Gvermi6052.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6052.t1
Unique NameGvermi6052.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1887665..1888933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706380.1
Preferred nameDPAGT1
PFAMsGlycos_transf_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00467
KEGG koko:K00749,ko:K01001,ko:K01183
KEGG ReactionR01206,R02334,R05969
KEGG Pathwayko00510,ko00520,ko01100,map00510,map00520,map01100
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0003975,GO:0003976,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006040,GO:0006047,GO:0006066,GO:0006091,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006491,GO:0006629,GO:0006644,GO:0006720,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009060,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0012505,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016093,GO:0016094,GO:0016740,GO:0016772,GO:0016780,GO:0019348,GO:0019408,GO:0019538,GO:0019637,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043541,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046165,GO:0046465,GO:0046483,GO:0051259,GO:0055086,GO:0055114,GO:0065003,GO:0070085,GO:0071704,GO:0071840,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Evalue4.44e-132
EggNOG OGsCOG0472@1|root,KOG2788@2759|Eukaryota
EC2.4.1.183,2.7.8.15,3.2.1.14
Descriptionphospho-N-acetylmuramoyl-pentapeptide-transferase activity
COG categoryM
CAZyGH18,GT5
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6052Gvermi6052Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1887665..1888933 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6052.t1.start1Gvermi6052.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1887665..1887667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6052.t1.CDS1Gvermi6052.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1887665..1888933 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6052.t1.exon1Gvermi6052.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1887665..1888933 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6052.t1.stop1Gvermi6052.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1888931..1888933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6052.t1Gvermi6052.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1887665..1888933 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6052.t1 ID=Gvermi6052.t1|Name=Gvermi6052.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MAPVVTAANAELVSPHSTRTNAAVRLRLFTLTIVVSVYAFACREAANVNL
LPRLLLSGLLSAASYAAVSYFTAVTVPLFLNAGMFGRDINKRGTEAGENR
IPEPLGLIPATVYIMILCVLHVYAHYNGDARLYTAAMACVTFMTLLGFAD
DVLDLRWRYKLVLPLIASMPLLVNYTGKTTVILPHFIRPFVGRVATLFGG
GLVHSVSGRLVDLSAGYYIYMAMLSIFCTNAINIYAGINGLEVGQSIVIA
LFVIIHNSLNLTSDVPKDNLQLLRDHHSFSLDMMLPFTAVCLGLISHNWY
