Gvermi6129.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6129.t1
Unique Name	Gvermi6129.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	388

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:2634678..2635841 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	588596.U9TVN8
PFAMs	Abhydrolase_1
Max annot lvl	4751\|Fungi
KEGG rclass	RC00037,RC00094
KEGG ko	ko:K13535
KEGG Reaction	R09038
KEGG Pathway	ko00564,map00564
GOs	GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046471,GO:0046486,GO:0052689,GO:0061024,GO:0071704,GO:0071840
Evalue	9.25e-55
EggNOG OGs	COG0596@1\|root,KOG4409@2759\|Eukaryota,38H8B@33154\|Opisthokonta,3NWMD@4751\|Fungi
Description	Alpha beta hydrolase
COG category	EH
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6129	Gvermi6129	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 2634678..2635841 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6129.t1.start1	Gvermi6129.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 2634678..2634680 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6129.t1.CDS1	Gvermi6129.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 2634678..2635841 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6129.t1.exon1	Gvermi6129.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 2634678..2635841 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6129.t1.stop1	Gvermi6129.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 2635839..2635841 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6129.t1	Gvermi6129.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 2634678..2635841 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:2634678..2635841+
coding sequence from alignment at ScGOVlb_1708:2634678..2635841+

mRNA sequence

>Gvermi6129.t1 ID=Gvermi6129.t1|Name=Gvermi6129.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=388bp
MGSTLSRILPTFRLCTPCATACPSGPLPCQRREAFSAPTHDTLSTVEAAE
SLLLRFLTRVEYTKRRVALPSGQTLNMLSAGDVSKPPLVLLHGWGAGLAF
FGRNIAGLAPHYRLHLLDWPGFGASSRPHHSTALSVDDAEAYFLDAFEAW
VDFMRAQEACFGRFHIVAHSMGAYLAAVYALRCPHNVLTLTLASPVGLPA
APPQKIPAGPFMRRAIFWIVFRLWDLGFTPQYLIRHAGTGLGRRLAHRFI
EPRFRFQSEHTKHAFVEYFYQISAADAAGEHSLSTILESGAYARKPLAER
MVNLQIPTSFLYGDRDWMSSQYAEKVCEQMKAPASVHIVKGAGHHLYYDN
AKAFTELILESCSRGREISGSSSCSADVRQPISVACN*

spliced messenger RNA

>Gvermi6129.t1 ID=Gvermi6129.t1|Name=Gvermi6129.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at ScGOVlb_1708:2634678..2635841+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCACACTGTCGCGCATTCTCCCCACCTTCCGTTTGTGCACCCC
TTGTGCCACCGCTTGTCCCTCTGGGCCGTTACCATGTCAGCGCCGCGAAG
CATTCTCCGCGCCTACACACGACACCCTCTCCACCGTAGAGGCCGCCGAG
TCGCTTTTGCTTCGCTTTCTTACCCGCGTGGAGTACACCAAACGGCGGGT
GGCGCTCCCATCGGGCCAGACGCTGAATATGCTGTCTGCAGGTGATGTCT
CCAAGCCGCCACTTGTCCTGTTGCATGGCTGGGGCGCAGGTCTGGCCTTC
TTCGGACGCAATATTGCCGGCCTAGCTCCGCACTACCGGCTTCACCTGCT
GGACTGGCCTGGCTTCGGCGCCAGTTCACGCCCGCATCATTCCACGGCGC
TGTCTGTGGATGACGCTGAAGCCTACTTTCTGGATGCCTTTGAAGCATGG
GTTGATTTCATGCGAGCGCAGGAGGCTTGTTTTGGCCGCTTTCACATCGT
TGCGCATTCCATGGGCGCATATCTGGCAGCGGTGTATGCACTACGATGCC
CACACAACGTCCTGACCCTCACACTCGCTAGTCCTGTTGGCCTGCCAGCG
GCACCGCCGCAGAAAATACCGGCGGGGCCGTTCATGCGTCGTGCTATTTT
CTGGATTGTGTTCAGATTGTGGGATCTAGGCTTCACGCCCCAGTACCTTA
TCCGTCACGCTGGCACCGGTCTTGGTCGCAGACTAGCCCATCGCTTTATT
GAGCCGCGTTTCCGCTTTCAGTCAGAGCACACTAAGCATGCTTTCGTTGA
GTATTTCTATCAAATTTCAGCTGCCGACGCCGCCGGGGAGCATTCACTGT
CTACTATTTTGGAAAGCGGCGCTTATGCACGCAAACCACTCGCGGAACGT
ATGGTAAATCTGCAGATCCCCACGTCGTTTTTATACGGTGATAGGGACTG
GATGAGTTCTCAGTACGCAGAGAAGGTTTGCGAACAAATGAAAGCCCCGG
CTTCAGTGCACATTGTTAAAGGAGCTGGTCACCACTTATACTACGATAAC
GCAAAAGCCTTCACCGAGCTAATATTGGAGAGCTGTAGTCGGGGACGAGA
AATCTCGGGATCATCATCATGTTCCGCAGACGTCAGGCAACCGATTTCCG
TGGCATGCAATTGA

