Gvermi6069.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6069.t1
Unique Name	Gvermi6069.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	474

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:2014016..2015437 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709265.1
Preferred name	kes1
PFAMs	Oxysterol_BP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05012,ko:K20465,ko:K22285
KEGG TC	2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8,2.D.1.1
GOs	GO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005496,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005933,GO:0005935,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0006810,GO:0006869,GO:0006887,GO:0006892,GO:0006897,GO:0006914,GO:0007163,GO:0008142,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009893,GO:0009987,GO:0010562,GO:0010876,GO:0010921,GO:0010922,GO:0012505,GO:0015248,GO:0015850,GO:0015918,GO:0016020,GO:0016043,GO:0016192,GO:0016237,GO:0019220,GO:0019222,GO:0019898,GO:0030011,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031984,GO:0032365,GO:0032934,GO:0032940,GO:0033036,GO:0034727,GO:0035091,GO:0035303,GO:0035306,GO:0035621,GO:0035627,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045937,GO:0046903,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0061024,GO:0061919,GO:0065007,GO:0065009,GO:0070273,GO:0070300,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0120009,GO:0120011,GO:1901564,GO:1901981,GO:1902936
Evalue	8.13e-97
EggNOG OGs	KOG2210@1\|root,KOG2210@2759\|Eukaryota
Description	lipid transport
COG category	P
BRITE	ko00000,ko02000,ko04040,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6069	Gvermi6069	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 2014016..2015437 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6069.t1.start1	Gvermi6069.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 2014016..2014018 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6069.t1.CDS1	Gvermi6069.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 2014016..2015437 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6069.t1.exon1	Gvermi6069.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 2014016..2015437 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6069.t1.stop1	Gvermi6069.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 2015435..2015437 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6069.t1	Gvermi6069.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 2014016..2015437 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:2014016..2015437+
coding sequence from alignment at ScGOVlb_1708:2014016..2015437+

mRNA sequence

>Gvermi6069.t1 ID=Gvermi6069.t1|Name=Gvermi6069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp
MPPPLTPPSPAPLSVDFISDEDAYFDARDTLSSSDRSSPRPPPMIPVRYS
RLEPLAPPQPPPDAELSLFKLAKEVLTSVSPGSDVTNINLPASILDPVST
LEKAKKSMQRGELLQDLCNCDDPEARLLNLIRFNLSGLAKERFGKKPYNP
ILGEVYRCAFAHKGNGGETLLVAEQVSHHPPITALHLHNDTLGFQLNSFT
APEPKFWGNSLEVKLRGEIRIVLSRYDDEEYVITRPYIYMSGFVAGRQRL
EFNGSSTFTCKKTGLGAVIDFHQVKGHLNARRDINAVSGRVFKLANNQTL
YTVEGHWDKKVHITCVSNGQQRVLIDYDAVVADKSMVAIRPPVEDEEPSF
STRVWADCSEAINNGDTAEANAQKRKVEDHQRRLKKERVANGVAWKYRYF
VDRDEGEGYELRPELRKMELVRLLLEPQEIEGLRSGELMKQMHAELMKKT
EESDVKERGGGRRRLLMRNRNKA*

spliced messenger RNA

>Gvermi6069.t1 ID=Gvermi6069.t1|Name=Gvermi6069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_1708:2014016..2015437+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCCCCCCTCACACCACCCAGCCCAGCGCCTCTCTCCGTTGACTT
CATCTCCGACGAGGACGCCTACTTTGACGCCCGCGATACCCTTTCGTCCT
CCGACCGTTCCTCACCACGCCCCCCCCCCATGATCCCTGTGCGCTACTCC
CGCCTCGAGCCGCTGGCCCCCCCGCAGCCGCCCCCCGACGCCGAGCTGTC
GCTGTTTAAGCTCGCCAAGGAGGTGCTCACCAGTGTCTCGCCCGGCTCCG
ACGTCACTAACATTAACCTGCCCGCTAGCATTCTGGACCCCGTCTCCACG
CTGGAGAAGGCCAAAAAGTCCATGCAGCGCGGCGAGCTGCTGCAGGATTT
GTGCAACTGTGACGACCCCGAGGCGCGTCTTCTCAACCTCATACGCTTCA
ATCTATCCGGGCTTGCCAAGGAGCGCTTCGGCAAGAAGCCGTACAACCCC
ATCCTGGGGGAGGTGTATCGCTGTGCCTTCGCGCACAAGGGCAACGGCGG
CGAGACGCTACTAGTGGCGGAGCAGGTTTCGCATCACCCCCCGATAACCG
CCCTGCATTTGCACAATGACACGCTTGGCTTTCAGTTAAACTCGTTCACG
GCGCCTGAGCCCAAGTTTTGGGGCAACAGCCTGGAGGTCAAGCTCCGCGG
AGAGATTCGAATCGTGCTCAGTCGCTATGACGATGAGGAGTATGTTATTA
CACGCCCTTATATTTACATGAGCGGCTTTGTGGCGGGCCGGCAACGCCTA
GAGTTCAATGGCTCCTCCACGTTCACTTGTAAGAAGACAGGACTCGGTGC
TGTGATCGATTTCCATCAGGTAAAGGGCCATCTCAATGCGCGGAGAGACA
TTAACGCCGTGAGTGGTCGCGTGTTCAAGCTTGCGAACAACCAAACTTTA
TACACGGTGGAGGGGCACTGGGATAAGAAAGTGCACATCACGTGCGTGAG
CAACGGGCAGCAACGTGTGCTTATTGACTATGACGCGGTTGTTGCCGACA
AGTCTATGGTGGCTATCCGTCCGCCGGTGGAAGACGAAGAGCCATCGTTC
AGCACACGTGTTTGGGCTGATTGCTCGGAAGCAATAAACAACGGGGACAC
TGCTGAGGCCAACGCGCAGAAACGCAAGGTGGAGGACCACCAAAGACGTC
TGAAGAAGGAGCGCGTGGCAAACGGGGTGGCATGGAAATATCGGTATTTT
GTCGACAGGGATGAGGGCGAAGGATATGAGCTGCGACCAGAACTACGGAA
AATGGAACTGGTGAGGCTATTGCTGGAGCCGCAAGAGATAGAGGGGCTAC
GATCTGGAGAGCTAATGAAGCAAATGCACGCGGAACTGATGAAGAAAACG
GAAGAAAGTGACGTCAAGGAACGTGGCGGTGGAAGAAGAAGGCTGTTGAT
GAGAAATCGAAACAAAGCGTGA

