Gvermi6342.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6342.t1
Unique NameGvermi6342.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:182127..182476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_01186T0
Preferred nameRPS21
PFAMsRibosomal_S21e
Max annot lvl4751|Fungi
KEGG koko:K02971
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0002182,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006414,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0031123,GO:0031125,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue4.33e-31
EggNOG OGsKOG3486@1|root,KOG3486@2759|Eukaryota,3A5Y0@33154|Opisthokonta,3P5CA@4751|Fungi
DescriptionRequired for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6342Gvermi6342Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 182127..182476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6342.t1Gvermi6342.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 182127..182476 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6342.t1.start1Gvermi6342.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 182127..182129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6342.t1.CDS1Gvermi6342.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 182127..182176 +
Gvermi6342.t1.CDS2Gvermi6342.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 182278..182476 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6342.t1.exon1Gvermi6342.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 182127..182176 +
Gvermi6342.t1.exon2Gvermi6342.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 182278..182476 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6342.t1.intron1Gvermi6342.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 182177..182277 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6342.t1.stop1Gvermi6342.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 182474..182476 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6342.t1 ID=Gvermi6342.t1|Name=Gvermi6342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=83bp
MQNDKGEVVDLYIPRKCSASNRLITAKDHASVQINIARVDDNGVVSGEYD
TIAICGYVRRKGLSDEAFYRIAKDKGYYETTK*
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spliced messenger RNA

>Gvermi6342.t1 ID=Gvermi6342.t1|Name=Gvermi6342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=249bp|location=Sequence derived from alignment at ScGOVlb_88:182127..182476+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAACGATAAAGGGGAGGTTGTAGACCTCTACATCCCGCGCAAATG
CTCGGCGTCGAACCGTCTCATCACCGCGAAGGACCACGCCTCGGTGCAGA
TCAACATCGCGCGCGTTGACGACAACGGCGTGGTCAGCGGCGAGTACGAC
ACGATCGCCATTTGCGGCTACGTGCGACGCAAGGGGCTGAGTGACGAGGC
GTTCTACCGCATCGCCAAGGACAAGGGCTACTACGAAACCACAAAGTGA
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protein sequence of Gvermi6342.t1

>Gvermi6342.t1 ID=Gvermi6342.t1|Name=Gvermi6342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=83bp
MQNDKGEVVDLYIPRKCSASNRLITAKDHASVQINIARVDDNGVVSGEYD
TIAICGYVRRKGLSDEAFYRIAKDKGYYETTK*
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mRNA from alignment at ScGOVlb_88:182127..182476+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6342.t1 ID=Gvermi6342.t1|Name=Gvermi6342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=350bp|location=Sequence derived from alignment at ScGOVlb_88:182127..182476+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAACGATAAAGGGGAGGTTGTAGACCTCTACATCCCGCGCAAATG
GTGCGTTGACCCTGCTCGCAccgccgccacgctgccgccgccgccgccgc
cgccACGCCCGTGTGACTAACCTCCTTCCCGCTCCCGTCTCGCACGCGCA
GCTCGGCGTCGAACCGTCTCATCACCGCGAAGGACCACGCCTCGGTGCAG
ATCAACATCGCGCGCGTTGACGACAACGGCGTGGTCAGCGGCGAGTACGA
CACGATCGCCATTTGCGGCTACGTGCGACGCAAGGGGCTGAGTGACGAGG
CGTTCTACCGCATCGCCAAGGACAAGGGCTACTACGAAACCACAAAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:182127..182476+

>Gvermi6342.t1 ID=Gvermi6342.t1|Name=Gvermi6342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=249bp|location=Sequence derived from alignment at ScGOVlb_88:182127..182476+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAACGATAAAGGGGAGGTTGTAGACCTCTACATCCCGCGCAAATG
CTCGGCGTCGAACCGTCTCATCACCGCGAAGGACCACGCCTCGGTGCAGA
TCAACATCGCGCGCGTTGACGACAACGGCGTGGTCAGCGGCGAGTACGAC
ACGATCGCCATTTGCGGCTACGTGCGACGCAAGGGGCTGAGTGACGAGGC
GTTCTACCGCATCGCCAAGGACAAGGGCTACTACGAAACCACAAAGTGA
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