protein sequence of Gvermi6129.t1

>Gvermi6129.t1 ID=Gvermi6129.t1|Name=Gvermi6129.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=388bp
MGSTLSRILPTFRLCTPCATACPSGPLPCQRREAFSAPTHDTLSTVEAAE
SLLLRFLTRVEYTKRRVALPSGQTLNMLSAGDVSKPPLVLLHGWGAGLAF
FGRNIAGLAPHYRLHLLDWPGFGASSRPHHSTALSVDDAEAYFLDAFEAW
VDFMRAQEACFGRFHIVAHSMGAYLAAVYALRCPHNVLTLTLASPVGLPA
APPQKIPAGPFMRRAIFWIVFRLWDLGFTPQYLIRHAGTGLGRRLAHRFI
EPRFRFQSEHTKHAFVEYFYQISAADAAGEHSLSTILESGAYARKPLAER
MVNLQIPTSFLYGDRDWMSSQYAEKVCEQMKAPASVHIVKGAGHHLYYDN
AKAFTELILESCSRGREISGSSSCSADVRQPISVACN*

mRNA from alignment at ScGOVlb_1708:2634678..2635841+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6129.t1 ID=Gvermi6129.t1|Name=Gvermi6129.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at ScGOVlb_1708:2634678..2635841+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCACACTGTCGCGCATTCTCCCCACCTTCCGTTTGTGCACCCC
TTGTGCCACCGCTTGTCCCTCTGGGCCGTTACCATGTCAGCGCCGCGAAG
CATTCTCCGCGCCTACACACGACACCCTCTCCACCGTAGAGGCCGCCGAG
TCGCTTTTGCTTCGCTTTCTTACCCGCGTGGAGTACACCAAACGGCGGGT
GGCGCTCCCATCGGGCCAGACGCTGAATATGCTGTCTGCAGGTGATGTCT
CCAAGCCGCCACTTGTCCTGTTGCATGGCTGGGGCGCAGGTCTGGCCTTC
TTCGGACGCAATATTGCCGGCCTAGCTCCGCACTACCGGCTTCACCTGCT
GGACTGGCCTGGCTTCGGCGCCAGTTCACGCCCGCATCATTCCACGGCGC
TGTCTGTGGATGACGCTGAAGCCTACTTTCTGGATGCCTTTGAAGCATGG
GTTGATTTCATGCGAGCGCAGGAGGCTTGTTTTGGCCGCTTTCACATCGT
TGCGCATTCCATGGGCGCATATCTGGCAGCGGTGTATGCACTACGATGCC
CACACAACGTCCTGACCCTCACACTCGCTAGTCCTGTTGGCCTGCCAGCG
GCACCGCCGCAGAAAATACCGGCGGGGCCGTTCATGCGTCGTGCTATTTT
CTGGATTGTGTTCAGATTGTGGGATCTAGGCTTCACGCCCCAGTACCTTA
TCCGTCACGCTGGCACCGGTCTTGGTCGCAGACTAGCCCATCGCTTTATT
GAGCCGCGTTTCCGCTTTCAGTCAGAGCACACTAAGCATGCTTTCGTTGA
GTATTTCTATCAAATTTCAGCTGCCGACGCCGCCGGGGAGCATTCACTGT
CTACTATTTTGGAAAGCGGCGCTTATGCACGCAAACCACTCGCGGAACGT
ATGGTAAATCTGCAGATCCCCACGTCGTTTTTATACGGTGATAGGGACTG
GATGAGTTCTCAGTACGCAGAGAAGGTTTGCGAACAAATGAAAGCCCCGG
CTTCAGTGCACATTGTTAAAGGAGCTGGTCACCACTTATACTACGATAAC
GCAAAAGCCTTCACCGAGCTAATATTGGAGAGCTGTAGTCGGGGACGAGA
AATCTCGGGATCATCATCATGTTCCGCAGACGTCAGGCAACCGATTTCCG
TGGCATGCAATTGA