PSAVFVGDTFCYFAGMTFAMGSILGHYSTTLLLLFIPQIFNFVYSLPQLF
GIVPCPRHRLPTYNKSTGRLEGVKSHLNLVNLVLLVTGPLHERTLCMLLL
VLQVVCCCFGLLARDVFLQHFS*
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spliced messenger RNA

>Gvermi6052.t1 ID=Gvermi6052.t1|Name=Gvermi6052.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1708:1887665..1888933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCTGTCGTAACGGCTGCAAACGCTGAGCTCGTTTCCCCGCACTC
TACGCGCACCAACGCTGCAGTCCGCCTGCGTCTGTTCACGCTGACGATCG
TCGTCTCCGTTTACGCGTTCGCCTGCAGAGAAGCTGCAAATGTAAACTTG
TTACCACGCCTGCTGCTGAGTGGCCTTCTGTCCGCCGCATCGTATGCCGC
CGTTTCTTACTTTACAGCCGTCACGGTCCCGCTCTTCCTCAACGCTGGCA
TGTTCGGAAGGGACATCAACAAGCGCGGCACGGAAGCGGGTGAGAACAGA
ATACCAGAGCCGCTCGGACTCATACCGGCCACCGTGTACATCATGATCCT
TTGCGTCCTGCATGTTTACGCGCATTACAACGGCGACGCTCGTCTGTACA
CCGCCGCTATGGCTTGCGTCACCTTCATGACGCTGCTGGGCTTTGCGGAC
GACGTGTTGGATCTGCGGTGGCGGTACAAGCTTGTGCTGCCACTCATCGC
CAGCATGCCGCTGCTTGTCAACTACACCGGCAAGACAACTGTCATTCTAC
CGCACTTCATCCGCCCTTTTGTTGGGCGCGTTGCAACATTATTTGGCGGC
GGCCTCGTGCACAGCGTGTCCGGCAGGTTGGTTGACCTCAGTGCGGGCTA
TTACATCTACATGGCCATGCTGAGCATCTTCTGCACAAACGCAATTAACA
TCTATGCCGGTATCAATGGGCTTGAGGTTGGACAGTCCATTGTCATTGCT
CTTTTCGTCATCATCCACAACTCACTCAACCTGACTTCGGATGTGCCCAA
GGACAACTTGCAGCTTCTTCGAGATCATCACTCGTTTTCTCTGGACATGA
TGCTTCCGTTCACCGCCGTATGTCTCGGGTTGATTTCTCACAACTGGTAC
CCATCGGCAGTGTTTGTGGGAGACACGTTTTGTTATTTTGCGGGAATGAC
GTTTGCAATGGGCAGTATCCTGGGTCACTACTCAACCACGTTGCTGCTGT
TGTTCATCCCGCAGATCTTCAACTTTGTCTACTCATTGCCCCAATTGTTT
GGCATTGTGCCGTGCCCGAGGCATCGTCTTCCAACGTATAACAAGAGCAC
GGGGCGTTTGGAAGGAGTCAAGTCTCACCTTAATCTCGTCAACCTTGTGC
TTTTGGTGACAGGCCCCCTTCACGAAAGGACTCTTTGTATGCTTCTGCTA
GTCCTACAGGTTGTGTGCTGTTGTTTCGGATTGCTCGCTCGTGATGTTTT
TCTGCAGCACTTTTCATAG
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protein sequence of Gvermi6052.t1

>Gvermi6052.t1 ID=Gvermi6052.t1|Name=Gvermi6052.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MAPVVTAANAELVSPHSTRTNAAVRLRLFTLTIVVSVYAFACREAANVNL
LPRLLLSGLLSAASYAAVSYFTAVTVPLFLNAGMFGRDINKRGTEAGENR
IPEPLGLIPATVYIMILCVLHVYAHYNGDARLYTAAMACVTFMTLLGFAD
DVLDLRWRYKLVLPLIASMPLLVNYTGKTTVILPHFIRPFVGRVATLFGG
GLVHSVSGRLVDLSAGYYIYMAMLSIFCTNAINIYAGINGLEVGQSIVIA
LFVIIHNSLNLTSDVPKDNLQLLRDHHSFSLDMMLPFTAVCLGLISHNWY
PSAVFVGDTFCYFAGMTFAMGSILGHYSTTLLLLFIPQIFNFVYSLPQLF
GIVPCPRHRLPTYNKSTGRLEGVKSHLNLVNLVLLVTGPLHERTLCMLLL
VLQVVCCCFGLLARDVFLQHFS*
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mRNA from alignment at ScGOVlb_1708:1887665..1888933+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6052.t1 ID=Gvermi6052.t1|Name=Gvermi6052.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1708:1887665..1888933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCTGTCGTAACGGCTGCAAACGCTGAGCTCGTTTCCCCGCACTC
TACGCGCACCAACGCTGCAGTCCGCCTGCGTCTGTTCACGCTGACGATCG
TCGTCTCCGTTTACGCGTTCGCCTGCAGAGAAGCTGCAAATGTAAACTTG
