Gvermi5865.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5865.t1
Unique NameGvermi5865.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:430303..430935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703006.1
PFAMsPeptidase_C97
Max annot lvl2759|Eukaryota
Evalue1.36e-47
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
DescriptionLys63-specific deubiquitinase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5865Gvermi5865Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 430303..430935 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5865.t1.start1Gvermi5865.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 430303..430305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5865.t1.CDS1Gvermi5865.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 430303..430935 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5865.t1.exon1Gvermi5865.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 430303..430935 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5865.t1.stop1Gvermi5865.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 430933..430935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5865.t1Gvermi5865.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 430303..430935 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5865.t1 ID=Gvermi5865.t1|Name=Gvermi5865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=211bp
MLRSDNLSSLPLPPGPGVPVELNVYDLQHPESPDTVSTLNGYLYTFGVGL
YHSGVCVYGVEYAYGGHPGAHTGVFNTPPKKAPDARFRQTLLIGFTRLTT
DQVQELVDAMSSVWLGNTYNLLTRNCNHFASDLCERLTGKSAPEWVNRMA
WLGEKAKFLLPKGFDTPTAAPVTAERAREEQQLRQLMEGALTDDDDDYEH
QNRPDPDHDQ*
back to top

spliced messenger RNA

>Gvermi5865.t1 ID=Gvermi5865.t1|Name=Gvermi5865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_1708:430303..430935+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGCTCCGATAATCTTTCATCCCTGCCGCTGCCGCCGGGTCCCGG
CGTGCCAGTCGAGCTCAACGTCTATGACCTGCAACACCCGGAAAGCCCCG
ACACCGTCTCCACTCTCAATGGCTACCTATACACATTTGGCGTCGGTTTG
TACCATAGCGGCGTCTGCGTCTACGGCGTCGAGTATGCCTACGGTGGTCA
TCCAGGAGCTCACACTGGTGTCTTCAACACACCTCCTAAAAAGGCCCCTG
ACGCCCGCTTTCGACAAACGTTGCTTATCGGTTTTACGCGTCTGACCACC
GACCAGGTTCAAGAGCTTGTGGATGCCATGTCCTCTGTCTGGCTGGGCAA
CACCTACAACTTACTGACGCGCAATTGCAACCATTTTGCGAGCGACCTCT
GTGAGAGGCTTACTGGAAAGTCTGCTCCGGAGTGGGTTAACCGAATGGCC
TGGCTTGGCGAAAAGGCAAAGTTTTTGTTGCCCAAGGGATTCGACACACC
GACTGCCGCCCCAGTCACTGCGGAGAGGGCACGGGAGGAGCAGCAGCTCC
GGCAACTCATGGAGGGCGCCCTCACAgacgacgacgacgactacgaACAC
CAAAATCGACCAGACCCTGATCACGACCAGTAA
back to top

protein sequence of Gvermi5865.t1

>Gvermi5865.t1 ID=Gvermi5865.t1|Name=Gvermi5865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=211bp
MLRSDNLSSLPLPPGPGVPVELNVYDLQHPESPDTVSTLNGYLYTFGVGL
YHSGVCVYGVEYAYGGHPGAHTGVFNTPPKKAPDARFRQTLLIGFTRLTT
DQVQELVDAMSSVWLGNTYNLLTRNCNHFASDLCERLTGKSAPEWVNRMA
WLGEKAKFLLPKGFDTPTAAPVTAERAREEQQLRQLMEGALTDDDDDYEH
QNRPDPDHDQ*
back to top

mRNA from alignment at ScGOVlb_1708:430303..430935+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5865.t1 ID=Gvermi5865.t1|Name=Gvermi5865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_1708:430303..430935+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGCGCTCCGATAATCTTTCATCCCTGCCGCTGCCGCCGGGTCCCGG
CGTGCCAGTCGAGCTCAACGTCTATGACCTGCAACACCCGGAAAGCCCCG
ACACCGTCTCCACTCTCAATGGCTACCTATACACATTTGGCGTCGGTTTG
TACCATAGCGGCGTCTGCGTCTACGGCGTCGAGTATGCCTACGGTGGTCA
TCCAGGAGCTCACACTGGTGTCTTCAACACACCTCCTAAAAAGGCCCCTG
ACGCCCGCTTTCGACAAACGTTGCTTATCGGTTTTACGCGTCTGACCACC
GACCAGGTTCAAGAGCTTGTGGATGCCATGTCCTCTGTCTGGCTGGGCAA
CACCTACAACTTACTGACGCGCAATTGCAACCATTTTGCGAGCGACCTCT
GTGAGAGGCTTACTGGAAAGTCTGCTCCGGAGTGGGTTAACCGAATGGCC
TGGCTTGGCGAAAAGGCAAAGTTTTTGTTGCCCAAGGGATTCGACACACC
GACTGCCGCCCCAGTCACTGCGGAGAGGGCACGGGAGGAGCAGCAGCTCC
GGCAACTCATGGAGGGCGCCCTCACAgacgacgacgacgactacgaACAC
CAAAATCGACCAGACCCTGATCACGACCAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_1708:430303..430935+

>Gvermi5865.t1 ID=Gvermi5865.t1|Name=Gvermi5865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=633bp|location=Sequence derived from alignment at ScGOVlb_1708:430303..430935+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGCGCTCCGATAATCTTTCATCCCTGCCGCTGCCGCCGGGTCCCGG
CGTGCCAGTCGAGCTCAACGTCTATGACCTGCAACACCCGGAAAGCCCCG
ACACCGTCTCCACTCTCAATGGCTACCTATACACATTTGGCGTCGGTTTG
TACCATAGCGGCGTCTGCGTCTACGGCGTCGAGTATGCCTACGGTGGTCA
TCCAGGAGCTCACACTGGTGTCTTCAACACACCTCCTAAAAAGGCCCCTG
ACGCCCGCTTTCGACAAACGTTGCTTATCGGTTTTACGCGTCTGACCACC
GACCAGGTTCAAGAGCTTGTGGATGCCATGTCCTCTGTCTGGCTGGGCAA
CACCTACAACTTACTGACGCGCAATTGCAACCATTTTGCGAGCGACCTCT
GTGAGAGGCTTACTGGAAAGTCTGCTCCGGAGTGGGTTAACCGAATGGCC
TGGCTTGGCGAAAAGGCAAAGTTTTTGTTGCCCAAGGGATTCGACACACC
GACTGCCGCCCCAGTCACTGCGGAGAGGGCACGGGAGGAGCAGCAGCTCC
GGCAACTCATGGAGGGCGCCCTCACAgacgacgacgacgactacgaACAC
CAAAATCGACCAGACCCTGATCACGACCAGTAA
back to top