Gvermi6088.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6088.t1
Unique NameGvermi6088.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:2141185..2142045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009348730.1
PFAMsCwf_Cwc_15
Max annot lvl35493|Streptophyta
KEGG koko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071007,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue1.65e-22
EggNOG OGsKOG3228@1|root,KOG3228@2759|Eukaryota,37RUK@33090|Viridiplantae,3GA9C@35493|Streptophyta,4JG4J@91835|fabids
DescriptionProtein CWC15 homolog
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6088Gvermi6088Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 2141185..2142045 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6088.t1.start1Gvermi6088.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 2141185..2141187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6088.t1.CDS1Gvermi6088.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 2141185..2142045 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6088.t1.exon1Gvermi6088.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 2141185..2142045 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6088.t1.stop1Gvermi6088.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 2142043..2142045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6088.t1Gvermi6088.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 2141185..2142045 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6088.t1 ID=Gvermi6088.t1|Name=Gvermi6088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=287bp
MTTAHRATWKAARGGLQEEGSFRLHAPSVAVSGKDAPTERTLKKRHFTPA
DASRDDMRLQIENEDAHESKRQRRSRFGPTPELDADADAQNSDTGQKLLL
HTEGVGAAASAGTENNPTPDGEDQNGAREHNDALKSGASIKATDDPSEGP
PFQHSEHSEQDSDDEDDESDEDEAELLAELERIRKEREFDRAKKQAEEHE
RLEREETSKAASENPLLGNLTKFNDEISETASVATGSVPAFAVRRRWDDD
VVFRNQARGERKQKPRFLNDTIRNDFHKRFMRQYMR*
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spliced messenger RNA

>Gvermi6088.t1 ID=Gvermi6088.t1|Name=Gvermi6088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_1708:2141185..2142045+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACTGCGCACCGAGCGACGTGGAAAGCAGCGCGCGGCGGTCTGCA
GGAGGAAGGGAGCTTCCGCCTCCACGCGCCGTCCGTTGCCGTCTCTGGAA
AGGACGCGCCGACGGAGCGAACGTTGAAGAAACGACATTTCACCCCAGCC
GATGCGTCGCGCGATGACATGCGTCTCCAGATTGAGAACGAAGACGCGCA
CGAAAGCAAAAGGCAGCGACGCTCGCGCTTCGGCCCCACTCCTGAACTTG
ATGCCGACGCGGACGCGCAGAATAGCGATACGGGTCAGAAGCTTCTACTA
CATACCGAGGGAGTGGGGGCCGCAGCAAGCGCAGGAACGGAGAACAACCC
AACTCCAGACGGCGAGGATCAAAATGGCGCCCGTGAGCACAACGATGCAC
TGAAGTCTGGAGCCTCGATAAAAGCAACCGATGACCCCAGCGAGGGCCCG
CCATTCCAACACTCCGAACACTCCGAACAAGACTCCGATGACGAGGACGA
CGAATCCGATGAAGACGAGGCTGAGCTGCTGGCAGAACTAGAGCGAATCC
GCAAGGAACGAGAGTTTGACAGGGCCAAGAAACAAGCCGAAGAGCACGAG
CGACTGGAACGGGAGGAAACCTCCAAAGCCGCGTCCGAAAACCCTTTACT
TGGCAACTTGACAAAGTTTAACGATGAAATTAGCGAGACGGCAAGCGTTG
CCACGGGAAGTGTGCCTGCTTTCGCTGTGCGGCGACGCTGGGACGATGAC
GTGGTGTTTCGCAATCAGGCGCGAGGGGAGCGCAAACAGAAACCCAGATT
CCTCAACGATACCATCCGGAACGACTTTCACAAGAGATTCATGAGGCAGT
ACATGCGGTAG
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protein sequence of Gvermi6088.t1

