Gvermi6032.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6032.t1
Unique NameGvermi6032.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1830631..1831281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703056.1
Preferred nameYAF9
PFAMsYEATS
Max annot lvl2759|Eukaryota
KEGG koko:K11341
GOsGO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031056,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034728,GO:0035065,GO:0035267,GO:0036211,GO:0040029,GO:0040034,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043981,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048506,GO:0048509,GO:0048510,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090239,GO:0090304,GO:0097346,GO:1901360,GO:1901564,GO:1901983,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2001141
Evalue7.82e-53
EggNOG OGsCOG5033@1|root,KOG3149@2759|Eukaryota
Descriptionchromatin organization
COG categoryK
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6032Gvermi6032Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1830631..1831281 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6032.t1.stop1Gvermi6032.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1830631..1830633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6032.t1.CDS1Gvermi6032.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1830631..1831281 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6032.t1.exon1Gvermi6032.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1830631..1831281 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6032.t1.start1Gvermi6032.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1831279..1831281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6032.t1Gvermi6032.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1830631..1831281 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6032.t1 ID=Gvermi6032.t1|Name=Gvermi6032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=217bp
MKRVKGVNLHIPIVHGSYAKHLGDKGTESRSHEWTVYLRPLQPADLSHFI
RHVEFVLHESFEPQVRRVTDMPYEVQAYGWGEFEIIIRVFFQDASEKPVE
FFHPLRLFENLGEPSPDPVISEHYDEFVFQDPPEALHELLKTIPHGPNLR
IKQPSHPIPAYFKDFSGAESADLRKLEHARRKLREETTKRQSRYEELEEE
RADLVRQITTLGGRIS*
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spliced messenger RNA

>Gvermi6032.t1 ID=Gvermi6032.t1|Name=Gvermi6032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_1708:1830631..1831281- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCGTCAAGGGCGTCAATCTTCACATTCCTATCGTTCATGGGTC
CTACGCGAAACACCTCGGAGATAAAGGCACGGAATCACGGAGTCATGAAT
GGACAGTTTACCTGAGACCCTTGCAACCGGCTGATCTTTCACACTTTATT
CGCCATGTGGAGTTCGTTCTCCACGAGTCATTTGAACCTCAGGTTCGTCG
TGTGACGGACATGCCTTACGAAGTTCAGGCGTATGGATGGGGTGAGTTTG
AGATTATTATAAGAGTATTCTTTCAAGATGCTTCAGAAAAGCCCGTTGAG
TTTTTTCATCCGTTGCGCCTCTTTGAGAACTTGGGCGAGCCTTCACCAGA
TCCCGTCATTTCTGAGCATTACGATGAATTCGTGTTCCAAGACCCCCCAG
AAGCCCTACATGAGTTGCTGAAGACAATACCTCATGGTCCCAATTTGAGA
ATTAAGCAACCATCCCACCCAATACCAGCTTATTTCAAGGACTTCAGTGG
AGCCGAAAGTGCTGATCTGAGAAAACTCGAACACGCAAGACGCAAATTGC
GGGAAGAGACCACAAAGCGCCAGTCGCGTTATGAAGAGCTTGAAGAGGAA
CGAGCGGACCTTGTACGACAAATAACTACCCTGGGCGGTCGAATTTCGTA
G
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protein sequence of Gvermi6032.t1

>Gvermi6032.t1 ID=Gvermi6032.t1|Name=Gvermi6032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MKRVKGVNLHIPIVHGSYAKHLGDKGTESRSHEWTVYLRPLQPADLSHFI
RHVEFVLHESFEPQVRRVTDMPYEVQAYGWGEFEIIIRVFFQDASEKPVE
FFHPLRLFENLGEPSPDPVISEHYDEFVFQDPPEALHELLKTIPHGPNLR
IKQPSHPIPAYFKDFSGAESADLRKLEHARRKLREETTKRQSRYEELEEE
RADLVRQITTLGGRIS*
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mRNA from alignment at ScGOVlb_1708:1830631..1831281-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6032.t1 ID=Gvermi6032.t1|Name=Gvermi6032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_1708:1830631..1831281- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCGCGTCAAGGGCGTCAATCTTCACATTCCTATCGTTCATGGGTC
CTACGCGAAACACCTCGGAGATAAAGGCACGGAATCACGGAGTCATGAAT
GGACAGTTTACCTGAGACCCTTGCAACCGGCTGATCTTTCACACTTTATT
CGCCATGTGGAGTTCGTTCTCCACGAGTCATTTGAACCTCAGGTTCGTCG
TGTGACGGACATGCCTTACGAAGTTCAGGCGTATGGATGGGGTGAGTTTG
AGATTATTATAAGAGTATTCTTTCAAGATGCTTCAGAAAAGCCCGTTGAG
TTTTTTCATCCGTTGCGCCTCTTTGAGAACTTGGGCGAGCCTTCACCAGA
TCCCGTCATTTCTGAGCATTACGATGAATTCGTGTTCCAAGACCCCCCAG
AAGCCCTACATGAGTTGCTGAAGACAATACCTCATGGTCCCAATTTGAGA
ATTAAGCAACCATCCCACCCAATACCAGCTTATTTCAAGGACTTCAGTGG
AGCCGAAAGTGCTGATCTGAGAAAACTCGAACACGCAAGACGCAAATTGC
GGGAAGAGACCACAAAGCGCCAGTCGCGTTATGAAGAGCTTGAAGAGGAA
CGAGCGGACCTTGTACGACAAATAACTACCCTGGGCGGTCGAATTTCGTA
G
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Coding sequence (CDS) from alignment at ScGOVlb_1708:1830631..1831281-

>Gvermi6032.t1 ID=Gvermi6032.t1|Name=Gvermi6032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=651bp|location=Sequence derived from alignment at ScGOVlb_1708:1830631..1831281- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCGCGTCAAGGGCGTCAATCTTCACATTCCTATCGTTCATGGGTC
CTACGCGAAACACCTCGGAGATAAAGGCACGGAATCACGGAGTCATGAAT
GGACAGTTTACCTGAGACCCTTGCAACCGGCTGATCTTTCACACTTTATT
CGCCATGTGGAGTTCGTTCTCCACGAGTCATTTGAACCTCAGGTTCGTCG
TGTGACGGACATGCCTTACGAAGTTCAGGCGTATGGATGGGGTGAGTTTG
AGATTATTATAAGAGTATTCTTTCAAGATGCTTCAGAAAAGCCCGTTGAG
TTTTTTCATCCGTTGCGCCTCTTTGAGAACTTGGGCGAGCCTTCACCAGA
TCCCGTCATTTCTGAGCATTACGATGAATTCGTGTTCCAAGACCCCCCAG
AAGCCCTACATGAGTTGCTGAAGACAATACCTCATGGTCCCAATTTGAGA
ATTAAGCAACCATCCCACCCAATACCAGCTTATTTCAAGGACTTCAGTGG
AGCCGAAAGTGCTGATCTGAGAAAACTCGAACACGCAAGACGCAAATTGC
GGGAAGAGACCACAAAGCGCCAGTCGCGTTATGAAGAGCTTGAAGAGGAA
CGAGCGGACCTTGTACGACAAATAACTACCCTGGGCGGTCGAATTTCGTA
G
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