Gvermi6021.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6021.t1
Unique NameGvermi6021.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1802135..1803702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708998.1
PFAMsADK,DUF4821
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Evalue8.63e-76
EggNOG OGsCOG0563@1|root,KOG3078@2759|Eukaryota
EC2.7.4.3
Descriptionadenylate kinase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6021Gvermi6021Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1802135..1803702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6021.t1Gvermi6021.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1802135..1803702 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6021.t1.stop1Gvermi6021.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1802135..1802137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6021.t1.CDS1Gvermi6021.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1802135..1802319 -
Gvermi6021.t1.CDS2Gvermi6021.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1802412..1803702 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6021.t1.exon1Gvermi6021.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1802135..1802319 -
Gvermi6021.t1.exon2Gvermi6021.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1802412..1803702 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6021.t1.intron1Gvermi6021.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1708 1802320..1802411 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6021.t1.start1Gvermi6021.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1803700..1803702 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6021.t1 ID=Gvermi6021.t1|Name=Gvermi6021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp
MAFVAPFAQPSCVRRSEPRVARSLSSTKFLPRPNPRAQSWSHALRPRGTP
PLVVKSPFCTSMTVTPTPKILISGAPASGKGTQCEFIVEKYGVVHISTGD
MLRAAVRNASMLGLKAKSYMDSGELVPDDLVISMLRERITQPDCVEKGWL
LDGFPRTAVQAQALDDVGIHPTAVIVLEVEDDVLIERVVGRRSDPQTGKI
YHMTFSPPTDPQVAARLVQRSDDTEEKARVRLKTYYTHAQSINNHYGAVL
NKVNGNRSKDAVFEDLSTIIDSSVASAKKDIESGDTVGYGSTSTSSSQYM
PVAEFVRRAEEAYERGVLRDEDVNWSGQATVDVPGFAGTSSYADLGRRLD
LVIGDTAALITFAYIGRYSHGMTSFDVGVLKTAAPFLSAWFVTSPLLGAY
TRAATANLSDTLKYFLRAWAIAMPMGIGLRGVLTDHVPPAAFAVISLVAT
FVLMGSWRAVYVVARGEETENARRGGIFETFKMVTTLLRRW*
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spliced messenger RNA

>Gvermi6021.t1 ID=Gvermi6021.t1|Name=Gvermi6021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at ScGOVlb_1708:1802135..1803702- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTTGCCCCTTTTGCCCAGCCCAGTTGTGTGCGTCGTTCCGA
ACCGAGAGTTGCTCGCAGCCTGAGCTCTACAAAGTTCCTTCCCCGACCAA
ATCCCCGAGCCCAATCCTGGTCCCACGCCCTTCGTCCGCGAGGAACGCCG
CCTCTAGTAGTCAAATCACCCTTTTGCACATCCATGACTGTCACCCCGAC
TCCCAAGATCCTAATTTCGGGTGCTCCGGCTTCTGGAAAGGGGACACAGT
GCGAGTTCATTGTGGAAAAGTATGGAGTCGTTCATATCTCTACTGGGGAT
ATGTTGCGAGCGGCAGTGCGGAACGCATCAATGTTGGGTCTGAAAGCCAA