>Gvermi6088.t1 ID=Gvermi6088.t1|Name=Gvermi6088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bp
MTTAHRATWKAARGGLQEEGSFRLHAPSVAVSGKDAPTERTLKKRHFTPA
DASRDDMRLQIENEDAHESKRQRRSRFGPTPELDADADAQNSDTGQKLLL
HTEGVGAAASAGTENNPTPDGEDQNGAREHNDALKSGASIKATDDPSEGP
PFQHSEHSEQDSDDEDDESDEDEAELLAELERIRKEREFDRAKKQAEEHE
RLEREETSKAASENPLLGNLTKFNDEISETASVATGSVPAFAVRRRWDDD
VVFRNQARGERKQKPRFLNDTIRNDFHKRFMRQYMR*
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mRNA from alignment at ScGOVlb_1708:2141185..2142045+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6088.t1 ID=Gvermi6088.t1|Name=Gvermi6088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_1708:2141185..2142045+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGACTGCGCACCGAGCGACGTGGAAAGCAGCGCGCGGCGGTCTGCA
GGAGGAAGGGAGCTTCCGCCTCCACGCGCCGTCCGTTGCCGTCTCTGGAA
AGGACGCGCCGACGGAGCGAACGTTGAAGAAACGACATTTCACCCCAGCC
GATGCGTCGCGCGATGACATGCGTCTCCAGATTGAGAACGAAGACGCGCA
CGAAAGCAAAAGGCAGCGACGCTCGCGCTTCGGCCCCACTCCTGAACTTG
ATGCCGACGCGGACGCGCAGAATAGCGATACGGGTCAGAAGCTTCTACTA
CATACCGAGGGAGTGGGGGCCGCAGCAAGCGCAGGAACGGAGAACAACCC
AACTCCAGACGGCGAGGATCAAAATGGCGCCCGTGAGCACAACGATGCAC
TGAAGTCTGGAGCCTCGATAAAAGCAACCGATGACCCCAGCGAGGGCCCG
CCATTCCAACACTCCGAACACTCCGAACAAGACTCCGATGACGAGGACGA
CGAATCCGATGAAGACGAGGCTGAGCTGCTGGCAGAACTAGAGCGAATCC
GCAAGGAACGAGAGTTTGACAGGGCCAAGAAACAAGCCGAAGAGCACGAG
CGACTGGAACGGGAGGAAACCTCCAAAGCCGCGTCCGAAAACCCTTTACT
TGGCAACTTGACAAAGTTTAACGATGAAATTAGCGAGACGGCAAGCGTTG
CCACGGGAAGTGTGCCTGCTTTCGCTGTGCGGCGACGCTGGGACGATGAC
GTGGTGTTTCGCAATCAGGCGCGAGGGGAGCGCAAACAGAAACCCAGATT
CCTCAACGATACCATCCGGAACGACTTTCACAAGAGATTCATGAGGCAGT
ACATGCGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1708:2141185..2142045+

>Gvermi6088.t1 ID=Gvermi6088.t1|Name=Gvermi6088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=861bp|location=Sequence derived from alignment at ScGOVlb_1708:2141185..2142045+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGACTGCGCACCGAGCGACGTGGAAAGCAGCGCGCGGCGGTCTGCA
GGAGGAAGGGAGCTTCCGCCTCCACGCGCCGTCCGTTGCCGTCTCTGGAA
AGGACGCGCCGACGGAGCGAACGTTGAAGAAACGACATTTCACCCCAGCC
GATGCGTCGCGCGATGACATGCGTCTCCAGATTGAGAACGAAGACGCGCA
CGAAAGCAAAAGGCAGCGACGCTCGCGCTTCGGCCCCACTCCTGAACTTG
ATGCCGACGCGGACGCGCAGAATAGCGATACGGGTCAGAAGCTTCTACTA
CATACCGAGGGAGTGGGGGCCGCAGCAAGCGCAGGAACGGAGAACAACCC
AACTCCAGACGGCGAGGATCAAAATGGCGCCCGTGAGCACAACGATGCAC
TGAAGTCTGGAGCCTCGATAAAAGCAACCGATGACCCCAGCGAGGGCCCG
CCATTCCAACACTCCGAACACTCCGAACAAGACTCCGATGACGAGGACGA
CGAATCCGATGAAGACGAGGCTGAGCTGCTGGCAGAACTAGAGCGAATCC
GCAAGGAACGAGAGTTTGACAGGGCCAAGAAACAAGCCGAAGAGCACGAG
CGACTGGAACGGGAGGAAACCTCCAAAGCCGCGTCCGAAAACCCTTTACT
TGGCAACTTGACAAAGTTTAACGATGAAATTAGCGAGACGGCAAGCGTTG
CCACGGGAAGTGTGCCTGCTTTCGCTGTGCGGCGACGCTGGGACGATGAC
GTGGTGTTTCGCAATCAGGCGCGAGGGGAGCGCAAACAGAAACCCAGATT
CCTCAACGATACCATCCGGAACGACTTTCACAAGAGATTCATGAGGCAGT
ACATGCGGTAG
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