Gvermi5913.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5913.t1
Unique NameGvermi5913.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:786272..787504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S50_50V6.1
PFAMsGlycolytic,Got1
Max annot lvl35493|Streptophyta
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167
GOsGO:0001666,GO:0003674,GO:0003824,GO:0004332,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036293,GO:0042866,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0070482,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue9.27e-146
EggNOG OGsCOG3588@1|root,KOG1557@2759|Eukaryota,37KBJ@33090|Viridiplantae,3GDDU@35493|Streptophyta
EC4.1.2.13
Descriptionfructose-bisphosphate aldolase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5913Gvermi5913Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 786272..787504 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5913.t1.stop1Gvermi5913.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 786272..786274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5913.t1.CDS1Gvermi5913.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 786272..787504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5913.t1.exon1Gvermi5913.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 786272..787504 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5913.t1.start1Gvermi5913.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 787502..787504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5913.t1Gvermi5913.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 786272..787504 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5913.t1 ID=Gvermi5913.t1|Name=Gvermi5913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=411bp
MSACFVAGAPLPRSSCRPALGAGCFAPPVVPRLPRQRRPCSPRMTFEAGV
FETQNPYAAELKETARYVASRGSGILASDESNSTTGKRLATIGLDNTEHN
RRRWRELLYTADIGDHIAGAIMFEETLYQSAADGTPFVDVLAAKGIVAGI
KVDTGLTALPRTRGETATTGLDGLAERCRRYYEQGARFAKWRAVMRIGRG
DGAPSDAAIVENAHALARYAHISQACGLVPIVEPEVLLDGDHGIDETAYF
TERVLSFTFRALNEFDVCLEGALLKPNMVNPGTDCAQQCDGETVARYTLR
TMMRGVPAAMGGIHFLSGGMSDQEATENLNLLNTIAGSERAPWSLNFSYG
RALQMAVLRTWGGDDANKQKAQELLAQLAKANGEAQLGKYSGPHPSPGGK
TRNFQPLRLV*
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spliced messenger RNA

>Gvermi5913.t1 ID=Gvermi5913.t1|Name=Gvermi5913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at ScGOVlb_1708:786272..787504- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTTGCTTTGTCGCCGGCGCGCCGCTGCCGCGCTCCTCCTGCCG
CCCCGCGCTCGGCGCTGGCTGCTTCGCGCCGCCCGTCGTGCCGCGCCTGC
