Gvermi6372.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6372.t1
Unique NameGvermi6372.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:361839..362797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6372Gvermi6372Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 361839..362797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6372.t1Gvermi6372.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 361839..362797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6372.t1.stop1Gvermi6372.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 361839..361841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6372.t1.CDS1Gvermi6372.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 361839..362291 -
Gvermi6372.t1.CDS2Gvermi6372.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 362645..362797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6372.t1.exon1Gvermi6372.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 361839..362291 -
Gvermi6372.t1.exon2Gvermi6372.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 362645..362797 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6372.t1.intron1Gvermi6372.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 362292..362644 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6372.t1.start1Gvermi6372.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 362795..362797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6372.t1 ID=Gvermi6372.t1|Name=Gvermi6372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=202bp
MRSVSKVMLVAGEPINNELSGIQHIELRLSEAKVISGLSVEMAVPNKDVK
AKASIAADELICALAFRASVSDNIGIPDALAGGRNEGIGLDSNPTCGEML
TVTDKLPFVMVLLSDIEGYVDIYESTDPSGIDIGILGEELAFATNGSRET
YGIPEYLRKEGTERDACDRTPSSNVTRVAEGSTLDELSASAKDNDIKRRH
S*
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spliced messenger RNA

>Gvermi6372.t1 ID=Gvermi6372.t1|Name=Gvermi6372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp|location=Sequence derived from alignment at ScGOVlb_88:361839..362797- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATCGGTGTCGAAGGTTATGTTAGTTGCTGGTGAGCCTATAAACAA
CGAATTATCAGGGATTCAGCATATTGAACTTAGATTGAGCGAAGCGAAAG
TAATTTCAGGGCTTTCTGTTGAAATGGCGGTTCCCAACAAGGATGTGAAA
GCAAAAGCTTCCATCGCTGCTGACGAGCTCATCTGTGCTCTAGCGTTTCG
AGCTTCCGTTTCTGACAACATTGGAATACCAGACGCGCTGGCAGGTGGGC
GCAATGAAGGAATAGGACTAGATTCGAATCCCACTTGTGGAGAAATGCTA
ACCGTAACAGACAAGTTACCCTTTGTAATGGTGCTCCTCAGTGATATCGA
AGGATACGTCGATATATACGAAAGCACCGATCCCTCGGGGATTGATATTG
GAATACTAGGCGAAGAGCTTGCATTTGCGACGAACGGGAGCCGCGAGACA
TATGGCATACCAGAATACTTGAGAAAAGAGGGTACAGAAAGAGACGCCTG
TGATAGGACACCAAGCTCGAATGTCACAAGAGTCGCAGAAGGATCCACGC
TCGACGAGCTTTCAGCAAGTGCGAAAGACAATGATATCAAAAGGCGACAC
AGTTGA
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protein sequence of Gvermi6372.t1

>Gvermi6372.t1 ID=Gvermi6372.t1|Name=Gvermi6372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=202bp
MRSVSKVMLVAGEPINNELSGIQHIELRLSEAKVISGLSVEMAVPNKDVK
AKASIAADELICALAFRASVSDNIGIPDALAGGRNEGIGLDSNPTCGEML
TVTDKLPFVMVLLSDIEGYVDIYESTDPSGIDIGILGEELAFATNGSRET
YGIPEYLRKEGTERDACDRTPSSNVTRVAEGSTLDELSASAKDNDIKRRH
S*
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mRNA from alignment at ScGOVlb_88:361839..362797-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6372.t1 ID=Gvermi6372.t1|Name=Gvermi6372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=959bp|location=Sequence derived from alignment at ScGOVlb_88:361839..362797- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGATCGGTGTCGAAGGTTATGTTAGTTGCTGGTGAGCCTATAAACAA
CGAATTATCAGGGATTCAGCATATTGAACTTAGATTGAGCGAAGCGAAAG
TAATTTCAGGGCTTTCTGTTGAAATGGCGGTTCCCAACAAGGATGTGAAA
GCAGTAAGCAACGGCGACTTTGTTGGGGGTATGGAGAGGAAAGCAGTCTC
GGTGGGCAAGTCCGTTATCTCGACCGCAATAGCGCTTGGCCGAGGGCTAG
AGCTAGCGTCTGAATTTTTGCCACTCGCGGATGGCTTGAGATAAGTTGCG
AGAGTCGTTTCCGAGCAGCGGGCTCTGGCTGCGGCTTCCACTCAAGGTTG
GCGCGCAAAGCATCGACGCAGGGGAAGAAATGGACGCTTAGGCATCGAAG
CGGGTCATTGGCATGCGAGAGCCACACGTTATTCTCGAAGGCAACACAGC
CAATGAAGTATCAGATGCTGTGTACGGAGTGATTGTATCCAAGTTTGTCA
GTCTAGAAAGCTTCCATCGCTGCTGACGAGCTCATCTGTGCTCTAGCGTT
TCGAGCTTCCGTTTCTGACAACATTGGAATACCAGACGCGCTGGCAGGTG
GGCGCAATGAAGGAATAGGACTAGATTCGAATCCCACTTGTGGAGAAATG
CTAACCGTAACAGACAAGTTACCCTTTGTAATGGTGCTCCTCAGTGATAT
CGAAGGATACGTCGATATATACGAAAGCACCGATCCCTCGGGGATTGATA
TTGGAATACTAGGCGAAGAGCTTGCATTTGCGACGAACGGGAGCCGCGAG
ACATATGGCATACCAGAATACTTGAGAAAAGAGGGTACAGAAAGAGACGC
CTGTGATAGGACACCAAGCTCGAATGTCACAAGAGTCGCAGAAGGATCCA
CGCTCGACGAGCTTTCAGCAAGTGCGAAAGACAATGATATCAAAAGGCGA
CACAGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:361839..362797-

>Gvermi6372.t1 ID=Gvermi6372.t1|Name=Gvermi6372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=606bp|location=Sequence derived from alignment at ScGOVlb_88:361839..362797- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGATCGGTGTCGAAGGTTATGTTAGTTGCTGGTGAGCCTATAAACAA
CGAATTATCAGGGATTCAGCATATTGAACTTAGATTGAGCGAAGCGAAAG
TAATTTCAGGGCTTTCTGTTGAAATGGCGGTTCCCAACAAGGATGTGAAA
GCAAAAGCTTCCATCGCTGCTGACGAGCTCATCTGTGCTCTAGCGTTTCG
AGCTTCCGTTTCTGACAACATTGGAATACCAGACGCGCTGGCAGGTGGGC
GCAATGAAGGAATAGGACTAGATTCGAATCCCACTTGTGGAGAAATGCTA
ACCGTAACAGACAAGTTACCCTTTGTAATGGTGCTCCTCAGTGATATCGA
AGGATACGTCGATATATACGAAAGCACCGATCCCTCGGGGATTGATATTG
GAATACTAGGCGAAGAGCTTGCATTTGCGACGAACGGGAGCCGCGAGACA
TATGGCATACCAGAATACTTGAGAAAAGAGGGTACAGAAAGAGACGCCTG
TGATAGGACACCAAGCTCGAATGTCACAAGAGTCGCAGAAGGATCCACGC
TCGACGAGCTTTCAGCAAGTGCGAAAGACAATGATATCAAAAGGCGACAC
AGTTGA
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