ATCCTACATGGATTCGGGCGAGCTGGTTCCAGATGATCTCGTTATTTCCA
TGTTACGAGAGCGAATTACCCAACCGGACTGCGTCGAAAAGGGATGGTTG
CTGGACGGGTTTCCACGAACAGCCGTCCAAGCTCAAGCTCTGGACGACGT
CGGTATACACCCCACGGCAGTAATTGTGCTTGAAGTGGAGGACGATGTGC
TCATTGAACGCGTTGTCGGACGCCGTTCTGACCCGCAAACTGGAAAAATT
TATCACATGACCTTTAGCCCGCCAACAGATCCACAAGTAGCGGCCCGCCT
CGTACAGCGCTCGGATGACACTGAAGAAAAGGCAAGAGTACGCCTCAAGA
CGTACTACACACATGCCCAGTCCATCAACAATCACTACGGTGCAGTTTTG
AACAAAGTGAATGGGAATCGCAGCAAAGATGCAGTCTTTGAAGATTTGAG
CACAATTATAGACTCTTCCGTTGCTTCTGCGAAGAAGGATATCGAATCAG
GCGATACGGTAGGATATGGTAGCACCTCTACAAGTTCTTCCCAGTACATG
CCGGTTGCAGAATTTGTTAGACGTGCTGAAGAAGCCTACGAACGTGGTGT
GCTACGCGATGAAGACGTCAATTGGAGTGGTCAGGCCACAGTGGATGTTC
CTGGATTCGCAGGAACGTCAAGTTATGCCGACTTGGGCCGTCGTCTTGAC
CTCGTGATTGGTGACACTGCTGCACTGATAACGTTTGCCTACATAGGCCG
CTATTCCCACGGCATGACGTCATTTGATGTTGGCGTTCTGAAGACAGCTG
CACCTTTCCTTTCTGCGTGGTTTGTCACATCCCCTCTGCTTGGCGCTTAT
ACCAGGGCGGCTACTGCCAATCTATCCGACACGCTCAAGTACTTTCTAAG
AGCTTGGGCAATTGCGATGCCCATGGGCATTGGTCTTAGAGGTGTCCTTA
CAGATCATGTACCCCCCGCTGCCTTTGCAGTTATATCTCTAGTTGCAACA
TTCGTTTTGATGGGATCGTGGAGAGCTGTATACGTTGTTGCACGCGGAGA
AGAAACTGAAAATGCGAGAAGAGGAGGCATTTTTGAAACATTTAAGATGG
TTACAACGCTTCTGAGACGGTGGTAA
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protein sequence of Gvermi6021.t1

>Gvermi6021.t1 ID=Gvermi6021.t1|Name=Gvermi6021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=492bp
MAFVAPFAQPSCVRRSEPRVARSLSSTKFLPRPNPRAQSWSHALRPRGTP
PLVVKSPFCTSMTVTPTPKILISGAPASGKGTQCEFIVEKYGVVHISTGD
MLRAAVRNASMLGLKAKSYMDSGELVPDDLVISMLRERITQPDCVEKGWL
LDGFPRTAVQAQALDDVGIHPTAVIVLEVEDDVLIERVVGRRSDPQTGKI
YHMTFSPPTDPQVAARLVQRSDDTEEKARVRLKTYYTHAQSINNHYGAVL
NKVNGNRSKDAVFEDLSTIIDSSVASAKKDIESGDTVGYGSTSTSSSQYM
PVAEFVRRAEEAYERGVLRDEDVNWSGQATVDVPGFAGTSSYADLGRRLD
LVIGDTAALITFAYIGRYSHGMTSFDVGVLKTAAPFLSAWFVTSPLLGAY
TRAATANLSDTLKYFLRAWAIAMPMGIGLRGVLTDHVPPAAFAVISLVAT
FVLMGSWRAVYVVARGEETENARRGGIFETFKMVTTLLRRW*
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mRNA from alignment at ScGOVlb_1708:1802135..1803702-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6021.t1 ID=Gvermi6021.t1|Name=Gvermi6021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1568bp|location=Sequence derived from alignment at ScGOVlb_1708:1802135..1803702- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCGTTGCCCCTTTTGCCCAGCCCAGTTGTGTGCGTCGTTCCGA
ACCGAGAGTTGCTCGCAGCCTGAGCTCTACAAAGTTCCTTCCCCGACCAA
ATCCCCGAGCCCAATCCTGGTCCCACGCCCTTCGTCCGCGAGGAACGCCG
CCTCTAGTAGTCAAATCACCCTTTTGCACATCCATGACTGTCACCCCGAC
TCCCAAGATCCTAATTTCGGGTGCTCCGGCTTCTGGAAAGGGGACACAGT
GCGAGTTCATTGTGGAAAAGTATGGAGTCGTTCATATCTCTACTGGGGAT
ATGTTGCGAGCGGCAGTGCGGAACGCATCAATGTTGGGTCTGAAAGCCAA
ATCCTACATGGATTCGGGCGAGCTGGTTCCAGATGATCTCGTTATTTCCA
TGTTACGAGAGCGAATTACCCAACCGGACTGCGTCGAAAAGGGATGGTTG
CTGGACGGGTTTCCACGAACAGCCGTCCAAGCTCAAGCTCTGGACGACGT
CGGTATACACCCCACGGCAGTAATTGTGCTTGAAGTGGAGGACGATGTGC
TCATTGAACGCGTTGTCGGACGCCGTTCTGACCCGCAAACTGGAAAAATT