CGCGCCAGCGCCGACCGTGCTCGCCGCGCATGACGTTCGAGGCCGGCGTG
TTCGAGACGCAAAACCCGTACGCGGCGGAGCTGAAGGAGACGGCGCGGTA
CGTGGCGTCGCGCGGCTCGGGCATCCTGGCCAGCGACGAGTCCAACTCCA
CGACGGGCAAGCGGCTGGCGACGATCGGGCTGGACAACACGGAGCACAAC
CGGCGGCGCTGGAGGGAGCTGCTGTACACGGCGGACATTGGCGACCACAT
CGCCGGCGCCATCATGTTCGAGGAGACGCTGTACCAGAGCGCGGCGGACG
GCACGCCGTTCGTGGACGTGCTGGCGGCCAAGGGCATCGTGGCCGGCATC
AAGGTGGACACCGGGCTGACGGCGCTGCCGCGCACGCGCGGCGAGACGGC
CACCACCGGGCTGGACGGGCTCGCGGAGCGCTGCCGCCGGTACTACGAGC
AGGGCGCGCGCTTCGCCAAGTGGCGCGCCGTGATGCGCATCGGGCGCGGC
GACGGCGCGCCGTCCGACGCGGCCATCGTGGAGAACGCGCACGCGCTGGC
GCGCTACGCGCACATCTCGCAGGCGTGCGGGCTGGTGCCCATCGTGGAGC
CCGAGGTGCTGCTGGACGGCGACCACGGCATCGACGAGACGGCGTACTTC
ACGGAGCGCGTGCTGAGCTTCACGTTCCGCGCGCTCAACGAGTTCGACGT
GTGCCTGGAGGGCGCGCTGCTCAAGCCCAACATGGTGAACCCCGGCACGG
ACTGCGCGCAGCAGTGCGACGGGGAGACGGTGGCGCGGTACACGCTGCGG
ACGATGATGCGGGGCGTGCCGGCGGCCATGGGCGGCATCCACTTCCTGTC
CGGCGGCATGAGCGACCAGGAGGCGACGGAGAATCTGAACCTGCTCAACA
CGATCGCGGGGTCGGAGAGGGCGCCGTGGAGCCTCAACTTCTCGTACGGG
CGGGCGCTGCAGATGGCGGTTCTGCGGACGTGGGGCGGGGACGACGCGAA
CAAGCAAAAGGCGCAAGAGCTGCTGGCGCAGCTGGCCAAGGCGAACGGCG
AGGCGCAGCTTGGAAAGTACAGTGGACCGCACCCGTCTCCCGGGGGCAAG
ACGAGAAACTTCCAACCGCTTCGCTTGGTTTGA
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protein sequence of Gvermi5913.t1

>Gvermi5913.t1 ID=Gvermi5913.t1|Name=Gvermi5913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=411bp
MSACFVAGAPLPRSSCRPALGAGCFAPPVVPRLPRQRRPCSPRMTFEAGV
FETQNPYAAELKETARYVASRGSGILASDESNSTTGKRLATIGLDNTEHN
RRRWRELLYTADIGDHIAGAIMFEETLYQSAADGTPFVDVLAAKGIVAGI
KVDTGLTALPRTRGETATTGLDGLAERCRRYYEQGARFAKWRAVMRIGRG
DGAPSDAAIVENAHALARYAHISQACGLVPIVEPEVLLDGDHGIDETAYF
TERVLSFTFRALNEFDVCLEGALLKPNMVNPGTDCAQQCDGETVARYTLR
TMMRGVPAAMGGIHFLSGGMSDQEATENLNLLNTIAGSERAPWSLNFSYG
RALQMAVLRTWGGDDANKQKAQELLAQLAKANGEAQLGKYSGPHPSPGGK
TRNFQPLRLV*
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mRNA from alignment at ScGOVlb_1708:786272..787504-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5913.t1 ID=Gvermi5913.t1|Name=Gvermi5913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at ScGOVlb_1708:786272..787504- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCTTGCTTTGTCGCCGGCGCGCCGCTGCCGCGCTCCTCCTGCCG
CCCCGCGCTCGGCGCTGGCTGCTTCGCGCCGCCCGTCGTGCCGCGCCTGC
CGCGCCAGCGCCGACCGTGCTCGCCGCGCATGACGTTCGAGGCCGGCGTG
TTCGAGACGCAAAACCCGTACGCGGCGGAGCTGAAGGAGACGGCGCGGTA
CGTGGCGTCGCGCGGCTCGGGCATCCTGGCCAGCGACGAGTCCAACTCCA
CGACGGGCAAGCGGCTGGCGACGATCGGGCTGGACAACACGGAGCACAAC
CGGCGGCGCTGGAGGGAGCTGCTGTACACGGCGGACATTGGCGACCACAT