protein sequence of Gvermi6069.t1

>Gvermi6069.t1 ID=Gvermi6069.t1|Name=Gvermi6069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=474bp
MPPPLTPPSPAPLSVDFISDEDAYFDARDTLSSSDRSSPRPPPMIPVRYS
RLEPLAPPQPPPDAELSLFKLAKEVLTSVSPGSDVTNINLPASILDPVST
LEKAKKSMQRGELLQDLCNCDDPEARLLNLIRFNLSGLAKERFGKKPYNP
ILGEVYRCAFAHKGNGGETLLVAEQVSHHPPITALHLHNDTLGFQLNSFT
APEPKFWGNSLEVKLRGEIRIVLSRYDDEEYVITRPYIYMSGFVAGRQRL
EFNGSSTFTCKKTGLGAVIDFHQVKGHLNARRDINAVSGRVFKLANNQTL
YTVEGHWDKKVHITCVSNGQQRVLIDYDAVVADKSMVAIRPPVEDEEPSF
STRVWADCSEAINNGDTAEANAQKRKVEDHQRRLKKERVANGVAWKYRYF
VDRDEGEGYELRPELRKMELVRLLLEPQEIEGLRSGELMKQMHAELMKKT
EESDVKERGGGRRRLLMRNRNKA*

mRNA from alignment at ScGOVlb_1708:2014016..2015437+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6069.t1 ID=Gvermi6069.t1|Name=Gvermi6069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_1708:2014016..2015437+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCCCCCCTCACACCACCCAGCCCAGCGCCTCTCTCCGTTGACTT
CATCTCCGACGAGGACGCCTACTTTGACGCCCGCGATACCCTTTCGTCCT
CCGACCGTTCCTCACCACGCCCCCCCCCCATGATCCCTGTGCGCTACTCC
CGCCTCGAGCCGCTGGCCCCCCCGCAGCCGCCCCCCGACGCCGAGCTGTC
GCTGTTTAAGCTCGCCAAGGAGGTGCTCACCAGTGTCTCGCCCGGCTCCG
ACGTCACTAACATTAACCTGCCCGCTAGCATTCTGGACCCCGTCTCCACG
CTGGAGAAGGCCAAAAAGTCCATGCAGCGCGGCGAGCTGCTGCAGGATTT
GTGCAACTGTGACGACCCCGAGGCGCGTCTTCTCAACCTCATACGCTTCA
ATCTATCCGGGCTTGCCAAGGAGCGCTTCGGCAAGAAGCCGTACAACCCC
ATCCTGGGGGAGGTGTATCGCTGTGCCTTCGCGCACAAGGGCAACGGCGG
CGAGACGCTACTAGTGGCGGAGCAGGTTTCGCATCACCCCCCGATAACCG
CCCTGCATTTGCACAATGACACGCTTGGCTTTCAGTTAAACTCGTTCACG
GCGCCTGAGCCCAAGTTTTGGGGCAACAGCCTGGAGGTCAAGCTCCGCGG
AGAGATTCGAATCGTGCTCAGTCGCTATGACGATGAGGAGTATGTTATTA
CACGCCCTTATATTTACATGAGCGGCTTTGTGGCGGGCCGGCAACGCCTA
GAGTTCAATGGCTCCTCCACGTTCACTTGTAAGAAGACAGGACTCGGTGC
TGTGATCGATTTCCATCAGGTAAAGGGCCATCTCAATGCGCGGAGAGACA
TTAACGCCGTGAGTGGTCGCGTGTTCAAGCTTGCGAACAACCAAACTTTA
TACACGGTGGAGGGGCACTGGGATAAGAAAGTGCACATCACGTGCGTGAG
CAACGGGCAGCAACGTGTGCTTATTGACTATGACGCGGTTGTTGCCGACA
AGTCTATGGTGGCTATCCGTCCGCCGGTGGAAGACGAAGAGCCATCGTTC
AGCACACGTGTTTGGGCTGATTGCTCGGAAGCAATAAACAACGGGGACAC
TGCTGAGGCCAACGCGCAGAAACGCAAGGTGGAGGACCACCAAAGACGTC
TGAAGAAGGAGCGCGTGGCAAACGGGGTGGCATGGAAATATCGGTATTTT
GTCGACAGGGATGAGGGCGAAGGATATGAGCTGCGACCAGAACTACGGAA
AATGGAACTGGTGAGGCTATTGCTGGAGCCGCAAGAGATAGAGGGGCTAC
GATCTGGAGAGCTAATGAAGCAAATGCACGCGGAACTGATGAAGAAAACG
GAAGAAAGTGACGTCAAGGAACGTGGCGGTGGAAGAAGAAGGCTGTTGAT
GAGAAATCGAAACAAAGCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_1708:2014016..2015437+

