACCGTTGACTGCGAGC
ACCCATTCGTCTCGTTTGTCGGCATGATTGCCCCGTCTCCGGACTGGTTG
GTGCTCGTTGCAAACCAGAACCTGTTCATGCAGGGGCGTTTTGTCAAGTC
TGTTTGGGGTAAGCTCTTTGCCTATGATGCTGGTACTGACGATGGAGGGG
ACTTCACTGATCCGTTGGATGCTGGTCTTGACATGCCGTCCGAGCCTCCG
AAAAACATTGCTCCTTTGGTGGAGGATAAGACAGATCCTTTCCGCGGTCG
TGCAGTCGGTACCTACTTCATTCAAAGGGTTAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:471699..472385-

>Gvermi6399.t1 ID=Gvermi6399.t1|Name=Gvermi6399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=687bp|location=Sequence derived from alignment at ScGOVlb_88:471699..472385- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCGCCGACTTTTGTCTTGCCTGCTGACCGCAGCCCTCATTCATGC
TGTTTCCGCAGCAGGGGTGGTTCCCGGTTGCGGATCACCGGCGGTGTACA
CCATTACATTCCGTAACATGCTGACTTCCCGACAGTTCGGCAACTCCATT
CCACAAGGAGGTCTCGTGTTCTCCCCGATCACCGGTGCATCTCATTCGGG
CCGTGTCTCAATTCTCACCGTTCGTGGCTACGCCTCTCCCCAGATTGAAC
AGATTGCTGAGACGGGCGACAATCGCCGCCTGGCGAAGCTCGCCCAGCAT
CTGCGCGACGCCAACAAGGGCGTGAAGAGCGTCGTCGCAGCCAATGGCCC
CACCAGACCCGGGCAACGCACAACGCTGCGCTTCACCGTTGACTGCGAGC
ACCCATTCGTCTCGTTTGTCGGCATGATTGCCCCGTCTCCGGACTGGTTG
GTGCTCGTTGCAAACCAGAACCTGTTCATGCAGGGGCGTTTTGTCAAGTC
TGTTTGGGGTAAGCTCTTTGCCTATGATGCTGGTACTGACGATGGAGGGG
ACTTCACTGATCCGTTGGATGCTGGTCTTGACATGCCGTCCGAGCCTCCG
AAAAACATTGCTCCTTTGGTGGAGGATAAGACAGATCCTTTCCGCGGTCG
TGCAGTCGGTACCTACTTCATTCAAAGGGTTAAGTAA
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