Gvermi5864.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5864.t1
Unique NameGvermi5864.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:428781..430049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LD67
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue3e-18
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5864Gvermi5864Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 428781..430049 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5864.t1.start1Gvermi5864.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 428781..428783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5864.t1.CDS1Gvermi5864.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 428781..430049 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5864.t1.exon1Gvermi5864.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 428781..430049 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5864.t1.stop1Gvermi5864.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 430047..430049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5864.t1Gvermi5864.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 428781..430049 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5864.t1 ID=Gvermi5864.t1|Name=Gvermi5864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MCNPRQRGSLNIRNHITQPMHSDAPIDYECHFPAGDKSTVPGSGMRSVKN
AAGHNWTPYEPLNPYYKWRSGVCGDNLYGTQDHLRGGKYYWDARRVQTYE
QGSVVFFESEIVTNHNGYFEFYICDIDKCGDDISTRCFREGHCTRLIRAR
GPCDSGDHHDCGPIDRNNPGRWYLPCMYKEPGMIGGSRSMAYLLPPWLVC
DHCVIQWYWTAANTCNPPGVAEYFTGPDAPRWRPCSGQGGAIGGWTKSKG
TCGGADFPEEYWQCSDVRITAKGAPAWGHHGGEAHHEGKAHHEGEAHHEG
EAHHEGHAHHGGNAHHGSKTHHGSEAHHGGEVHDAPHGGESHGDNPQGQL
FPASSSASTGSGVFVGARSKEQSGRNAPHEEAAPSEGEWNDDGGAASGWG
GGSSTDDGAHNADVDAASALGL*
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spliced messenger RNA

>Gvermi5864.t1 ID=Gvermi5864.t1|Name=Gvermi5864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1708:428781..430049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAACCCTCGACAAAGAGGCTCGCTTAACATCAGGAACCATATCAC
TCAACCGATGCATAGCGACGCTCCAATCGACTACGAGTGTCATTTCCCGG
CCGGCGACAAGTCAACAGTGCCAGGCTCTGGTATGCGGTCGGTGAAGAAT
GCCGCCGGTCACAACTGGACCCCATATGAACCTCTTAATCCGTATTATAA
ATGGCGATCTGGAGTGTGTGGAGACAATTTGTACGGCACCCAAGATCATC
TGCGGGGCGGCAAGTACTACTGGGACGCCAGGCGAGTGCAGACCTACGAA
CAGGGAAGTGTGGTTTTCTTCGAATCAGAAATTGTCACGAATCACAACGG
ATACTTTGAGTTCTACATCTGCGACATTGACAAATGCGGCGACGACATTT