Coding sequence (CDS) from alignment at ScGOVlb_1708:2634678..2635841+

>Gvermi6129.t1 ID=Gvermi6129.t1|Name=Gvermi6129.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1164bp|location=Sequence derived from alignment at ScGOVlb_1708:2634678..2635841+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCACACTGTCGCGCATTCTCCCCACCTTCCGTTTGTGCACCCC
TTGTGCCACCGCTTGTCCCTCTGGGCCGTTACCATGTCAGCGCCGCGAAG
CATTCTCCGCGCCTACACACGACACCCTCTCCACCGTAGAGGCCGCCGAG
TCGCTTTTGCTTCGCTTTCTTACCCGCGTGGAGTACACCAAACGGCGGGT
GGCGCTCCCATCGGGCCAGACGCTGAATATGCTGTCTGCAGGTGATGTCT
CCAAGCCGCCACTTGTCCTGTTGCATGGCTGGGGCGCAGGTCTGGCCTTC
TTCGGACGCAATATTGCCGGCCTAGCTCCGCACTACCGGCTTCACCTGCT
GGACTGGCCTGGCTTCGGCGCCAGTTCACGCCCGCATCATTCCACGGCGC
TGTCTGTGGATGACGCTGAAGCCTACTTTCTGGATGCCTTTGAAGCATGG
GTTGATTTCATGCGAGCGCAGGAGGCTTGTTTTGGCCGCTTTCACATCGT
TGCGCATTCCATGGGCGCATATCTGGCAGCGGTGTATGCACTACGATGCC
CACACAACGTCCTGACCCTCACACTCGCTAGTCCTGTTGGCCTGCCAGCG
GCACCGCCGCAGAAAATACCGGCGGGGCCGTTCATGCGTCGTGCTATTTT
CTGGATTGTGTTCAGATTGTGGGATCTAGGCTTCACGCCCCAGTACCTTA
TCCGTCACGCTGGCACCGGTCTTGGTCGCAGACTAGCCCATCGCTTTATT
GAGCCGCGTTTCCGCTTTCAGTCAGAGCACACTAAGCATGCTTTCGTTGA
GTATTTCTATCAAATTTCAGCTGCCGACGCCGCCGGGGAGCATTCACTGT
CTACTATTTTGGAAAGCGGCGCTTATGCACGCAAACCACTCGCGGAACGT
ATGGTAAATCTGCAGATCCCCACGTCGTTTTTATACGGTGATAGGGACTG
GATGAGTTCTCAGTACGCAGAGAAGGTTTGCGAACAAATGAAAGCCCCGG
CTTCAGTGCACATTGTTAAAGGAGCTGGTCACCACTTATACTACGATAAC
GCAAAAGCCTTCACCGAGCTAATATTGGAGAGCTGTAGTCGGGGACGAGA
AATCTCGGGATCATCATCATGTTCCGCAGACGTCAGGCAACCGATTTCCG
TGGCATGCAATTGA