TTACCACGCCTGCTGCTGAGTGGCCTTCTGTCCGCCGCATCGTATGCCGC
CGTTTCTTACTTTACAGCCGTCACGGTCCCGCTCTTCCTCAACGCTGGCA
TGTTCGGAAGGGACATCAACAAGCGCGGCACGGAAGCGGGTGAGAACAGA
ATACCAGAGCCGCTCGGACTCATACCGGCCACCGTGTACATCATGATCCT
TTGCGTCCTGCATGTTTACGCGCATTACAACGGCGACGCTCGTCTGTACA
CCGCCGCTATGGCTTGCGTCACCTTCATGACGCTGCTGGGCTTTGCGGAC
GACGTGTTGGATCTGCGGTGGCGGTACAAGCTTGTGCTGCCACTCATCGC
CAGCATGCCGCTGCTTGTCAACTACACCGGCAAGACAACTGTCATTCTAC
CGCACTTCATCCGCCCTTTTGTTGGGCGCGTTGCAACATTATTTGGCGGC
GGCCTCGTGCACAGCGTGTCCGGCAGGTTGGTTGACCTCAGTGCGGGCTA
TTACATCTACATGGCCATGCTGAGCATCTTCTGCACAAACGCAATTAACA
TCTATGCCGGTATCAATGGGCTTGAGGTTGGACAGTCCATTGTCATTGCT
CTTTTCGTCATCATCCACAACTCACTCAACCTGACTTCGGATGTGCCCAA
GGACAACTTGCAGCTTCTTCGAGATCATCACTCGTTTTCTCTGGACATGA
TGCTTCCGTTCACCGCCGTATGTCTCGGGTTGATTTCTCACAACTGGTAC
CCATCGGCAGTGTTTGTGGGAGACACGTTTTGTTATTTTGCGGGAATGAC
GTTTGCAATGGGCAGTATCCTGGGTCACTACTCAACCACGTTGCTGCTGT
TGTTCATCCCGCAGATCTTCAACTTTGTCTACTCATTGCCCCAATTGTTT
GGCATTGTGCCGTGCCCGAGGCATCGTCTTCCAACGTATAACAAGAGCAC
GGGGCGTTTGGAAGGAGTCAAGTCTCACCTTAATCTCGTCAACCTTGTGC
TTTTGGTGACAGGCCCCCTTCACGAAAGGACTCTTTGTATGCTTCTGCTA
GTCCTACAGGTTGTGTGCTGTTGTTTCGGATTGCTCGCTCGTGATGTTTT
TCTGCAGCACTTTTCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_1708:1887665..1888933+

>Gvermi6052.t1 ID=Gvermi6052.t1|Name=Gvermi6052.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1708:1887665..1888933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCTGTCGTAACGGCTGCAAACGCTGAGCTCGTTTCCCCGCACTC
TACGCGCACCAACGCTGCAGTCCGCCTGCGTCTGTTCACGCTGACGATCG
TCGTCTCCGTTTACGCGTTCGCCTGCAGAGAAGCTGCAAATGTAAACTTG
TTACCACGCCTGCTGCTGAGTGGCCTTCTGTCCGCCGCATCGTATGCCGC
CGTTTCTTACTTTACAGCCGTCACGGTCCCGCTCTTCCTCAACGCTGGCA
TGTTCGGAAGGGACATCAACAAGCGCGGCACGGAAGCGGGTGAGAACAGA
ATACCAGAGCCGCTCGGACTCATACCGGCCACCGTGTACATCATGATCCT
TTGCGTCCTGCATGTTTACGCGCATTACAACGGCGACGCTCGTCTGTACA
CCGCCGCTATGGCTTGCGTCACCTTCATGACGCTGCTGGGCTTTGCGGAC
GACGTGTTGGATCTGCGGTGGCGGTACAAGCTTGTGCTGCCACTCATCGC
CAGCATGCCGCTGCTTGTCAACTACACCGGCAAGACAACTGTCATTCTAC
CGCACTTCATCCGCCCTTTTGTTGGGCGCGTTGCAACATTATTTGGCGGC
GGCCTCGTGCACAGCGTGTCCGGCAGGTTGGTTGACCTCAGTGCGGGCTA
TTACATCTACATGGCCATGCTGAGCATCTTCTGCACAAACGCAATTAACA
TCTATGCCGGTATCAATGGGCTTGAGGTTGGACAGTCCATTGTCATTGCT
CTTTTCGTCATCATCCACAACTCACTCAACCTGACTTCGGATGTGCCCAA
GGACAACTTGCAGCTTCTTCGAGATCATCACTCGTTTTCTCTGGACATGA
TGCTTCCGTTCACCGCCGTATGTCTCGGGTTGATTTCTCACAACTGGTAC
CCATCGGCAGTGTTTGTGGGAGACACGTTTTGTTATTTTGCGGGAATGAC
GTTTGCAATGGGCAGTATCCTGGGTCACTACTCAACCACGTTGCTGCTGT
TGTTCATCCCGCAGATCTTCAACTTTGTCTACTCATTGCCCCAATTGTTT
GGCATTGTGCCGTGCCCGAGGCATCGTCTTCCAACGTATAACAAGAGCAC
GGGGCGTTTGGAAGGAGTCAAGTCTCACCTTAATCTCGTCAACCTTGTGC
TTTTGGTGACAGGCCCCCTTCACGAAAGGACTCTTTGTATGCTTCTGCTA
GTCCTACAGGTTGTGTGCTGTTGTTTCGGATTGCTCGCTCGTGATGTTTT
TCTGCAGCACTTTTCATAG
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