TATCACATGACCTTTAGCCCGCCAACAGATCCACAAGTAGCGGCCCGCCT
CGTACAGCGCTCGGATGACACTGAAGAAAAGGCAAGAGTACGCCTCAAGA
CGTACTACACACATGCCCAGTCCATCAACAATCACTACGGTGCAGTTTTG
AACAAAGTGAATGGGAATCGCAGCAAAGATGCAGTCTTTGAAGATTTGAG
CACAATTATAGACTCTTCCGTTGCTTCTGCGAAGAAGGATATCGAATCAG
GCGATACGGTAGGATATGGTAGCACCTCTACAAGTTCTTCCCAGTACATG
CCGGTTGCAGAATTTGTTAGACGTGCTGAAGAAGCCTACGAACGTGGTGT
GCTACGCGATGAAGACGTCAATTGGAGTGGTCAGGCCACAGTGGATGTTC
CTGGATTCGCAGGAACGTCAAGTTATGCCGACTTGGGCCGTCGTCTTGAC
CTCGTGATTGGTGACACTGCTGCACTGATAACGTTTGCCTACATAGGCCG
CTATTCCCACGGCATGACGTCATTTGATGTTGGCGTTCTGAAGACAGCTG
CACCTTTCCTTTCTGCGTGGTTTGTCACATCCCCTCTGCTTGGCGCTTAT
ACCAGGGCGGCTACTGCCAATCTATCCGACACGCTCAAGTACTTTCTAAG
AGCTTGGGCAATTGCGATGCCCATGGGCATTGGTCTTAGAGGTAAGTTAT
GGAAAGTTCTTCATGTGCTTTTTGTTCAGATTCTAATTCTAATCGTTATC
GTACTTTCTGCGGATGTATTGCTGATCCCACAGGTGTCCTTACAGATCAT
GTACCCCCCGCTGCCTTTGCAGTTATATCTCTAGTTGCAACATTCGTTTT
GATGGGATCGTGGAGAGCTGTATACGTTGTTGCACGCGGAGAAGAAACTG
AAAATGCGAGAAGAGGAGGCATTTTTGAAACATTTAAGATGGTTACAACG
CTTCTGAGACGGTGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:1802135..1803702-

>Gvermi6021.t1 ID=Gvermi6021.t1|Name=Gvermi6021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1476bp|location=Sequence derived from alignment at ScGOVlb_1708:1802135..1803702- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCGTTGCCCCTTTTGCCCAGCCCAGTTGTGTGCGTCGTTCCGA
ACCGAGAGTTGCTCGCAGCCTGAGCTCTACAAAGTTCCTTCCCCGACCAA
ATCCCCGAGCCCAATCCTGGTCCCACGCCCTTCGTCCGCGAGGAACGCCG
CCTCTAGTAGTCAAATCACCCTTTTGCACATCCATGACTGTCACCCCGAC
TCCCAAGATCCTAATTTCGGGTGCTCCGGCTTCTGGAAAGGGGACACAGT
GCGAGTTCATTGTGGAAAAGTATGGAGTCGTTCATATCTCTACTGGGGAT
ATGTTGCGAGCGGCAGTGCGGAACGCATCAATGTTGGGTCTGAAAGCCAA
ATCCTACATGGATTCGGGCGAGCTGGTTCCAGATGATCTCGTTATTTCCA
TGTTACGAGAGCGAATTACCCAACCGGACTGCGTCGAAAAGGGATGGTTG
CTGGACGGGTTTCCACGAACAGCCGTCCAAGCTCAAGCTCTGGACGACGT
CGGTATACACCCCACGGCAGTAATTGTGCTTGAAGTGGAGGACGATGTGC
TCATTGAACGCGTTGTCGGACGCCGTTCTGACCCGCAAACTGGAAAAATT
TATCACATGACCTTTAGCCCGCCAACAGATCCACAAGTAGCGGCCCGCCT
CGTACAGCGCTCGGATGACACTGAAGAAAAGGCAAGAGTACGCCTCAAGA
CGTACTACACACATGCCCAGTCCATCAACAATCACTACGGTGCAGTTTTG
AACAAAGTGAATGGGAATCGCAGCAAAGATGCAGTCTTTGAAGATTTGAG
CACAATTATAGACTCTTCCGTTGCTTCTGCGAAGAAGGATATCGAATCAG
GCGATACGGTAGGATATGGTAGCACCTCTACAAGTTCTTCCCAGTACATG
CCGGTTGCAGAATTTGTTAGACGTGCTGAAGAAGCCTACGAACGTGGTGT
GCTACGCGATGAAGACGTCAATTGGAGTGGTCAGGCCACAGTGGATGTTC
CTGGATTCGCAGGAACGTCAAGTTATGCCGACTTGGGCCGTCGTCTTGAC
CTCGTGATTGGTGACACTGCTGCACTGATAACGTTTGCCTACATAGGCCG
CTATTCCCACGGCATGACGTCATTTGATGTTGGCGTTCTGAAGACAGCTG
CACCTTTCCTTTCTGCGTGGTTTGTCACATCCCCTCTGCTTGGCGCTTAT
ACCAGGGCGGCTACTGCCAATCTATCCGACACGCTCAAGTACTTTCTAAG
AGCTTGGGCAATTGCGATGCCCATGGGCATTGGTCTTAGAGGTGTCCTTA
CAGATCATGTACCCCCCGCTGCCTTTGCAGTTATATCTCTAGTTGCAACA
TTCGTTTTGATGGGATCGTGGAGAGCTGTATACGTTGTTGCACGCGGAGA
AGAAACTGAAAATGCGAGAAGAGGAGGCATTTTTGAAACATTTAAGATGG
TTACAACGCTTCTGAGACGGTGGTAA
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