CAACCAGATGCTTCCGAGAAGGACATTGCACGAGGCTGATACGCGCTAGA
GGTCCGTGCGACTCAGGCGACCATCATGACTGCGGACCAATCGACAGGAA
CAACCCTGGGCGCTGGTATCTGCCGTGCATGTACAAGGAGCCAGGGATGA
TAGGCGGGTCGAGGTCAATGGCGTACTTGCTACCGCCGTGGCTCGTGTGC
GACCACTGCGTGATTCAGTGGTACTGGACGGCGGCCAATACGTGCAATCC
GCCGGGCGTGGCTGAGTATTTCACCGGTCCGGACGCTCCGAGATGGCGGC
CTTGTTCTGGGCAAGGCGGTGCTATCGGGGGGTGGACGAAATCGAAGGGA
ACGTGCGGCGGCGCGGACTTTCCGGAAGAGTATTGGCAGTGCTCCGACGT
GCGGATAACTGCCAAGGGAGCACCGGCTTGGGGTCATCACGGAGGCGAAG
CGCATCACGAAGGAAAAGCGCATCACGAAGGAGAAGCGCATCACGAAGGT
GAAGCGCACCATGAAGGCCATGCGCATCATGGAGGCAACGCACATCATGG
AAGCAAAACGCATCATGGAAGCGAAGCGCATCATGGAGGCGAAGTGCATG
ACGCGCCTCATGGCGGCGAGTCGCATGGTGACAATCCCCAAGGCCAGTTG
TTCCCGGCATCATCGTCCGCAAGCACTGGCAGTGGAGTGTTTGTCGGGGC
TCGCAGCAAGGAGCAAAGCGGGCGGAACGCACCGCATGAGGAGGCCGCTC
CAAGCGAGGGCGAGTGGAACGACGATGGGGGCGCGGCGTCCGGCTGGGGA
GGCGGGTCGAGTACCGATGACGGTGCACACAATGCCGACGTGGACGCGGC
ATCGGCACTGGGCTTGTAA
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protein sequence of Gvermi5864.t1

>Gvermi5864.t1 ID=Gvermi5864.t1|Name=Gvermi5864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MCNPRQRGSLNIRNHITQPMHSDAPIDYECHFPAGDKSTVPGSGMRSVKN
AAGHNWTPYEPLNPYYKWRSGVCGDNLYGTQDHLRGGKYYWDARRVQTYE
QGSVVFFESEIVTNHNGYFEFYICDIDKCGDDISTRCFREGHCTRLIRAR
GPCDSGDHHDCGPIDRNNPGRWYLPCMYKEPGMIGGSRSMAYLLPPWLVC
DHCVIQWYWTAANTCNPPGVAEYFTGPDAPRWRPCSGQGGAIGGWTKSKG
TCGGADFPEEYWQCSDVRITAKGAPAWGHHGGEAHHEGKAHHEGEAHHEG
EAHHEGHAHHGGNAHHGSKTHHGSEAHHGGEVHDAPHGGESHGDNPQGQL
FPASSSASTGSGVFVGARSKEQSGRNAPHEEAAPSEGEWNDDGGAASGWG
GGSSTDDGAHNADVDAASALGL*
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mRNA from alignment at ScGOVlb_1708:428781..430049+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5864.t1 ID=Gvermi5864.t1|Name=Gvermi5864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1708:428781..430049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCAACCCTCGACAAAGAGGCTCGCTTAACATCAGGAACCATATCAC
TCAACCGATGCATAGCGACGCTCCAATCGACTACGAGTGTCATTTCCCGG
CCGGCGACAAGTCAACAGTGCCAGGCTCTGGTATGCGGTCGGTGAAGAAT
GCCGCCGGTCACAACTGGACCCCATATGAACCTCTTAATCCGTATTATAA
ATGGCGATCTGGAGTGTGTGGAGACAATTTGTACGGCACCCAAGATCATC
TGCGGGGCGGCAAGTACTACTGGGACGCCAGGCGAGTGCAGACCTACGAA
CAGGGAAGTGTGGTTTTCTTCGAATCAGAAATTGTCACGAATCACAACGG
ATACTTTGAGTTCTACATCTGCGACATTGACAAATGCGGCGACGACATTT
CAACCAGATGCTTCCGAGAAGGACATTGCACGAGGCTGATACGCGCTAGA
GGTCCGTGCGACTCAGGCGACCATCATGACTGCGGACCAATCGACAGGAA
