Gvermi6066.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6066.t1
Unique NameGvermi6066.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:2001984..2002532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1449350.OCH239_06535
PFAMsOHCU_decarbox,Polysacc_deac_1
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00166,RC00300
KEGG koko:K01452
KEGG ReactionR02333
KEGG Pathwayko00520,ko01100,map00520,map01100
Evalue4.57e-56
EggNOG OGsCOG0726@1|root,COG3195@1|root,COG0726@2|Bacteria,COG3195@2|Bacteria,1MV3V@1224|Proteobacteria,2TR0I@28211|Alphaproteobacteria,4KMD9@93682|Roseivivax
EC3.5.1.41
DescriptionOHCU decarboxylase
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6066Gvermi6066Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 2001984..2002532 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6066.t1.start1Gvermi6066.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 2001984..2001986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6066.t1.CDS1Gvermi6066.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 2001984..2002532 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6066.t1.exon1Gvermi6066.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 2001984..2002532 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6066.t1.stop1Gvermi6066.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 2002530..2002532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6066.t1Gvermi6066.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 2001984..2002532 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6066.t1 ID=Gvermi6066.t1|Name=Gvermi6066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=183bp
MSESQFIEQFGTVFEHSPWVAQRSFSSVTSLHDNPADIHMILCRTFRNAT
GEERLNVLKAHSDLAGKLAKAKRLTKHSSEEQASAGLNALTDEQRQKFTT
LNQKYTEKHGFPFIIAVRNHTKQGILEAFERRLRNDSSVEMEEACKQVEA
IARWRIENIIRDYRHPNPKAQIDDKRKIQTKA*
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spliced messenger RNA

>Gvermi6066.t1 ID=Gvermi6066.t1|Name=Gvermi6066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp|location=Sequence derived from alignment at ScGOVlb_1708:2001984..2002532+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAATCTCAATTCATCGAACAGTTTGGAACAGTTTTTGAGCATTC
GCCGTGGGTGGCACAACGATCGTTTTCAAGCGTCACTTCACTACATGACA
ATCCAGCAGACATTCACATGATTCTGTGTCGAACATTTCGTAATGCCACG
GGAGAAGAACGGTTGAATGTACTCAAAGCGCATTCTGACTTAGCTGGCAA
ATTAGCAAAAGCCAAGCGTTTGACAAAACATAGTTCAGAAGAACAAGCAA
GTGCCGGACTAAACGCTCTAACTGATGAACAACGACAGAAATTTACAACA
CTGAATCAGAAATACACGGAGAAGCATGGTTTTCCGTTCATCATTGCTGT
CCGAAATCACACTAAGCAGGGCATTCTCGaagcgtttgagagacgactca
gaaacgattcgtcggtggagatggaagaggcatgcaaACAAGTAGAAGCA
ATCGCCCGTTGGCGGATTGAGAACATCATTCGAGATTATCGACATCCAAA
CCCGAAAGCCCAGATCGACGACAAGAGGAAAATACAAACAAAAGCATGA
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protein sequence of Gvermi6066.t1

>Gvermi6066.t1 ID=Gvermi6066.t1|Name=Gvermi6066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=183bp
MSESQFIEQFGTVFEHSPWVAQRSFSSVTSLHDNPADIHMILCRTFRNAT
GEERLNVLKAHSDLAGKLAKAKRLTKHSSEEQASAGLNALTDEQRQKFTT
LNQKYTEKHGFPFIIAVRNHTKQGILEAFERRLRNDSSVEMEEACKQVEA
IARWRIENIIRDYRHPNPKAQIDDKRKIQTKA*
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mRNA from alignment at ScGOVlb_1708:2001984..2002532+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6066.t1 ID=Gvermi6066.t1|Name=Gvermi6066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp|location=Sequence derived from alignment at ScGOVlb_1708:2001984..2002532+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGAATCTCAATTCATCGAACAGTTTGGAACAGTTTTTGAGCATTC
GCCGTGGGTGGCACAACGATCGTTTTCAAGCGTCACTTCACTACATGACA
ATCCAGCAGACATTCACATGATTCTGTGTCGAACATTTCGTAATGCCACG
GGAGAAGAACGGTTGAATGTACTCAAAGCGCATTCTGACTTAGCTGGCAA
ATTAGCAAAAGCCAAGCGTTTGACAAAACATAGTTCAGAAGAACAAGCAA
GTGCCGGACTAAACGCTCTAACTGATGAACAACGACAGAAATTTACAACA
CTGAATCAGAAATACACGGAGAAGCATGGTTTTCCGTTCATCATTGCTGT
CCGAAATCACACTAAGCAGGGCATTCTCGaagcgtttgagagacgactca
gaaacgattcgtcggtggagatggaagaggcatgcaaACAAGTAGAAGCA
ATCGCCCGTTGGCGGATTGAGAACATCATTCGAGATTATCGACATCCAAA
CCCGAAAGCCCAGATCGACGACAAGAGGAAAATACAAACAAAAGCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:2001984..2002532+

>Gvermi6066.t1 ID=Gvermi6066.t1|Name=Gvermi6066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=549bp|location=Sequence derived from alignment at ScGOVlb_1708:2001984..2002532+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGAATCTCAATTCATCGAACAGTTTGGAACAGTTTTTGAGCATTC
GCCGTGGGTGGCACAACGATCGTTTTCAAGCGTCACTTCACTACATGACA
ATCCAGCAGACATTCACATGATTCTGTGTCGAACATTTCGTAATGCCACG
GGAGAAGAACGGTTGAATGTACTCAAAGCGCATTCTGACTTAGCTGGCAA
ATTAGCAAAAGCCAAGCGTTTGACAAAACATAGTTCAGAAGAACAAGCAA
GTGCCGGACTAAACGCTCTAACTGATGAACAACGACAGAAATTTACAACA
CTGAATCAGAAATACACGGAGAAGCATGGTTTTCCGTTCATCATTGCTGT
CCGAAATCACACTAAGCAGGGCATTCTCGaagcgtttgagagacgactca
gaaacgattcgtcggtggagatggaagaggcatgcaaACAAGTAGAAGCA
ATCGCCCGTTGGCGGATTGAGAACATCATTCGAGATTATCGACATCCAAA
CCCGAAAGCCCAGATCGACGACAAGAGGAAAATACAAACAAAAGCATGA
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