Gvermi6208.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6208.t1
Unique NameGvermi6208.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:3274020..3274685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128427.KB904821_gene2143
PFAMsHis_Phos_1
Max annot lvl1117|Cyanobacteria
Evalue9.53e-55
EggNOG OGsCOG0406@1|root,COG0406@2|Bacteria,1G0NK@1117|Cyanobacteria,1H7MJ@1150|Oscillatoriales
Descriptionphosphoglycerate mutase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6208Gvermi6208Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 3274020..3274685 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6208.t1.stop1Gvermi6208.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 3274020..3274022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6208.t1.CDS1Gvermi6208.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 3274020..3274685 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6208.t1.exon1Gvermi6208.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 3274020..3274685 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6208.t1.start1Gvermi6208.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 3274683..3274685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6208.t1Gvermi6208.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 3274020..3274685 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6208.t1 ID=Gvermi6208.t1|Name=Gvermi6208.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=222bp
MVASTVYIARHGERIDHVDKTWKATAERPHDPFLTETGIQQASFLAKHLE
AKHLSHIFVSPFLRTVQTANEVSKVTGLPIKIEPGLSEWLNPQWFPSTPT
MLPVKALKEQFPSIDTTHHPLVYPDYPETRDRVIARSRQIATLLAAKYSG
NLLLVSHGMTCEFTARGLTDAGRRPFISYCSLQTCVRVHDEDKYVIHGPD
EPDVSFMPEGIRPDVLNGVYQ*
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spliced messenger RNA

>Gvermi6208.t1 ID=Gvermi6208.t1|Name=Gvermi6208.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_1708:3274020..3274685- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCTCCACGGTTTACATCGCGCGCCACGGCGAGAGGATTGATCA
CGTAGACAAAACTTGGAAGGCAACCGCCGAACGCCCGCATGACCCATTTC
TCACGGAAACAGGAATCCAGCAAGCGTCTTTCCTCGCCAAGCACCTCGAG
GCCAAGCACCTCTCCCACATATTTGTCAGCCCCTTCCTGCGGACCGTGCA
GACCGCCAACGAGGTGTCAAAGGTCACCGGCCTGCCCATCAAAATAGAAC
CCGGCCTCAGCGAATGGCTCAATCCGCAGTGGTTTCCCTCCACGCCAACC
ATGCTTCCCGTCAAGGCGCTCAAGGAGCAGTTCCCCTCCATCGACACCAC
GCACCACCCGTTGGTGTACCCCGACTATCCCGAAACGCGCGACCGCGTCA
TTGCGCGCTCGCGCCAAATCGCCACGCTTTTGGCCGCCAAGTACTCGGGC
AACCTGCTGCTCGTTTCGCACGGAATGACCTGCGAATTCACGGCCCGCGG
CCTCACCGACGCCGGAAGGCGACCGTTCATTTCTTACTGTTCGCTGCAAA
CCTGTGTTCGCGTCCACGACGAGGACAAGTACGTCATTCACGGCCCAGAT
GAGCCGGACGTCAGCTTCATGCCGGAGGGCATCCGCCCAGATGTCTTGAA
CGGTGTCTACCAGTAA
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protein sequence of Gvermi6208.t1

>Gvermi6208.t1 ID=Gvermi6208.t1|Name=Gvermi6208.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MVASTVYIARHGERIDHVDKTWKATAERPHDPFLTETGIQQASFLAKHLE
AKHLSHIFVSPFLRTVQTANEVSKVTGLPIKIEPGLSEWLNPQWFPSTPT
MLPVKALKEQFPSIDTTHHPLVYPDYPETRDRVIARSRQIATLLAAKYSG
NLLLVSHGMTCEFTARGLTDAGRRPFISYCSLQTCVRVHDEDKYVIHGPD
EPDVSFMPEGIRPDVLNGVYQ*
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mRNA from alignment at ScGOVlb_1708:3274020..3274685-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6208.t1 ID=Gvermi6208.t1|Name=Gvermi6208.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_1708:3274020..3274685- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCTCCACGGTTTACATCGCGCGCCACGGCGAGAGGATTGATCA
CGTAGACAAAACTTGGAAGGCAACCGCCGAACGCCCGCATGACCCATTTC
TCACGGAAACAGGAATCCAGCAAGCGTCTTTCCTCGCCAAGCACCTCGAG
GCCAAGCACCTCTCCCACATATTTGTCAGCCCCTTCCTGCGGACCGTGCA
GACCGCCAACGAGGTGTCAAAGGTCACCGGCCTGCCCATCAAAATAGAAC
CCGGCCTCAGCGAATGGCTCAATCCGCAGTGGTTTCCCTCCACGCCAACC
ATGCTTCCCGTCAAGGCGCTCAAGGAGCAGTTCCCCTCCATCGACACCAC
GCACCACCCGTTGGTGTACCCCGACTATCCCGAAACGCGCGACCGCGTCA
TTGCGCGCTCGCGCCAAATCGCCACGCTTTTGGCCGCCAAGTACTCGGGC
AACCTGCTGCTCGTTTCGCACGGAATGACCTGCGAATTCACGGCCCGCGG
CCTCACCGACGCCGGAAGGCGACCGTTCATTTCTTACTGTTCGCTGCAAA
CCTGTGTTCGCGTCCACGACGAGGACAAGTACGTCATTCACGGCCCAGAT
GAGCCGGACGTCAGCTTCATGCCGGAGGGCATCCGCCCAGATGTCTTGAA
CGGTGTCTACCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:3274020..3274685-

>Gvermi6208.t1 ID=Gvermi6208.t1|Name=Gvermi6208.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=666bp|location=Sequence derived from alignment at ScGOVlb_1708:3274020..3274685- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCTCCACGGTTTACATCGCGCGCCACGGCGAGAGGATTGATCA
CGTAGACAAAACTTGGAAGGCAACCGCCGAACGCCCGCATGACCCATTTC
TCACGGAAACAGGAATCCAGCAAGCGTCTTTCCTCGCCAAGCACCTCGAG
GCCAAGCACCTCTCCCACATATTTGTCAGCCCCTTCCTGCGGACCGTGCA
GACCGCCAACGAGGTGTCAAAGGTCACCGGCCTGCCCATCAAAATAGAAC
CCGGCCTCAGCGAATGGCTCAATCCGCAGTGGTTTCCCTCCACGCCAACC
ATGCTTCCCGTCAAGGCGCTCAAGGAGCAGTTCCCCTCCATCGACACCAC
GCACCACCCGTTGGTGTACCCCGACTATCCCGAAACGCGCGACCGCGTCA
TTGCGCGCTCGCGCCAAATCGCCACGCTTTTGGCCGCCAAGTACTCGGGC
AACCTGCTGCTCGTTTCGCACGGAATGACCTGCGAATTCACGGCCCGCGG
CCTCACCGACGCCGGAAGGCGACCGTTCATTTCTTACTGTTCGCTGCAAA
CCTGTGTTCGCGTCCACGACGAGGACAAGTACGTCATTCACGGCCCAGAT
GAGCCGGACGTCAGCTTCATGCCGGAGGGCATCCGCCCAGATGTCTTGAA
CGGTGTCTACCAGTAA
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