Gvermi6327.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6327.t1
Unique NameGvermi6327.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:4996..5459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6327Gvermi6327Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 4996..5459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6327.t1Gvermi6327.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 4996..5459 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6327.t1.start1Gvermi6327.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 4996..4998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6327.t1.CDS1Gvermi6327.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 4996..5007 +
Gvermi6327.t1.CDS2Gvermi6327.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 5083..5159 +
Gvermi6327.t1.CDS3Gvermi6327.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 5233..5295 +
Gvermi6327.t1.CDS4Gvermi6327.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 5387..5459 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6327.t1.exon1Gvermi6327.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 4996..5007 +
Gvermi6327.t1.exon2Gvermi6327.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 5083..5159 +
Gvermi6327.t1.exon3Gvermi6327.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 5233..5295 +
Gvermi6327.t1.exon4Gvermi6327.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 5387..5459 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6327.t1.intron1Gvermi6327.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 5008..5082 +
Gvermi6327.t1.intron2Gvermi6327.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 5160..5232 +
Gvermi6327.t1.intron3Gvermi6327.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 5296..5386 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6327.t1.stop1Gvermi6327.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 5457..5459 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6327.t1 ID=Gvermi6327.t1|Name=Gvermi6327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=75bp
MERTEIVSFVNADGRAGLHFAVNSDLQRSIDASCSGKIGKREPQFGASRQ
AESAAKPVVLLLLYFTFSRNPGHT*
back to top

spliced messenger RNA

>Gvermi6327.t1 ID=Gvermi6327.t1|Name=Gvermi6327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=225bp|location=Sequence derived from alignment at ScGOVlb_88:4996..5459+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGAACGGAAATAGTGAGTTTTGTGAACGCGGATGGACGGGCGGG
GTTGCATTTCGCGGTGAATAGCGACCTGCAGAGGAGCATCGATGCAAGCT
GTTCAGGTAAAATTGGAAAACGTGAACCACAGTTTGGTGCAAGCAGACAA
GCAGAAAGTGCCGCAAAACCGGTTGTTCTCCTGTTATTGTACTTCACGTT
CTCCCGGAACCCTGGGCACACATAG
back to top

protein sequence of Gvermi6327.t1

>Gvermi6327.t1 ID=Gvermi6327.t1|Name=Gvermi6327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=75bp
MERTEIVSFVNADGRAGLHFAVNSDLQRSIDASCSGKIGKREPQFGASRQ
AESAAKPVVLLLLYFTFSRNPGHT*
back to top

mRNA from alignment at ScGOVlb_88:4996..5459+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6327.t1 ID=Gvermi6327.t1|Name=Gvermi6327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=464bp|location=Sequence derived from alignment at ScGOVlb_88:4996..5459+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGAACGGTAAGTTTTTGGGTGCTTGCTTTGTAAGGCGTGAACGA
TGTGACTGACTGACTAGCATGTGTGTTTGTTGCGCAGGAAATAGTGAGTT
TTGTGAACGCGGATGGACGGGCGGGGTTGCATTTCGCGGTGAATAGCGAC
CTGCAGAGGAGCATGTACCTGCTGAGCATGGGCGTGGACGCGGCGCGGAT
GGACAGGTGGAGCGTTTCGGCAGTGGGCAAGGAGAAGCGATGCAAGCTGT
TCAGGTAAAATTGGAAAACGTGAACCACAGTTTGGTGCAAGCAGACAAGC
GTACGTCGGAAGCAGCCAGTAAAGAGGTTCAAGGAACCAACAGTACGTTT
GAAGTGCAAATCTGCACAGCAAAGATGTTAACCTCATGCAGAGAAAGTGC
CGCAAAACCGGTTGTTCTCCTGTTATTGTACTTCACGTTCTCCCGGAACC
CTGGGCACACATAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:4996..5459+

>Gvermi6327.t1 ID=Gvermi6327.t1|Name=Gvermi6327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=225bp|location=Sequence derived from alignment at ScGOVlb_88:4996..5459+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGAACGGAAATAGTGAGTTTTGTGAACGCGGATGGACGGGCGGG
GTTGCATTTCGCGGTGAATAGCGACCTGCAGAGGAGCATCGATGCAAGCT
GTTCAGGTAAAATTGGAAAACGTGAACCACAGTTTGGTGCAAGCAGACAA
GCAGAAAGTGCCGCAAAACCGGTTGTTCTCCTGTTATTGTACTTCACGTT
CTCCCGGAACCCTGGGCACACATAG
back to top