Gvermi5966.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5966.t1
Unique NameGvermi5966.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1537175..1537720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004364943.1
PFAMsEamA,NTP_transf_3
Max annot lvl2759|Eukaryota
Evalue4.78e-21
EggNOG OGs29D5M@1|root,2RK9E@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5966Gvermi5966Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1537175..1537720 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5966.t1.stop1Gvermi5966.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1537175..1537177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5966.t1.CDS1Gvermi5966.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1537175..1537720 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5966.t1.exon1Gvermi5966.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1537175..1537720 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5966.t1.start1Gvermi5966.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1537718..1537720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5966.t1Gvermi5966.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1537175..1537720 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5966.t1 ID=Gvermi5966.t1|Name=Gvermi5966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=182bp
MQVPNLLSMDVRSTCGDMIAALSSLGAIVYLNSCKELRQRVSLFVMMAPI
SALNSVTFSISSMLIAGTDFSVSDHGALGWMQSDRLLLGLYLGGVVGFLG
TVSCIAALKYLPNVVVGSVQTMMPVVGTIVAVLMGAERLPDLWTTLGGAV
LLYGVLVIADATRQSEVTVVLNEHVTADVRS*
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spliced messenger RNA

>Gvermi5966.t1 ID=Gvermi5966.t1|Name=Gvermi5966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=546bp|location=Sequence derived from alignment at ScGOVlb_1708:1537175..1537720- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGCCCAACCTGCTGTCGATGGACGTGCGGTCGACGTGCGGGGA
CATGATTGCGGCGCTGAGCTCGCTGGGGGCGATTGTGTACCTCAACTCGT
GCAAGGAGCTGCGGCAGCGCGTGTCGCTGTTTGTGATGATGGCGCCGATT
TCGGCGCTCAACTCGGTCACGTTCTCCATCTCGTCGATGCTGATTGCGGG
CACGGACTTTTCGGTGAGCGACCACGGGGCGCTGGGGTGGATGCAGTCGG
ACCGGCTGCTGCTGGGGCTGTACCTCGGCGGCGTCGTGGGCTTCCTGGGC
ACGGTGAGCTGCATCGCGGCGCTCAAGTACCTGCCCAACGTGGTGGTGGG
CAGCGTGCAGACGATGATGCCCGTCGTGGGCACGATTGTGGCCGTGCTGA
TGGGCGCCGAGCGGCTGCCGGACCTGTGGACGACGCTGGGCGGCGCGGTG
CTGCTGTACGGCGTGCTGGTCATCGCGGACGCCACGAGACAGAGTGAGGT
GACGGTGGTGCTCAACGAGCATGTGACTGCGGACGTGCGAAGCTGA
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protein sequence of Gvermi5966.t1

>Gvermi5966.t1 ID=Gvermi5966.t1|Name=Gvermi5966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=182bp
MQVPNLLSMDVRSTCGDMIAALSSLGAIVYLNSCKELRQRVSLFVMMAPI
SALNSVTFSISSMLIAGTDFSVSDHGALGWMQSDRLLLGLYLGGVVGFLG
TVSCIAALKYLPNVVVGSVQTMMPVVGTIVAVLMGAERLPDLWTTLGGAV
LLYGVLVIADATRQSEVTVVLNEHVTADVRS*
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mRNA from alignment at ScGOVlb_1708:1537175..1537720-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5966.t1 ID=Gvermi5966.t1|Name=Gvermi5966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=546bp|location=Sequence derived from alignment at ScGOVlb_1708:1537175..1537720- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGTGCCCAACCTGCTGTCGATGGACGTGCGGTCGACGTGCGGGGA
CATGATTGCGGCGCTGAGCTCGCTGGGGGCGATTGTGTACCTCAACTCGT
GCAAGGAGCTGCGGCAGCGCGTGTCGCTGTTTGTGATGATGGCGCCGATT
TCGGCGCTCAACTCGGTCACGTTCTCCATCTCGTCGATGCTGATTGCGGG
CACGGACTTTTCGGTGAGCGACCACGGGGCGCTGGGGTGGATGCAGTCGG
ACCGGCTGCTGCTGGGGCTGTACCTCGGCGGCGTCGTGGGCTTCCTGGGC
ACGGTGAGCTGCATCGCGGCGCTCAAGTACCTGCCCAACGTGGTGGTGGG
CAGCGTGCAGACGATGATGCCCGTCGTGGGCACGATTGTGGCCGTGCTGA
TGGGCGCCGAGCGGCTGCCGGACCTGTGGACGACGCTGGGCGGCGCGGTG
CTGCTGTACGGCGTGCTGGTCATCGCGGACGCCACGAGACAGAGTGAGGT
GACGGTGGTGCTCAACGAGCATGTGACTGCGGACGTGCGAAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:1537175..1537720-

>Gvermi5966.t1 ID=Gvermi5966.t1|Name=Gvermi5966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=546bp|location=Sequence derived from alignment at ScGOVlb_1708:1537175..1537720- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGTGCCCAACCTGCTGTCGATGGACGTGCGGTCGACGTGCGGGGA
CATGATTGCGGCGCTGAGCTCGCTGGGGGCGATTGTGTACCTCAACTCGT
GCAAGGAGCTGCGGCAGCGCGTGTCGCTGTTTGTGATGATGGCGCCGATT
TCGGCGCTCAACTCGGTCACGTTCTCCATCTCGTCGATGCTGATTGCGGG
CACGGACTTTTCGGTGAGCGACCACGGGGCGCTGGGGTGGATGCAGTCGG
ACCGGCTGCTGCTGGGGCTGTACCTCGGCGGCGTCGTGGGCTTCCTGGGC
ACGGTGAGCTGCATCGCGGCGCTCAAGTACCTGCCCAACGTGGTGGTGGG
CAGCGTGCAGACGATGATGCCCGTCGTGGGCACGATTGTGGCCGTGCTGA
TGGGCGCCGAGCGGCTGCCGGACCTGTGGACGACGCTGGGCGGCGCGGTG
CTGCTGTACGGCGTGCTGGTCATCGCGGACGCCACGAGACAGAGTGAGGT
GACGGTGGTGCTCAACGAGCATGTGACTGCGGACGTGCGAAGCTGA
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