CAACCCTGGGCGCTGGTATCTGCCGTGCATGTACAAGGAGCCAGGGATGA
TAGGCGGGTCGAGGTCAATGGCGTACTTGCTACCGCCGTGGCTCGTGTGC
GACCACTGCGTGATTCAGTGGTACTGGACGGCGGCCAATACGTGCAATCC
GCCGGGCGTGGCTGAGTATTTCACCGGTCCGGACGCTCCGAGATGGCGGC
CTTGTTCTGGGCAAGGCGGTGCTATCGGGGGGTGGACGAAATCGAAGGGA
ACGTGCGGCGGCGCGGACTTTCCGGAAGAGTATTGGCAGTGCTCCGACGT
GCGGATAACTGCCAAGGGAGCACCGGCTTGGGGTCATCACGGAGGCGAAG
CGCATCACGAAGGAAAAGCGCATCACGAAGGAGAAGCGCATCACGAAGGT
GAAGCGCACCATGAAGGCCATGCGCATCATGGAGGCAACGCACATCATGG
AAGCAAAACGCATCATGGAAGCGAAGCGCATCATGGAGGCGAAGTGCATG
ACGCGCCTCATGGCGGCGAGTCGCATGGTGACAATCCCCAAGGCCAGTTG
TTCCCGGCATCATCGTCCGCAAGCACTGGCAGTGGAGTGTTTGTCGGGGC
TCGCAGCAAGGAGCAAAGCGGGCGGAACGCACCGCATGAGGAGGCCGCTC
CAAGCGAGGGCGAGTGGAACGACGATGGGGGCGCGGCGTCCGGCTGGGGA
GGCGGGTCGAGTACCGATGACGGTGCACACAATGCCGACGTGGACGCGGC
ATCGGCACTGGGCTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:428781..430049+

>Gvermi5864.t1 ID=Gvermi5864.t1|Name=Gvermi5864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1708:428781..430049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCAACCCTCGACAAAGAGGCTCGCTTAACATCAGGAACCATATCAC
TCAACCGATGCATAGCGACGCTCCAATCGACTACGAGTGTCATTTCCCGG
CCGGCGACAAGTCAACAGTGCCAGGCTCTGGTATGCGGTCGGTGAAGAAT
GCCGCCGGTCACAACTGGACCCCATATGAACCTCTTAATCCGTATTATAA
ATGGCGATCTGGAGTGTGTGGAGACAATTTGTACGGCACCCAAGATCATC
TGCGGGGCGGCAAGTACTACTGGGACGCCAGGCGAGTGCAGACCTACGAA
CAGGGAAGTGTGGTTTTCTTCGAATCAGAAATTGTCACGAATCACAACGG
ATACTTTGAGTTCTACATCTGCGACATTGACAAATGCGGCGACGACATTT
CAACCAGATGCTTCCGAGAAGGACATTGCACGAGGCTGATACGCGCTAGA
GGTCCGTGCGACTCAGGCGACCATCATGACTGCGGACCAATCGACAGGAA
CAACCCTGGGCGCTGGTATCTGCCGTGCATGTACAAGGAGCCAGGGATGA
TAGGCGGGTCGAGGTCAATGGCGTACTTGCTACCGCCGTGGCTCGTGTGC
GACCACTGCGTGATTCAGTGGTACTGGACGGCGGCCAATACGTGCAATCC
GCCGGGCGTGGCTGAGTATTTCACCGGTCCGGACGCTCCGAGATGGCGGC
CTTGTTCTGGGCAAGGCGGTGCTATCGGGGGGTGGACGAAATCGAAGGGA
ACGTGCGGCGGCGCGGACTTTCCGGAAGAGTATTGGCAGTGCTCCGACGT
GCGGATAACTGCCAAGGGAGCACCGGCTTGGGGTCATCACGGAGGCGAAG
CGCATCACGAAGGAAAAGCGCATCACGAAGGAGAAGCGCATCACGAAGGT
GAAGCGCACCATGAAGGCCATGCGCATCATGGAGGCAACGCACATCATGG
AAGCAAAACGCATCATGGAAGCGAAGCGCATCATGGAGGCGAAGTGCATG
ACGCGCCTCATGGCGGCGAGTCGCATGGTGACAATCCCCAAGGCCAGTTG
TTCCCGGCATCATCGTCCGCAAGCACTGGCAGTGGAGTGTTTGTCGGGGC
TCGCAGCAAGGAGCAAAGCGGGCGGAACGCACCGCATGAGGAGGCCGCTC
CAAGCGAGGGCGAGTGGAACGACGATGGGGGCGCGGCGTCCGGCTGGGGA
GGCGGGTCGAGTACCGATGACGGTGCACACAATGCCGACGTGGACGCGGC
ATCGGCACTGGGCTTGTAA
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