Gvermi5984.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5984.t1
Unique NameGvermi5984.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1711892..1712578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123279.ATUS01000005_gene3240
Preferred namecysC
PFAMsAPS_kinase,ATP-sulfurylase,PUA_2
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K00860,ko:K00958
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176,M00596
Evalue7.61e-88
EggNOG OGsCOG0529@1|root,COG0529@2|Bacteria,1MX0D@1224|Proteobacteria,1RNWT@1236|Gammaproteobacteria,1J5Y1@118884|unclassified Gammaproteobacteria
EC2.7.1.25,2.7.7.4
DescriptionCatalyzes the synthesis of activated sulfate
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5984Gvermi5984Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1711892..1712578 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5984.t1.start1Gvermi5984.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1711892..1711894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5984.t1.CDS1Gvermi5984.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1711892..1712578 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5984.t1.exon1Gvermi5984.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1711892..1712578 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5984.t1.stop1Gvermi5984.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1712576..1712578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5984.t1Gvermi5984.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1711892..1712578 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5984.t1 ID=Gvermi5984.t1|Name=Gvermi5984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=229bp
MPTATNIMWHDGAITKEHRYAMLNQRGATVWLTGLSGSGKSTVSVALEQM
MFKKGYLVYRLDGDNIRFGLNSNLGFSAEDRKENIRRISEVAKLMADVGV
ITTSAFISPYIADRQVARQIHEKAGIPFVEVYVDVPLEVAEKRDPKGLYK
KARKGEIKNFTGISDPYEAPKEPEVRINTDKLSVNECAKAILDYLVEKDI
VMNRDDVVKEASNGTVNGSANGVANGSA*
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spliced messenger RNA

>Gvermi5984.t1 ID=Gvermi5984.t1|Name=Gvermi5984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_1708:1711892..1712578+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACCGCTACCAACATCATGTGGCATGATGGTGCCATCACCAAGGA
GCACCGCTACGCCATGTTGAATCAACGCGGCGCCACAGTGTGGCTCACTG
GGCTGTCCGGGTCCGGAAAATCGACCGTGTCCGTCGCCCTGGAGCAGATG
ATGTTCAAGAAGGGGTACCTAGTGTACCGCCTGGACGGTGACAACATCCG
ATTCGGCCTTAACAGCAACCTTGGCTTCAGCGCCGAAGACCGCAAGGAGA
ACATCCGAAGAATCTCCGAGGTGGCCAAGCTCATGGCCGACGTGGGCGTG
ATCACCACGTCAGCGTTCATCTCGCCGTACATCGCAGACCGGCAGGTGGC
GCGTCAGATTCACGAGAAGGCCGGCATCCCGTTCGTCGAAGTCTACGTGG
ACGTGCCTCTGGAAGTGGCGGAGAAGCGCGATCCCAAAGGGCTGTACAAG
AAGGCGCGTAAGGGCGAGATCAAGAACTTTACGGGCATCAGTGACCCCTA
CGAGGCACCCAAGGAACCTGAGGTGCGAATCAACACGGACAAGCTGAGCG
TGAACGAGTGCGCCAAGGCCATCCTGGACTACTTGGTGGAGAAGGACATT
GTGATGAACCGCGATGACGTCGTGAAGGAGGCATCCAACGGCACCGTGAA
TGGCAGCGCCAACGGCGTGGCCAACGGTTCTGCGTGA
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protein sequence of Gvermi5984.t1

>Gvermi5984.t1 ID=Gvermi5984.t1|Name=Gvermi5984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=229bp
MPTATNIMWHDGAITKEHRYAMLNQRGATVWLTGLSGSGKSTVSVALEQM
MFKKGYLVYRLDGDNIRFGLNSNLGFSAEDRKENIRRISEVAKLMADVGV
ITTSAFISPYIADRQVARQIHEKAGIPFVEVYVDVPLEVAEKRDPKGLYK
KARKGEIKNFTGISDPYEAPKEPEVRINTDKLSVNECAKAILDYLVEKDI
VMNRDDVVKEASNGTVNGSANGVANGSA*
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mRNA from alignment at ScGOVlb_1708:1711892..1712578+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5984.t1 ID=Gvermi5984.t1|Name=Gvermi5984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_1708:1711892..1712578+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGACCGCTACCAACATCATGTGGCATGATGGTGCCATCACCAAGGA
GCACCGCTACGCCATGTTGAATCAACGCGGCGCCACAGTGTGGCTCACTG
GGCTGTCCGGGTCCGGAAAATCGACCGTGTCCGTCGCCCTGGAGCAGATG
ATGTTCAAGAAGGGGTACCTAGTGTACCGCCTGGACGGTGACAACATCCG
ATTCGGCCTTAACAGCAACCTTGGCTTCAGCGCCGAAGACCGCAAGGAGA
ACATCCGAAGAATCTCCGAGGTGGCCAAGCTCATGGCCGACGTGGGCGTG
ATCACCACGTCAGCGTTCATCTCGCCGTACATCGCAGACCGGCAGGTGGC
GCGTCAGATTCACGAGAAGGCCGGCATCCCGTTCGTCGAAGTCTACGTGG
ACGTGCCTCTGGAAGTGGCGGAGAAGCGCGATCCCAAAGGGCTGTACAAG
AAGGCGCGTAAGGGCGAGATCAAGAACTTTACGGGCATCAGTGACCCCTA
CGAGGCACCCAAGGAACCTGAGGTGCGAATCAACACGGACAAGCTGAGCG
TGAACGAGTGCGCCAAGGCCATCCTGGACTACTTGGTGGAGAAGGACATT
GTGATGAACCGCGATGACGTCGTGAAGGAGGCATCCAACGGCACCGTGAA
TGGCAGCGCCAACGGCGTGGCCAACGGTTCTGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:1711892..1712578+

>Gvermi5984.t1 ID=Gvermi5984.t1|Name=Gvermi5984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=687bp|location=Sequence derived from alignment at ScGOVlb_1708:1711892..1712578+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGACCGCTACCAACATCATGTGGCATGATGGTGCCATCACCAAGGA
GCACCGCTACGCCATGTTGAATCAACGCGGCGCCACAGTGTGGCTCACTG
GGCTGTCCGGGTCCGGAAAATCGACCGTGTCCGTCGCCCTGGAGCAGATG
ATGTTCAAGAAGGGGTACCTAGTGTACCGCCTGGACGGTGACAACATCCG
ATTCGGCCTTAACAGCAACCTTGGCTTCAGCGCCGAAGACCGCAAGGAGA
ACATCCGAAGAATCTCCGAGGTGGCCAAGCTCATGGCCGACGTGGGCGTG
ATCACCACGTCAGCGTTCATCTCGCCGTACATCGCAGACCGGCAGGTGGC
GCGTCAGATTCACGAGAAGGCCGGCATCCCGTTCGTCGAAGTCTACGTGG
ACGTGCCTCTGGAAGTGGCGGAGAAGCGCGATCCCAAAGGGCTGTACAAG
AAGGCGCGTAAGGGCGAGATCAAGAACTTTACGGGCATCAGTGACCCCTA
CGAGGCACCCAAGGAACCTGAGGTGCGAATCAACACGGACAAGCTGAGCG
TGAACGAGTGCGCCAAGGCCATCCTGGACTACTTGGTGGAGAAGGACATT
GTGATGAACCGCGATGACGTCGTGAAGGAGGCATCCAACGGCACCGTGAA
TGGCAGCGCCAACGGCGTGGCCAACGGTTCTGCGTGA
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