CGCCGGCGCCATCATGTTCGAGGAGACGCTGTACCAGAGCGCGGCGGACG
GCACGCCGTTCGTGGACGTGCTGGCGGCCAAGGGCATCGTGGCCGGCATC
AAGGTGGACACCGGGCTGACGGCGCTGCCGCGCACGCGCGGCGAGACGGC
CACCACCGGGCTGGACGGGCTCGCGGAGCGCTGCCGCCGGTACTACGAGC
AGGGCGCGCGCTTCGCCAAGTGGCGCGCCGTGATGCGCATCGGGCGCGGC
GACGGCGCGCCGTCCGACGCGGCCATCGTGGAGAACGCGCACGCGCTGGC
GCGCTACGCGCACATCTCGCAGGCGTGCGGGCTGGTGCCCATCGTGGAGC
CCGAGGTGCTGCTGGACGGCGACCACGGCATCGACGAGACGGCGTACTTC
ACGGAGCGCGTGCTGAGCTTCACGTTCCGCGCGCTCAACGAGTTCGACGT
GTGCCTGGAGGGCGCGCTGCTCAAGCCCAACATGGTGAACCCCGGCACGG
ACTGCGCGCAGCAGTGCGACGGGGAGACGGTGGCGCGGTACACGCTGCGG
ACGATGATGCGGGGCGTGCCGGCGGCCATGGGCGGCATCCACTTCCTGTC
CGGCGGCATGAGCGACCAGGAGGCGACGGAGAATCTGAACCTGCTCAACA
CGATCGCGGGGTCGGAGAGGGCGCCGTGGAGCCTCAACTTCTCGTACGGG
CGGGCGCTGCAGATGGCGGTTCTGCGGACGTGGGGCGGGGACGACGCGAA
CAAGCAAAAGGCGCAAGAGCTGCTGGCGCAGCTGGCCAAGGCGAACGGCG
AGGCGCAGCTTGGAAAGTACAGTGGACCGCACCCGTCTCCCGGGGGCAAG
ACGAGAAACTTCCAACCGCTTCGCTTGGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:786272..787504-

>Gvermi5913.t1 ID=Gvermi5913.t1|Name=Gvermi5913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1233bp|location=Sequence derived from alignment at ScGOVlb_1708:786272..787504- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCTTGCTTTGTCGCCGGCGCGCCGCTGCCGCGCTCCTCCTGCCG
CCCCGCGCTCGGCGCTGGCTGCTTCGCGCCGCCCGTCGTGCCGCGCCTGC
CGCGCCAGCGCCGACCGTGCTCGCCGCGCATGACGTTCGAGGCCGGCGTG
TTCGAGACGCAAAACCCGTACGCGGCGGAGCTGAAGGAGACGGCGCGGTA
CGTGGCGTCGCGCGGCTCGGGCATCCTGGCCAGCGACGAGTCCAACTCCA
CGACGGGCAAGCGGCTGGCGACGATCGGGCTGGACAACACGGAGCACAAC
CGGCGGCGCTGGAGGGAGCTGCTGTACACGGCGGACATTGGCGACCACAT
CGCCGGCGCCATCATGTTCGAGGAGACGCTGTACCAGAGCGCGGCGGACG
GCACGCCGTTCGTGGACGTGCTGGCGGCCAAGGGCATCGTGGCCGGCATC
AAGGTGGACACCGGGCTGACGGCGCTGCCGCGCACGCGCGGCGAGACGGC
CACCACCGGGCTGGACGGGCTCGCGGAGCGCTGCCGCCGGTACTACGAGC
AGGGCGCGCGCTTCGCCAAGTGGCGCGCCGTGATGCGCATCGGGCGCGGC
GACGGCGCGCCGTCCGACGCGGCCATCGTGGAGAACGCGCACGCGCTGGC
GCGCTACGCGCACATCTCGCAGGCGTGCGGGCTGGTGCCCATCGTGGAGC
CCGAGGTGCTGCTGGACGGCGACCACGGCATCGACGAGACGGCGTACTTC
ACGGAGCGCGTGCTGAGCTTCACGTTCCGCGCGCTCAACGAGTTCGACGT
GTGCCTGGAGGGCGCGCTGCTCAAGCCCAACATGGTGAACCCCGGCACGG
ACTGCGCGCAGCAGTGCGACGGGGAGACGGTGGCGCGGTACACGCTGCGG
ACGATGATGCGGGGCGTGCCGGCGGCCATGGGCGGCATCCACTTCCTGTC
CGGCGGCATGAGCGACCAGGAGGCGACGGAGAATCTGAACCTGCTCAACA
CGATCGCGGGGTCGGAGAGGGCGCCGTGGAGCCTCAACTTCTCGTACGGG
CGGGCGCTGCAGATGGCGGTTCTGCGGACGTGGGGCGGGGACGACGCGAA
CAAGCAAAAGGCGCAAGAGCTGCTGGCGCAGCTGGCCAAGGCGAACGGCG
AGGCGCAGCTTGGAAAGTACAGTGGACCGCACCCGTCTCCCGGGGGCAAG
ACGAGAAACTTCCAACCGCTTCGCTTGGTTTGA
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