>Gvermi6069.t1 ID=Gvermi6069.t1|Name=Gvermi6069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1422bp|location=Sequence derived from alignment at ScGOVlb_1708:2014016..2015437+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCCCCCCTCACACCACCCAGCCCAGCGCCTCTCTCCGTTGACTT
CATCTCCGACGAGGACGCCTACTTTGACGCCCGCGATACCCTTTCGTCCT
CCGACCGTTCCTCACCACGCCCCCCCCCCATGATCCCTGTGCGCTACTCC
CGCCTCGAGCCGCTGGCCCCCCCGCAGCCGCCCCCCGACGCCGAGCTGTC
GCTGTTTAAGCTCGCCAAGGAGGTGCTCACCAGTGTCTCGCCCGGCTCCG
ACGTCACTAACATTAACCTGCCCGCTAGCATTCTGGACCCCGTCTCCACG
CTGGAGAAGGCCAAAAAGTCCATGCAGCGCGGCGAGCTGCTGCAGGATTT
GTGCAACTGTGACGACCCCGAGGCGCGTCTTCTCAACCTCATACGCTTCA
ATCTATCCGGGCTTGCCAAGGAGCGCTTCGGCAAGAAGCCGTACAACCCC
ATCCTGGGGGAGGTGTATCGCTGTGCCTTCGCGCACAAGGGCAACGGCGG
CGAGACGCTACTAGTGGCGGAGCAGGTTTCGCATCACCCCCCGATAACCG
CCCTGCATTTGCACAATGACACGCTTGGCTTTCAGTTAAACTCGTTCACG
GCGCCTGAGCCCAAGTTTTGGGGCAACAGCCTGGAGGTCAAGCTCCGCGG
AGAGATTCGAATCGTGCTCAGTCGCTATGACGATGAGGAGTATGTTATTA
CACGCCCTTATATTTACATGAGCGGCTTTGTGGCGGGCCGGCAACGCCTA
GAGTTCAATGGCTCCTCCACGTTCACTTGTAAGAAGACAGGACTCGGTGC
TGTGATCGATTTCCATCAGGTAAAGGGCCATCTCAATGCGCGGAGAGACA
TTAACGCCGTGAGTGGTCGCGTGTTCAAGCTTGCGAACAACCAAACTTTA
TACACGGTGGAGGGGCACTGGGATAAGAAAGTGCACATCACGTGCGTGAG
CAACGGGCAGCAACGTGTGCTTATTGACTATGACGCGGTTGTTGCCGACA
AGTCTATGGTGGCTATCCGTCCGCCGGTGGAAGACGAAGAGCCATCGTTC
AGCACACGTGTTTGGGCTGATTGCTCGGAAGCAATAAACAACGGGGACAC
TGCTGAGGCCAACGCGCAGAAACGCAAGGTGGAGGACCACCAAAGACGTC
TGAAGAAGGAGCGCGTGGCAAACGGGGTGGCATGGAAATATCGGTATTTT
GTCGACAGGGATGAGGGCGAAGGATATGAGCTGCGACCAGAACTACGGAA
AATGGAACTGGTGAGGCTATTGCTGGAGCCGCAAGAGATAGAGGGGCTAC
GATCTGGAGAGCTAATGAAGCAAATGCACGCGGAACTGATGAAGAAAACG
GAAGAAAGTGACGTCAAGGAACGTGGCGGTGGAAGAAGAAGGCTGTTGAT
GAGAAATCGAAACAAAGCGTGA